mRNA_A-nodosum_M_contig1109.19.4 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1109.19.4
Unique NamemRNA_A-nodosum_M_contig1109.19.4
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1109.19.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1109contigA-nodosum_M_contig1109:252154..252697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size380
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866498.951198-UTR-A-nodosum_M_contig1109:252153..2521701680866498.951198-UTR-A-nodosum_M_contig1109:252153..252170Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1109 252154..252170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866498.9600031-CDS-A-nodosum_M_contig1109:252170..2523711680866498.9600031-CDS-A-nodosum_M_contig1109:252170..252371Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1109 252171..252371 +
1680866498.9717386-CDS-A-nodosum_M_contig1109:252535..2526971680866498.9717386-CDS-A-nodosum_M_contig1109:252535..252697Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1109 252536..252697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1109.19.4prot_A-nodosum_M_contig1109.19.4Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1109 252171..252697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1109.19.4

>prot_A-nodosum_M_contig1109.19.4 ID=prot_A-nodosum_M_contig1109.19.4|Name=mRNA_A-nodosum_M_contig1109.19.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=121bp
MESPRTRVVVRPCRRAVCHTIEKVVAMIPNRNDLSEERLRMTILQQLRSP
VSARTAKKVKTDAVFVQVFREFEEIFFQPSVEAHQGYHGNRIPATLTWRD
ITGNSESFQEAFRGKACTSL*
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mRNA from alignment at A-nodosum_M_contig1109:252154..252697+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1109.19.4 ID=mRNA_A-nodosum_M_contig1109.19.4|Name=mRNA_A-nodosum_M_contig1109.19.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=544bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:252154..252697+ (Ascophyllum nodosum dioecious)
ACGCTTTCATAAAATGTATGGAGTCGCCGAGAACGCGTGTTGTCGTACGA
CCGTGTCGAAGAGCGGTGTGCCATACCATAGAGAAGGTGGTCGCTATGAT
TCCGAACCGGAACGATCTCAGCGAGGAGCGGTTGAGGATGACGATTCTCC
AACAACTACGATCACCTGTCTCTGCACGAACGGCAAAGAAGGTTAAAACA
GACGCCGTTTTCGTGCAGGTTCGTTTCCACGGATCGACTTCACGTCCAAC
TTAACACATCGTAGGCATGCCTTTTCACCAACGCACCCCCACCCCCACGA
AAACACCTCATGGCTTCATCCTAAACCCCTGCTTCGATTTCCTCCGTGCC
GACCGCGTACTATCTACTATCGGATTTAAAAGGTCTTCCGTGAGTTCGAG
GAGATCTTCTTCCAGCCCTCGGTCGAAGCTCACCAGGGCTACCACGGCAA
CCGCATCCCGGCAACCCTGACATGGCGCGATATCACGGGGAACAGCGAAA
GCTTCCAGGAGGCGTTCCGCGGAAAGGCATGTACTTCTTTATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1109:252154..252697+

>mRNA_A-nodosum_M_contig1109.19.4 ID=mRNA_A-nodosum_M_contig1109.19.4|Name=mRNA_A-nodosum_M_contig1109.19.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=363bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:252154..252697+ (Ascophyllum nodosum dioecious)
ATGGAGTCGCCGAGAACGCGTGTTGTCGTACGACCGTGTCGAAGAGCGGT
GTGCCATACCATAGAGAAGGTGGTCGCTATGATTCCGAACCGGAACGATC
TCAGCGAGGAGCGGTTGAGGATGACGATTCTCCAACAACTACGATCACCT
GTCTCTGCACGAACGGCAAAGAAGGTTAAAACAGACGCCGTTTTCGTGCA
GGTCTTCCGTGAGTTCGAGGAGATCTTCTTCCAGCCCTCGGTCGAAGCTC
ACCAGGGCTACCACGGCAACCGCATCCCGGCAACCCTGACATGGCGCGAT
ATCACGGGGAACAGCGAAAGCTTCCAGGAGGCGTTCCGCGGAAAGGCATG
TACTTCTTTATAG
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