mRNA_A-nodosum_M_contig11055.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11055.4.1
Unique NamemRNA_A-nodosum_M_contig11055.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11055.4.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 120 bits (301), Expect = 4.120e-30
Identity = 61/73 (83.56%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 VALAAPNLIFDEVTASDGFSEAYKYTGERRHLQTCTRSDDALDPTPPNRRDNVAFASRRDAARRERDGTGTVC 219
            V LAAP L FDEVTAS  F E +K+TGE RHLQTCT SDDALDPT PNRRDNVAFASRRDAARRERDGTGTVC
Sbjct:   92 VVLAAPCLAFDEVTASGVFPEEHKHTGEGRHLQTCTNSDDALDPTAPNRRDNVAFASRRDAARRERDGTGTVC 164
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BLAST of mRNA_A-nodosum_M_contig11055.4.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 61.6 bits (148), Expect = 2.240e-9
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   97 QTCTRSDDALDPTPPNRRDNVAFASRRDAARRERDGTGTVC 219
            QTC+ SDDA DPTPPN RD+ AFASR  AA+RE +GTGTVC
Sbjct:    1 QTCSTSDDADDPTPPNERDDEAFASRVAAAKRELEGTGTVC 41
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11055.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
O82433_FUCDI4.120e-3083.56Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO2.240e-973.17Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11055contigA-nodosum_M_contig11055:10249..11197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size221
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866496.0607538-CDS-A-nodosum_M_contig11055:10250..103311680866496.0607538-CDS-A-nodosum_M_contig11055:10250..10331Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11055 10251..10331 -
1680866496.0810366-CDS-A-nodosum_M_contig11055:11059..111971680866496.0810366-CDS-A-nodosum_M_contig11055:11059..11197Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11055 11060..11197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11055.4.1prot_A-nodosum_M_contig11055.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11055 10251..11197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11055.4.1

>prot_A-nodosum_M_contig11055.4.1 ID=prot_A-nodosum_M_contig11055.4.1|Name=mRNA_A-nodosum_M_contig11055.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
VALAAPNLIFDEVTASDGFSEAYKYTGERRHLQTCTRSDDALDPTPPNRR
DNVAFASRRDAARRERDGTGTVC
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mRNA from alignment at A-nodosum_M_contig11055:10249..11197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11055.4.1 ID=mRNA_A-nodosum_M_contig11055.4.1|Name=mRNA_A-nodosum_M_contig11055.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=949bp|location=Sequence derived from alignment at A-nodosum_M_contig11055:10249..11197- (Ascophyllum nodosum dioecious)
GTGGCACTGGCCGCACCCAATCTGATATTCGACGAGGTCACAGCCAGTGA
TGGTTTTTCTGAGGCATACAAATACACCGGGGAGCGGAGACACCTCCAGA
CCTGCACAAGATCTGACGATGCGCTGGATCCAACGCCGGTGAGGACAAAA
TCTTTCGTTTCACCCTATGTCTTGCCCTTTTCCCCCCTTTGGCTTGCTCC
TTTGGTCCAATAATATATAATATCAGAAAACACTAGAATGGGCGATAAAT
ATTATTATTCGAATTTCCCGGTTTTGTGGTGGCCTGGGATAGTTATCCTA
TGAATAGTAGCACGGGCAGGAGAGGGGCTCAATGCAGACTGCCTGATGAT
CAGTTTCGCTATGGCAGGTCGGCTTTCAGTTATCCGCCAGAAGCAAGAGA
CGTACAATTTGTGGAAGCCCATCATCCTGCTCTACAGCTAGTTGTGAATT
GTCGTTTGAGAATAATGGGATTAGGGTTGCTGTATTACCCACGCAATACA
CGTAGTATTTCAACAGTACTGGTATCAATCAATGATTACCACTGCTCTTT
TGTGCCATTCTCCACACGAGACAACAACGTGTAGACAGAGCTATGCTCTA
TTAGAAGTCATGAGATGCTCGACTATTTATTGCAAGATACATCTTACGGG
TGAAGACAGAAATCTACCTCCTCAGTCTCTGACGCCACCCACCATATTTG
CTCGAACGCCGCCAATACGCCTGCTATTTAATGTCGTTCACCTTACTTAG
CGTCTTTTTTATTGTTGTTACCTTATACTTGTTTCGGTGGCATACCAGCC
CCCCCCAATGCCCTAATGTCCCAATTCTCACGCCTATGTTCGAATACTCG
TTTTTTTTCTGCGCAGCCGAATAGAAGGGACAACGTAGCTTTTGCGTCGC
GACGCGATGCCGCCAGGCGAGAGCGTGACGGGACAGGGACTGTCTGCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11055:10249..11197-

>mRNA_A-nodosum_M_contig11055.4.1 ID=mRNA_A-nodosum_M_contig11055.4.1|Name=mRNA_A-nodosum_M_contig11055.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig11055:10249..11197- (Ascophyllum nodosum dioecious)
GTGGCACTGGCCGCACCCAATCTGATATTCGACGAGGTCACAGCCAGTGA
TGGTTTTTCTGAGGCATACAAATACACCGGGGAGCGGAGACACCTCCAGA
CCTGCACAAGATCTGACGATGCGCTGGATCCAACGCCGCCGAATAGAAGG
GACAACGTAGCTTTTGCGTCGCGACGCGATGCCGCCAGGCGAGAGCGTGA
CGGGACAGGGACTGTCTGC
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