mRNA_A-nodosum_M_contig1103.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1103.5.1
Unique NamemRNA_A-nodosum_M_contig1103.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1103.5.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.840e-47
Identity = 89/170 (52.35%), Postives = 115/170 (67.65%), Query Frame = 1 
Query:   10 GEKFRDSQALKVKVERVFLAQGRRCHLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQ--ARVCAYKGRSTNEWNVIEAVLNHVQCTGQSGDKRKRPCRRSVEEEAVKLINANHKTTSPALVKTLKATAGVEISERTANRVRSDVLGKGQDATAAHYQLLDSYLSSIGRGN 513
            G+ F  S+  K  +ER  ++  R+C LDKRVSGG+GKL RC+GA+I    K  +GC   AR C     +   W V E VL+HV CTGQ+G+K++R  RR VEEEA  L+++N   T PAL KTLKAT+GV+ISERTA R+R+D+LGKG+D  A  YQLL SY   +GR N
Sbjct:   30 GQIFSSSREFKRAIERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGT---WKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDN 194
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BLAST of mRNA_A-nodosum_M_contig1103.5.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.530e-47
Identity = 91/167 (54.49%), Postives = 119/167 (71.26%), Query Frame = 1 
Query:   19 FRDSQALKVKVERVFLAQGRRCHLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQ--ARVCAYKGRSTNEWNVIEAVLNHVQCTGQSGDKRKRPCRRSVEEEAVKLINANHKTTSPALVKTLKATAGVEISERTANRVRSDVLGKGQDATAAHYQLLDSYLSSIGRGN 513
            F  S+A K   ER  +AQ R+C LDKR+ GG+GKL RC+GAI V+G K  +GC   AR C    ++   W V E VL+HV CTGQ+ +K++R  RR VE EA  L++ANH+ T P+LVKTLKAT+GV++SERTA+R+R+D+LGKG+DA A  YQLL SY   +GR N
Sbjct:  141 FATSRAFKHAFERCMIAQSRQCRLDKRIIGGRGKLHRCTGAI-VNG-KATSGCPVLARGCK---QTDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDN 302
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BLAST of mRNA_A-nodosum_M_contig1103.5.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 4.550e-46
Identity = 83/151 (54.97%), Postives = 109/151 (72.19%), Query Frame = 1 
Query:   61 FLAQGRRCHLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQARVCAYKGRSTNEWNVIEAVLNHVQCTGQSGDKRKRPCRRSVEEEAVKLINANHKTTSPALVKTLKATAGVEISERTANRVRSDVLGKGQDATAAHYQLLDSYLSSIGRGN 513
             ++Q R+C LDKRVSGG+GKL RC+GAII    K  +GC  R    K ++   W V E VL+HV CTGQ+G+K++R  RR VE EA  L++ANH  T P+LVKTLKAT+GV++SER+A+R+R+D+LGKG+DA A  YQLL S    +GR N
Sbjct:    1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCK-QTDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDN 148
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BLAST of mRNA_A-nodosum_M_contig1103.5.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 7.890e-44
Identity = 89/170 (52.35%), Postives = 115/170 (67.65%), Query Frame = 1 
Query:   10 GEKFRDSQALKVKVERVFLAQGRRCHLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQ--ARVCAYKGRSTNEWNVIEAVLNHVQCTGQSGDKRKRPCRRSVEEEAVKLINANHKTTSPALVKTLKATAGVEISERTANRVRSDVLGKGQDATAAHYQLLDSYLSSIGRGN 513
            G+ F  S+  K  +ER  ++  R+C LDKRVSGG+GKL RC+GA+I    K  +GC   AR C     +   W V E VL+HV CTGQ+G+K++R  RR VEEEA  L+++N   T PAL KTLKAT+GV+ISERTA R+R+D+LGKG+D  A  YQLL SY   +GR N
Sbjct:   30 GQIFSSSREFKRAIERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGT---WKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDN 194
[Close]
BLAST of mRNA_A-nodosum_M_contig1103.5.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 5.010e-43
Identity = 82/151 (54.30%), Postives = 106/151 (70.20%), Query Frame = 1 
Query:   61 FLAQGRRCHLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQARVCAYKGRSTNEWNVIEAVLNHVQCTGQSGDKRKRPCRRSVEEEAVKLINANHKTTSPALVKTLKATAGVEISERTANRVRSDVLGKGQDATAAHYQLLDSYLSSIGRGN 513
             ++Q R+C LDKR SGG+ KL RC+GAII    K  +GC  R    K ++   W V EAVL+HV CTGQ+G+K++   RR VE++A  L++ANH  T P+LVKTLKAT+GV+ISERTA R+R D+LGKG DA A  YQLL +Y   +GR N
Sbjct:    1 MISQSRQCRLDKRDSGGRSKLHRCTGAIING--KATSGCPVRARGCK-QTDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDN 148
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BLAST of mRNA_A-nodosum_M_contig1103.5.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.730e-32
Identity = 69/128 (53.91%), Postives = 94/128 (73.44%), Query Frame = 1 
Query:  130 CSGAIIVDGVKGATGCQARVCAYKGRSTNEWNVIEAVLNHVQCTGQSGDKRKRPCRRSVEEEAVKLINANHKTTSPALVKTLKATAGVEISERTANRVRSDVLGKGQDATAAHYQLLDSYLSSIGRGN 513
            C+GAI V+G K  +GC  R    K ++   W V++ VL+HV  TGQ+G+K++R  RR VE EA  L++ANH+ T P+LVKTLKAT+GV++SERTA+R+R+D+LGKG+DA A  YQLL SY   +GR N
Sbjct:   21 CTGAI-VNG-KATSGCPVRARGCK-QTDGTWKVMDVVLDHVARTGQAGNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDN 145
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1103.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JX21_9PHAE1.840e-4752.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5Y0_9PHAE3.530e-4754.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZQ7_ECTSI4.550e-4654.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I0_9PHAE7.890e-4452.35SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KQC0_9PHAE5.010e-4354.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L768_9PHAE2.730e-3253.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1103contigA-nodosum_M_contig1103:238170..238682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T015303
Model size513
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.52e-06
EggNOG OGs2EVC3@1|root,2SXCD@2759|Eukaryota,1MJUK@121069|Pythiales
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866494.9600966-CDS-A-nodosum_M_contig1103:238169..2386821680866494.9600966-CDS-A-nodosum_M_contig1103:238169..238682Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1103 238170..238682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1103.5.1prot_A-nodosum_M_contig1103.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1103 238170..238682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1103.5.1

>prot_A-nodosum_M_contig1103.5.1 ID=prot_A-nodosum_M_contig1103.5.1|Name=mRNA_A-nodosum_M_contig1103.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=171bp
IEVGEKFRDSQALKVKVERVFLAQGRRCHLDKRVSGGQGKLIRCSGAIIV
DGVKGATGCQARVCAYKGRSTNEWNVIEAVLNHVQCTGQSGDKRKRPCRR
SVEEEAVKLINANHKTTSPALVKTLKATAGVEISERTANRVRSDVLGKGQ
DATAAHYQLLDSYLSSIGRGN
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mRNA from alignment at A-nodosum_M_contig1103:238170..238682-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1103.5.1 ID=mRNA_A-nodosum_M_contig1103.5.1|Name=mRNA_A-nodosum_M_contig1103.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at A-nodosum_M_contig1103:238170..238682- (Ascophyllum nodosum dioecious)
ATAGAGGTCGGAGAGAAGTTCCGTGACTCCCAAGCCTTGAAAGTGAAAGT
TGAGCGGGTCTTTCTGGCACAAGGTAGGCGGTGCCACCTTGATAAGAGAG
TATCTGGCGGCCAGGGCAAGCTCATCCGCTGCAGCGGGGCGATCATCGTC
GACGGCGTGAAGGGGGCAACGGGCTGCCAGGCGCGCGTTTGTGCGTACAA
GGGAAGGTCTACGAATGAATGGAATGTAATCGAGGCCGTCCTTAATCACG
TGCAGTGCACGGGGCAGTCCGGTGACAAGAGGAAACGGCCCTGCCGAAGG
TCGGTGGAGGAAGAAGCCGTGAAGCTCATTAATGCGAACCACAAGACTAC
ATCGCCAGCACTCGTAAAGACGTTGAAAGCGACCGCCGGGGTCGAGATCT
CCGAGCGCACGGCCAACCGCGTGCGATCCGACGTGCTCGGCAAAGGTCAA
GATGCGACCGCTGCACATTACCAACTTCTCGACAGCTACCTGAGTAGTAT
CGGGAGGGGCAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1103:238170..238682-

>mRNA_A-nodosum_M_contig1103.5.1 ID=mRNA_A-nodosum_M_contig1103.5.1|Name=mRNA_A-nodosum_M_contig1103.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=513bp|location=Sequence derived from alignment at A-nodosum_M_contig1103:238170..238682- (Ascophyllum nodosum dioecious)
ATAGAGGTCGGAGAGAAGTTCCGTGACTCCCAAGCCTTGAAAGTGAAAGT
TGAGCGGGTCTTTCTGGCACAAGGTAGGCGGTGCCACCTTGATAAGAGAG
TATCTGGCGGCCAGGGCAAGCTCATCCGCTGCAGCGGGGCGATCATCGTC
GACGGCGTGAAGGGGGCAACGGGCTGCCAGGCGCGCGTTTGTGCGTACAA
GGGAAGGTCTACGAATGAATGGAATGTAATCGAGGCCGTCCTTAATCACG
TGCAGTGCACGGGGCAGTCCGGTGACAAGAGGAAACGGCCCTGCCGAAGG
TCGGTGGAGGAAGAAGCCGTGAAGCTCATTAATGCGAACCACAAGACTAC
ATCGCCAGCACTCGTAAAGACGTTGAAAGCGACCGCCGGGGTCGAGATCT
CCGAGCGCACGGCCAACCGCGTGCGATCCGACGTGCTCGGCAAAGGTCAA
GATGCGACCGCTGCACATTACCAACTTCTCGACAGCTACCTGAGTAGTAT
CGGGAGGGGCAAC
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