mRNA_A-nodosum_M_contig11021.1.4 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11021.1.4
Unique NamemRNA_A-nodosum_M_contig11021.1.4
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11021.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11021contigA-nodosum_M_contig11021:3312..6080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size385
Hectar predicted targeting categoryother localisation
Exons4
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866494.6082263-CDS-A-nodosum_M_contig11021:3311..33591680866494.6082263-CDS-A-nodosum_M_contig11021:3311..3359Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11021 3312..3359 -
1680866494.6167338-CDS-A-nodosum_M_contig11021:4346..44751680866494.6167338-CDS-A-nodosum_M_contig11021:4346..4475Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11021 4347..4475 -
1680866494.6248863-CDS-A-nodosum_M_contig11021:4793..49221680866494.6248863-CDS-A-nodosum_M_contig11021:4793..4922Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11021 4794..4922 -
1680866494.6352696-CDS-A-nodosum_M_contig11021:6002..60801680866494.6352696-CDS-A-nodosum_M_contig11021:6002..6080Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11021 6003..6080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11021.1.4prot_A-nodosum_M_contig11021.1.4Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11021 3312..6080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11021.1.4

>prot_A-nodosum_M_contig11021.1.4 ID=prot_A-nodosum_M_contig11021.1.4|Name=mRNA_A-nodosum_M_contig11021.1.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=128bp
MAAQFGNKASFEAVLDAVRTTLTPDQVKTMQMSYDDDRDSVLGCAAINKS
PDVFEAVMSGIENDVTPQEFETLLTQRNFKGMCLLAMAAQFGNKASFEAV
LDAVRTRLTPDQVKTMQMSFDDDKNSVL
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mRNA from alignment at A-nodosum_M_contig11021:3312..6080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11021.1.4 ID=mRNA_A-nodosum_M_contig11021.1.4|Name=mRNA_A-nodosum_M_contig11021.1.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2769bp|location=Sequence derived from alignment at A-nodosum_M_contig11021:3312..6080- (Ascophyllum nodosum dioecious)
ATGGCTGCTCAATTCGGGAACAAGGCTTCTTTCGAGGCTGTTCTTGATGC
CGTTAGAACGACGTTAACGCCCGATCAGGTGCGTCGTTTGGAAGTATGGT
TGGAAATACCCAACCAACTGTACTCGTCCGCTAGCAAATTCTGATCGTTG
TGTTCCTGACGTTAGGCTACGCACTCAATTTGTAAGACAACATATTTTAC
CTCGCAGAAAACGTCCCTTTAGGTCATGATGAAACCCCGTTTTTACTTAA
CAATAGCTGGAAATTTGCCCATGGTCATCGCGGGGAGTTGTTCGTGAGGC
ACTGTACAGTCCATCATTGTTTTTCACACAGTTTCGCGTTCGAAACGTCT
GGCGCCTACTTAATTTCTTGGAGCATGGGAAAATCTCGAAGAAACTTGGC
ACGGCTGATTCCACCGGATTCCTCGGTATAATCATATTTCGTGTGGCTAG
ACTCGGTTTCTTAGCTTTTTTACATAAGAGATCAGAAGGTAAAATTCTGG
AGGGGGGGGCGGGGGAGTCTAGTGTAAGGTCTTTGAAAAAAAAACAAGAC
CACTGTCAGTGTAAAAAAAAAACTTGCCGCTGATTTATTTTTCTCTAAAT
GCTTTTTTGATCCTGATAAAGACATTTGGCGTGATTTCATAGCTTTTGTT
GGGCTGCAGGCCGAAACCTTTTATTCTGGGGGGGAGATTCCCGTAGAATA
TCGAAGTCCCCAGCCCTCAGGCGCTAAAAATGTATGATGTAGCCTGCAGC
GCAACAACAGCTAGCGAATCGCGCCTAGTGAGGGCACGGAGTTCTACAAA
CGTTTTCACGAGGACCCGCCTACTGGAACTCGGGTGGTGATCGAGATTTT
GTCTCAAATGCGGACCGTAGTACGTACAAACAACGGTCCCACCTAATCCC
CTGGGTTTCAGCTGGAAAATCATAATTCTACACGACGATTGTGAATAACA
GGCAGCATAGCTGAATTTCTACTTTGAAACTATTTCTCAACCTACAGCGT
GCCAGACGCGTTATCCAGTCTTTTAGTCGAGCTAGCCTACATAGTCAAAC
GTAGCACGATAACAGTCTTTGATGCTTAGTTATAATAGCGGGCCGCGTGT
GTTCTAGGAGACTGACCGTCGCTGCTCCACTTGTTTGCATGATATATCGC
CACGGCAGGTCAAGACCATGCAGATGTCTTACGATGACGATAGAGACTCT
GTCCTCGGCTGTGCGGCGATAAACAAGAGCCCGGATGTGTTCGAAGCGGT
AATGTCCGGTATCGAGAACGATGTCACACCTCAAGAGGTACGGAACAACG
ACGATTCGGATTTGATCCATCACATGTTCGAGGGTTGGATGCACCCTTGA
CCAGCTCTCGATGCCGAAGTTAACGTGGCCTTATTGAAAAACGATTGATG
CAAACCCCAACTTATTTTGCTATAATACTTCGTAGCAGGCATGAAATCAT
GGTGGAAAGCTTGTACTCACAGTAATTTCATCCACCACACTCCACGCCCC
GCTAAGCCGATATCACGGCGATTTGATTTGAAGGCGTCTGTGACATGGTA
TCCTCGTGGCCGTCCCCTCCCGTAACATTGGTCGACTCGACACGTGGGAA
CGCAGTTCGAGACATTGCTGACTCAACGGAATTTTAAGGGCATGTGCTTA
CTGGCTATGGCGGCTCAATTCGGGAACAAGGCTTCTTTCGAGGCTGTTCT
TGATGCCGTTAGAACGAGGTTAACGCCTGATCAGGTGCGCCGGTTGGAAG
TATGGTTGGAAATACCCAACCAATTGTACTCGCCCGCTAGCAAATTCTGG
TTGTTGTGTTCCTGACGTTGGGCTACGCACTCAATTTGTAAGACAACATA
TTTTACCTCCTCGCAGAAAACGTCCCTTTTGGCCATAATAACATTCCGTT
TTTACTCAACAATAGCTGGAAAATTGCCCTTGGTCATCGCGAGGAGTGGC
ACGGCTGATTCCACCGGATTCCTCGATACTGTATAATCATATTTCGTGTG
GCTAGACTCGGTTTCTTAGCTTTTCTAGATAGAGGTCAGAAGGTAAAATT
CTGGGGGGGAGTCTAGTGTAGTAAGGTCTTCGCGAAAAAAACACCACTGC
CAGTGTAAAAATAAACTGACGCTGATTTCTTTTTCAAAATGTTTCTTTGA
ACTTGATAAAGACATTTGGCGTGACTTCGTTACTTTTGTTGAGCTACAGG
CCGGCACGTTTGTCTCTGGGGGGGGGAGATTTCTGGATTTAAGAAAAGCG
ATTCCCGTAGACGATCGGATTCCCCAGCCCACAAGCGCTAAAAATGTATG
TTGTAGCCTGCAGCGCAACATAAGCTAGCAAATCGCGCCTAGTGAGGGCA
CGGAACTCTACAAACGTTTTCGCGAGGACTCGCCTGCTGGAACTCGGGTG
GCGATCGAGATTTTGTTTCGAACGCGGACCGTAGTACGTACAAAGAACGT
TTCCCCCTCATCCCCTGGGTTTCAGCTGGAAAGTCATGATTCCACACGAC
GATTGTGAATATCAGGCAGCATAGCTAAATTTCTCCTTTGAAGCTACTTC
CTTACCTACAGCGTGCCAGACGCATTATCCTGTCTTTTAGTCGAGTTAGA
CTGTATAGCAAACGAAACACGACAACAGTCTTTGTATCTAGTTAGAACAG
TGGGCCGCGTATGGTCTAGGAGGCTGACTGTCGCTGCTCTACTTGTTTAT
ATAATATTATCGCCACGGCAGGTTAAGACCATGCAAATGTCTTTCGATGA
TGATAAAAACTCTGTCCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11021:3312..6080-

>mRNA_A-nodosum_M_contig11021.1.4 ID=mRNA_A-nodosum_M_contig11021.1.4|Name=mRNA_A-nodosum_M_contig11021.1.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at A-nodosum_M_contig11021:3312..6080- (Ascophyllum nodosum dioecious)
ATGGCTGCTCAATTCGGGAACAAGGCTTCTTTCGAGGCTGTTCTTGATGC
CGTTAGAACGACGTTAACGCCCGATCAGGTCAAGACCATGCAGATGTCTT
ACGATGACGATAGAGACTCTGTCCTCGGCTGTGCGGCGATAAACAAGAGC
CCGGATGTGTTCGAAGCGGTAATGTCCGGTATCGAGAACGATGTCACACC
TCAAGAGTTCGAGACATTGCTGACTCAACGGAATTTTAAGGGCATGTGCT
TACTGGCTATGGCGGCTCAATTCGGGAACAAGGCTTCTTTCGAGGCTGTT
CTTGATGCCGTTAGAACGAGGTTAACGCCTGATCAGGTTAAGACCATGCA
AATGTCTTTCGATGATGATAAAAACTCTGTCCTC
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