mRNA_A-nodosum_M_contig11016.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11016.1.1
Unique NamemRNA_A-nodosum_M_contig11016.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11016.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11016contigA-nodosum_M_contig11016:1002..7203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1784
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_000420.1
Cds size1230
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11016.1.1prot_A-nodosum_M_contig11016.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11016 1552..6916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866494.4795744-UTR-A-nodosum_M_contig11016:1001..11391680866494.4795744-UTR-A-nodosum_M_contig11016:1001..1139Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11016 1002..1139 +
1680866494.4883628-UTR-A-nodosum_M_contig11016:1422..15511680866494.4883628-UTR-A-nodosum_M_contig11016:1422..1551Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11016 1423..1551 +
1680866494.567539-UTR-A-nodosum_M_contig11016:6916..72031680866494.567539-UTR-A-nodosum_M_contig11016:6916..7203Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11016 6917..7203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866494.4984043-CDS-A-nodosum_M_contig11016:1551..16131680866494.4984043-CDS-A-nodosum_M_contig11016:1551..1613Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11016 1552..1613 +
1680866494.509867-CDS-A-nodosum_M_contig11016:2588..27171680866494.509867-CDS-A-nodosum_M_contig11016:2588..2717Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11016 2589..2717 +
1680866494.5192785-CDS-A-nodosum_M_contig11016:3124..36411680866494.5192785-CDS-A-nodosum_M_contig11016:3124..3641Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11016 3125..3641 +
1680866494.527426-CDS-A-nodosum_M_contig11016:3994..41261680866494.527426-CDS-A-nodosum_M_contig11016:3994..4126Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11016 3995..4126 +
1680866494.5387478-CDS-A-nodosum_M_contig11016:5583..57181680866494.5387478-CDS-A-nodosum_M_contig11016:5583..5718Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11016 5584..5718 +
1680866494.551365-CDS-A-nodosum_M_contig11016:6200..63541680866494.551365-CDS-A-nodosum_M_contig11016:6200..6354Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11016 6201..6354 +
1680866494.558846-CDS-A-nodosum_M_contig11016:6815..69161680866494.558846-CDS-A-nodosum_M_contig11016:6815..6916Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11016 6816..6916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11016.1.1

>prot_A-nodosum_M_contig11016.1.1 ID=prot_A-nodosum_M_contig11016.1.1|Name=mRNA_A-nodosum_M_contig11016.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=410bp
MLSAVERWVTKTLEEKDEAVRAVKNSLCLPEVGPQFKERLDRQISRGIDA
GLNDLCNAPDVKAGATLMGNIIQATRSEIHENIFEIGERYSALFVKGGSK
DGEASAVANNDKQRFPTKSFFHPPRFVQPSPRSPILSFASPFVKPSSSED
SRNPRPLDSRDSRELWSPFNPKTIFYIGGPASNPRVQPRSVHPSSSHACA
GVTARRFEAPALTSTPARGATRSPEEKCTGSSNVCKESLRKAELARAEAE
WLERQVDVVHEAAVSIKDDLEKQSQRQQEKLKKLEDDMQKASGEVEEVTR
GLIDKHVASSLTKEDAILSFLSTLNGENEEGHQKVRARAQAIALHQAATS
SHRQQSAALQLTTQAIKISGIMSHHLFGDFLDTLSAFQLRANERRMSCQS
DLKVRKRNT*
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mRNA from alignment at A-nodosum_M_contig11016:1002..7203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11016.1.1 ID=mRNA_A-nodosum_M_contig11016.1.1|Name=mRNA_A-nodosum_M_contig11016.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6202bp|location=Sequence derived from alignment at A-nodosum_M_contig11016:1002..7203+ (Ascophyllum nodosum dioecious)
AGCCTATCCACTCCCCGTGACAAAGATCCTGGGAGAGGGAGAgGGAGAGA
GGCCTCGGAGACCAAAGAGCGCGCGCTTATCACCGTGCGGCCGGGCTTGC
CTTCGGAGGCGCCCTTTGATGGCTCGCAACACAACCAGGTGCTCGCCTTT
CTTCCGGTGCGGCAGTTTCCGGCCGCTTTTTATCTCGTACGAAGTATGGC
ATGGTAGTATAGTATTGATTATATTATAGAGATACAGTTTTATTATTAGT
GTATGGCAGATGCACTTATTGACACAGCGCTTGCTAGCGATACTCTCAAG
AAGACATATTGAAGGTGTGAGTGTGCTGTTCCTCGGGATGCGTACGTCGT
TTGGCGTGGCTCATGCGTTGCGGAAAGAGTGATTCCCCTCCGTTGTGTGG
TTTTGTTTGGTCATTGGTCAGGGCCCCGATCAGAGTTCACCTCCGACGGC
GGCGGCGGCGGCGGCCCCCGAGGCAGACAAGACCAGGGAGAGAGAGAGAA
CTTTGGTGACCTTGCCCAAGACTCTCCGGATTGGCGACGTCAAGCAAACA
ATGCTCTCTGCTGTTGAAAGATGGGTCACCAAGACTCTTGAAGAAAAAGA
CGAGGCCGTGAGGTGGGGTGTAACAAGCCCAAGATTGCAGCACTGCACGA
CTTGAGATTGGTGTTGCGCCGTGATATGCCGCCTCGATCACGAGAAGAAC
TTTGATCGATCGCACTCTGCTACTCCACGTCATTACACTCCAACACTCCA
ACATTGCCTATTCCGTTTTCAAGCTGATGCAACTAGTCATCTTTTGGGTC
TTGAATACTTGGTATATTTTGATATTTATTAGTTATAGAACCTATTCATG
GTCATCTTGTAACGGTAAAACATCCCACCATACTTACCGTACCTTGTGTG
GTTGGGTTGATCTCATGACTATAATGTGCTGAACGTGAAGGCAAGAGACA
CTGAATATTCATGTTGTTGTCTTCACAATAAAAGCTGTTTGATCTCTACT
CAGTACTTTCTAACATCCGTACTGGTCCAACTGACGCGAACGCCTTCCGT
GGTCAAGCAGGCTAACTACCCAGAAAGGGTGCACATTGTGAAAAAATCAA
AAGGAACAAAAGAACCCAGAAAAGTCAACACACACGCGATAATTGGAAAA
AAAAAGGAAAAAGAAAACAGAAGAATAAGGCTCCAGACAGTCAGACGTCG
CAGGCGACATGTCAGACAAAGGAGATAGATAGAACCCATGGCTCCCACTC
GACACGCGAGGCCAAGCAAAATAAACCAAACAAGAAGAATCAAGGATCAC
CAATCAAGACAATAAAATCGCATGATTCTATCCTTGTACCTCTACTAGGC
CGGGGTGTATTCACCGCCGGGTTTGCACCGGCCAGGCCATTCCCTACACC
TACCTACAAATGTGTGGGGGGCTCACGATCACGAAAGTCTCGTTTGGTCG
CACGTCGTCGGCTGGCCTCCTCTTCTTCCTTGTGTACCTACAGTATTAAT
CTTAATATTAATATTAATAGTAATAACCGGTGACTCGGTTCGACCGCTGA
CATTGACACTGTGCTCTTGTGTACCCTCTTGGTCCAGGGCCGTGAAAAAC
AGCCTCTGTCTACCTGAAGTCGGGCCTCAGTTCAAGGAACGGTTGGACCG
CCAAATCTCACGGGGCATCGACGCTGGCTTGAACGACCTCTGCAACGCAC
CAGACGTGAAGGCCGGGTGAGAGCCTCCTCGTTTCTATCGAGCATTAATA
TCGATCTGCCGGGTTGGACTCATGTGCTTCAAATCGCATTAACATCACTC
GAGTTTCACCCGTGCGCTTCCTTCCTCACCTACCACCCACCACCTACCAC
CTACGCCATGCTATAGCTATAAGCTATCACTTGACTGACATCCGAACCGT
GCAATGCAAATAACTCTATTTTACATTTTTTATCTGGGTAACAACTCCGA
GTCGAGTCGAGATGTGTTTGTGTGTGTTTCGGGGTTGATTTTTCGTGTCG
TTGGCTATGTGAAAATCCGTGTATGACCCCCGATGTGTTCCTTGGGCTTC
GAGCCGGGAAATCAATCGACGCAGCTGACGTACGATAACGCTATCCCCTC
GACGCCCCTTGCATACCTTGCAGAGCCACTCTGATGGGGAACATCATCCA
GGCGACGCGCTCCGAGATTCACGAAAACATATTCGAAATCGGCGAGAGGT
ACTCGGCGCTGTTCGTAAAAGGCGGGTCGAAGGATGGCGAAGCATCGGCG
GTAGCAAACAACGACAAGCAACGATTCCCGACCAAGTCCTTCTTTCATCC
ACCCCGATTCGTGCAACCGTCTCCCCGCAGCCCAATCCTCAGCTTTGCCT
CGCCGTTCGTGAAGCCTTCTTCGTCAGAAGACAGCCGAAATCCTAGGCCG
CTCGACTCTCGTGACTCTCGTGAGTTGTGGAGCCCCTTCAACCCGAAGAC
GATTTTTTATATCGGCGGGCCGGCCTCGAATCCCCGCGTACAACCGCGCT
CCGTGCATCCCTCGTCCTCACATGCTTGCGCTGGGGTGACCGCGAGGCGG
TTTGAGGCGCCGGCCTTGACGAGTACCCCGGCACGAGGTGCTACAAGATC
TCCCGAGGAGAAGTGTACTGGATCTAGCAACGTCTGCAAGGTGAGTTTCT
AGCCGGTAACGGCATTGCTGTGTATACCGTTGATGGCGAATAATACTATA
ATAGTATCGCAACAAGTACATTTTGGTTGCGAAATATGTTACTATTAATA
TTAATACTACTAAGTACTCGAAGGGCATATTACACCCCACGGCTACGGCT
ACCATTGGATCATTTATTGGATCATTTTTGCAAGCATCCCTCTCACGCTT
GACATACATGTCGGGTGATAGAACTCGTGCTACAAGGTTACGCCTTTGAT
TGGTCGAAGCCGCTCCTGATTATCTCCGAAAAACGCGGGCTGATGATGTT
TGTCTTGGATCTTCTATCTTTCGGCGGCGCCACTCCCCCGCAGGAGTCCT
TACGTAAGGCCGAGTTGGCTCGGGCGGAGGCGGAGTGGCTCGAGCGCCAG
GTAGACGTCGTGCACGAGGCAGCGGTCAGTATCAAAGACGACCTGGAGAA
GCAATCACAGCGGCAGCAAGAGAAGGCAAGGGCAGATTAGATCACCTCCT
GATACATACATCTCTCCGACGGGCGGGATAGAGCTAAACCCTATACACGA
TACACGATACACTATACACTACGCCATAGCGTGTCAAGTGTATATGTTAT
CAAGTAGTATGGAGTATGAAGTACCCCTGGTGGAAGTTTTTCGGCGAAGA
TTTTCAACGACAAAAGCTTATCTCCTTCATGTACGGGGCTAAGGCCCTGT
CTTAACGTCGAGATAGAATCTGTTCATAGAATCTGTTTGGCGACAGCTTC
CGTTGACAGATTCTATTTTGGGTCCAAACGACCATTTTAGGAAATGCGGT
GTCATTAGACAGTCACGCCGGAGCAAGTCATTCCAACACCTACACACTGG
TGAGGGCGGCATAGGGCAGACAGCGTAACGAGGTTCGATCTCGCTCGAAC
CTCGACCTTGCGCTCCCTAGAGTACTCGGCAAGCCGTCAGTCAAGCCTCC
CCATAAAACGTGACTGTCAACAGACTTCAAGAAACTACTTACTGTACCAA
AGCAGGGCATACAAGGAGGACCAGATTTTTTTTTGAGTTTCACAAGCTCC
TCAAACGATATATGAAAGCCCAACAGCTCGTGCAGTGCATGGTACCTCGT
GCATTGTTTGGGGGCGTCCGGAATACATCAAAGTCGGTGTACTCGTCGGA
CTCGCAACTGCTGTTGTCCACACCCAGCGTTAGCGGCGCGGTCTAGAAAA
ACAAGTACTCGGGTATCAGTTCTACTGTTTCCAGTACGTAGCAGCTGTTT
TTATATCGGTATCAGCCGTACTATTTCCAGTATGTAGCAGCTGATGACTT
TTAttTTTTTGGTCACAGTTGTACTGTTTTTAGTATGTAGCAGGTGTTTA
TTTTTTTTCTTGCCATCGAATCATTTCGTACGACAGAATCTACGTAGAAC
AGAAAGAAAGTATAGGTGGACAGATTCTATTAAATGCCAAAACAATTAGT
TAGAATCTGTCCATCCGACAGATTCTGTCGTGTTCAGAACTTGCTAACTA
GTAGTGTCGAGCTTATTTGGCCAATCACAGAGCTTTATTGTCGACAGATT
TTCTGAACAGATTCTATCAAGACGTTAAGACAGGGCCTAATCAGAGTTGT
CTAGAGTTTGTTAAAAAAATATAGGAAATTAGTGGGGGGGGTGAGGGAGA
AAATGTCCTCTACTAGGGCGGCAAGAGTAGATACATACTAGATTGCCCGC
ATTTATGCGGTAAGCGTTGATCCATTATGAATCCCCTCGCCCTTTCAACT
GCGCTTAGGGGCAGGCGCCCGCGCCCCATTCACCACAAATTTTGATTGCG
AGCCGGCTTCTCCCAGAGCTTGAAGCTTAGAGCTATTTTTACACCCTTAC
TGCAACGCATCGATCCATCCATCGATCCATCCCTCTCATCGATCGATCGA
TCCCTCTCATATGATCCCTCTCTCCTTCGCAGCTGAAGAAGCTTGAAGAC
GACATGCAGAAGGCGTCAGGAGAGGTGGAGGAGGTCACTCGGGGCCTCAT
AGACAAGCACGTCGCGTCCAGCCTCACCAAGGAAGACGCCATCCTCTCGT
TCCTCTCCACTCTGAACGTGATCACTTTGACCACTCTGAACGGTAGATTT
GGCATCTTTTCGTTGCTATTATTTCTAGCTAAGGGGCGTTTCAAAGCGGA
AACCTCGTGGAGGCGGTAAGAGTAACTTGGTTTTGGCGCAAGTGCCCGAG
CAAAGCAAAGAAACGAAAAAGAACGAAAATATAAGCATTTGGAGAACACG
TCTATCGACGCTTGACGAGACCTGGATGCTTGACGCCCCGCCGCTGTTGC
ATCCCTCTATCTGATACATTTTTCTTTACTTGACAAACCTCATTCTCTCG
AAGTATACTTTTATTATCATCTATAACGTATTTTTATACCTTTTTAATTA
TATCGTATACCCCGTTCGTTTTACATCATACCTTATTCATATACCTTATG
CCATAACCATTGCACCTTATACCCTTTCCGTTTTACCTCATACAGTACCA
TATTCGTTGCACGTTTTACCTCAATCGCAATGCCTTATATACCTTACAGG
GTGAAAATGAAGAGGGCCATCAGAAGGTGAGGGCGCGCGCGCAGGCGATC
GCTCTGCACCAAGCCGCGACTTCCTCCCACCGACAGCAGAGCGCGGCGCT
GCAGCTCACGACACAGGCGATCAAGATAAGCGGGATCATGTCCCACCACT
TGTGTGAGTTGTTGCCACTATGATAGCATTTCTTCGAAAGAGAGATAAAG
TTCGTGTTCCTTGTAGCAGCGGCGGCGGCGGCTTCCCTTTGTCTTTTTCC
GTGACGCATATCGAGGCTGCGTGCTGTCGGGTCTAGATGATGTCGATGCG
GCGTACTGCGGTTCGTTGCAACGAAGGTTCGCTTAGCTCTTAGCTCTCAG
TGTGGCGGGCACTGGGGTTAGCTGATACGTTCCCGTCCTCCCAAAAACTA
TGACTTGGAAAATGTGTACCTGGTACAGAATTGTTTGAGACTCAGATAAC
GGTATCCAGTACGCAAACAGTTGGGATTATTATTAGTAGCATCCGCCTGG
TAACGGACCCTGTCCCTGTCTTTTTTTCTCTTCTTCTTTTTCATTTTGGC
GGTGCACCACACGGCACACGAAAACTGCAACGATAAAATTTCTTCTCGTA
CGATCGGCGCAAAGTCGGCGATTTCTTGGACACCCTCTCTGCCTTCCAAC
TGAGGGCCAATGAGCGGAGGATGTCCTGCCAGAGCGATCTCAAGGTTCGA
AAGAGAAACACTTGACTGCTCGCCTTTTTGATGACGTACAACTGTTTCTG
CAGCTGTAGCTGTAGCTCGGACCGCCCTTGCTGCTATGTAAAGTGTGTAA
CGGCGAGTGTTTTCACTACTGCAGGGGGGGGGGTGTCCCCTCTTTTTTAC
GCCTTTGGTCATTATTGTTTTCCCAACGATTAGCTTTTATATTTATTTTT
AGTTGGTTGGCACATCCCTCATTTTTGCACAGGTTGTTTTGATAATAGTC
AAAGATTTCATGGTTTGTACTAGGTTTTGTAGCAGTGTTTGTTAATAGTC
AC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11016:1002..7203+

>mRNA_A-nodosum_M_contig11016.1.1 ID=mRNA_A-nodosum_M_contig11016.1.1|Name=mRNA_A-nodosum_M_contig11016.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at A-nodosum_M_contig11016:1002..7203+ (Ascophyllum nodosum dioecious)
ATGCTCTCTGCTGTTGAAAGATGGGTCACCAAGACTCTTGAAGAAAAAGA
CGAGGCCGTGAGGGCCGTGAAAAACAGCCTCTGTCTACCTGAAGTCGGGC
CTCAGTTCAAGGAACGGTTGGACCGCCAAATCTCACGGGGCATCGACGCT
GGCTTGAACGACCTCTGCAACGCACCAGACGTGAAGGCCGGAGCCACTCT
GATGGGGAACATCATCCAGGCGACGCGCTCCGAGATTCACGAAAACATAT
TCGAAATCGGCGAGAGGTACTCGGCGCTGTTCGTAAAAGGCGGGTCGAAG
GATGGCGAAGCATCGGCGGTAGCAAACAACGACAAGCAACGATTCCCGAC
CAAGTCCTTCTTTCATCCACCCCGATTCGTGCAACCGTCTCCCCGCAGCC
CAATCCTCAGCTTTGCCTCGCCGTTCGTGAAGCCTTCTTCGTCAGAAGAC
AGCCGAAATCCTAGGCCGCTCGACTCTCGTGACTCTCGTGAGTTGTGGAG
CCCCTTCAACCCGAAGACGATTTTTTATATCGGCGGGCCGGCCTCGAATC
CCCGCGTACAACCGCGCTCCGTGCATCCCTCGTCCTCACATGCTTGCGCT
GGGGTGACCGCGAGGCGGTTTGAGGCGCCGGCCTTGACGAGTACCCCGGC
ACGAGGTGCTACAAGATCTCCCGAGGAGAAGTGTACTGGATCTAGCAACG
TCTGCAAGGAGTCCTTACGTAAGGCCGAGTTGGCTCGGGCGGAGGCGGAG
TGGCTCGAGCGCCAGGTAGACGTCGTGCACGAGGCAGCGGTCAGTATCAA
AGACGACCTGGAGAAGCAATCACAGCGGCAGCAAGAGAAGCTGAAGAAGC
TTGAAGACGACATGCAGAAGGCGTCAGGAGAGGTGGAGGAGGTCACTCGG
GGCCTCATAGACAAGCACGTCGCGTCCAGCCTCACCAAGGAAGACGCCAT
CCTCTCGTTCCTCTCCACTCTGAACGGTGAAAATGAAGAGGGCCATCAGA
AGGTGAGGGCGCGCGCGCAGGCGATCGCTCTGCACCAAGCCGCGACTTCC
TCCCACCGACAGCAGAGCGCGGCGCTGCAGCTCACGACACAGGCGATCAA
GATAAGCGGGATCATGTCCCACCACTTGTTCGGCGATTTCTTGGACACCC
TCTCTGCCTTCCAACTGAGGGCCAATGAGCGGAGGATGTCCTGCCAGAGC
GATCTCAAGGTTCGAAAGAGAAACACTTGA
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