mRNA_A-nodosum_M_contig1101.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1101.10.1
Unique NamemRNA_A-nodosum_M_contig1101.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1101.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1101contigA-nodosum_M_contig1101:131200..131850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1408423.JHYA01000006_gene469
PFAMsPhage_int_SAM_1,Phage_integrase
Model size606
Max annot lvl909932|Negativicutes
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.7e-06
EggNOG OGsCOG4974@1|root,COG4974@2|Bacteria,1TQ3R@1239|Firmicutes,4H1Z3@909932|Negativicutes
DescriptionBelongs to the 'phage' integrase family
Cds size606
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866494.3482912-CDS-A-nodosum_M_contig1101:131199..1315701680866494.3482912-CDS-A-nodosum_M_contig1101:131199..131570Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1101 131200..131570 +
1680866494.3582442-CDS-A-nodosum_M_contig1101:131615..1318501680866494.3582442-CDS-A-nodosum_M_contig1101:131615..131850Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1101 131616..131850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1101.10.1prot_A-nodosum_M_contig1101.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1101 131200..131850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1101.10.1

>prot_A-nodosum_M_contig1101.10.1 ID=prot_A-nodosum_M_contig1101.10.1|Name=mRNA_A-nodosum_M_contig1101.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=202bp
GVTPKQATPILRPDFQHLMRYMHTGLLCAAQPVDRLANARDMALFAVAFR
AGSRGSDLAKLLAAQVLHLPSSQGVVLNFHFTKTLRDGAAHASLLAPDND
MPETCAVAAMLRYAQAADSCGWDITPKRLARPLSAKTMAARFKEHLGHAG
LGSRQFTFHSFRVGCAVTQTIAGKDIAEIMAAVNWKSEKIARRYVGGARA
TR
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mRNA from alignment at A-nodosum_M_contig1101:131200..131850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1101.10.1 ID=mRNA_A-nodosum_M_contig1101.10.1|Name=mRNA_A-nodosum_M_contig1101.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at A-nodosum_M_contig1101:131200..131850+ (Ascophyllum nodosum dioecious)
GGAGTTACACCCAAGCAGGCGACCCCTATCCTGCGCCCGGACTTCCAGCA
TCTAATGCGGTACATGCACACGGGTCTGCTCTGCGCGGCACAACCAGTCG
ACCGTCTAGCCAACGCCCGCGACATGGCCTTGTTCGCGGTAGCATTTCGC
GCCGGCAGCCGCGGCAGCGACCTCGCCAAGCTGTTAGCCGCCCAGGTCCT
GCATCTGCCCTCCAGCCAAGGGGTAGTATTAAACTTTCACTTTACGAAAA
CACTACGAGATGGGGCCGCGCATGCTTCCCTCCTGGCGCCTGATAATGAC
ATGCCGGAGACGTGCGCGGTAGCCGCGATGCTTCGTTACGCGCAGGCCGC
TGACTCATGCGGATGGGATATGTCCAAGGGTTACCTGTTCCCCGAACTAC
CAGCCTCAGGAGAAAGCACACCTAAACGGCTTGCTAGACCCTTGTCCGCA
AAAACCATGGCAGCGCGTTTTAAGGAACACCTGGGACACGCAGGCTTGGG
ATCGCGGCAATTTACGTTCCATTCGTTTAGGGTGGGGTGTGCCGTCACTC
AGACTATCGCAGGAAAGGATATTGCGGAAATTATGGCGGCTGTTAACTGG
AAGTCGGAAAAGATTGCACGCCGGTACGTGGGAGGCGCGAGGGCTACGAG
G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1101:131200..131850+

>mRNA_A-nodosum_M_contig1101.10.1 ID=mRNA_A-nodosum_M_contig1101.10.1|Name=mRNA_A-nodosum_M_contig1101.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at A-nodosum_M_contig1101:131200..131850+ (Ascophyllum nodosum dioecious)
GGAGTTACACCCAAGCAGGCGACCCCTATCCTGCGCCCGGACTTCCAGCA
TCTAATGCGGTACATGCACACGGGTCTGCTCTGCGCGGCACAACCAGTCG
ACCGTCTAGCCAACGCCCGCGACATGGCCTTGTTCGCGGTAGCATTTCGC
GCCGGCAGCCGCGGCAGCGACCTCGCCAAGCTGTTAGCCGCCCAGGTCCT
GCATCTGCCCTCCAGCCAAGGGGTAGTATTAAACTTTCACTTTACGAAAA
CACTACGAGATGGGGCCGCGCATGCTTCCCTCCTGGCGCCTGATAATGAC
ATGCCGGAGACGTGCGCGGTAGCCGCGATGCTTCGTTACGCGCAGGCCGC
TGACTCATGCGGATGGGATATCACACCTAAACGGCTTGCTAGACCCTTGT
CCGCAAAAACCATGGCAGCGCGTTTTAAGGAACACCTGGGACACGCAGGC
TTGGGATCGCGGCAATTTACGTTCCATTCGTTTAGGGTGGGGTGTGCCGT
CACTCAGACTATCGCAGGAAAGGATATTGCGGAAATTATGGCGGCTGTTA
ACTGGAAGTCGGAAAAGATTGCACGCCGGTACGTGGGAGGCGCGAGGGCT
ACGAGG
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