mRNA_A-nodosum_M_contig11.99.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.99.1
Unique NamemRNA_A-nodosum_M_contig11.99.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: D7G4W1_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W1_ECTSI)

HSP 1 Score: 402 bits (1034), Expect = 8.780e-131
Identity = 189/248 (76.21%), Postives = 217/248 (87.50%), Query Frame = 3
Query:  453 QVQHVQIDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQDARNRTPIPVHVSRKTDRSVRRMFPYLIGREDDNGADGRVVAALKFDVFQDFKPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQLLVCDALMTTKKHQTHFSVEDGVALAGELKAQRTFLVGLGGSIEYHETNAMLESKEREE-GAPYVRLAYDGLAVDIDL 1193
            QV+HVQID GKTWREG IRW+PR       HG+  LDGIVLTHDHADA+LGLDDVRS+QD+R RTP PVHVS +TDRSVRR+FPYL+GREDDNGA GR VAAL F+VFQDF+PFEVGGL++TPFPV+HGEDY+SHGFLFGPEG++ICYISDVSRVPPES++FL + GP+QLLVCDALM +KKH+THF VED V LAG+LKA+RT LVGLG  IEYH TNAML S+E EE G P+VRLAYDGLAVD+DL
Sbjct:  254 QVKHVQIDTGKTWREGAIRWFPR-------HGVRGLDGIVLTHDHADAMLGLDDVRSIQDSRKRTPTPVHVSERTDRSVRRVFPYLVGREDDNGAGGRFVAALNFNVFQDFQPFEVGGLEITPFPVMHGEDYVSHGFLFGPEGNKICYISDVSRVPPESMEFLEKHGPMQLLVCDALMVSKKHRTHFCVEDSVVLAGQLKARRTLLVGLGSDIEYHATNAMLASREEEELGMPHVRLAYDGLAVDVDL 494          
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: A0A6H5JEM8_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM8_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.030e-99
Identity = 144/187 (77.01%), Postives = 167/187 (89.30%), Query Frame = 3
Query:  453 QVQHVQIDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQDARNRTPIPVHVSRKTDRSVRRMFPYLIGREDDNGADGRVVAALKFDVFQDFKPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQLLVCDALMTTKKHQTHF 1013
            QV+HVQID GKTWREG IRW+PR       HG+  LDGIVLTHDHADA+LGLDDVRS+QD+R RTP PVHVS +TDRSVRR+FPYL+GREDDNGA GR VAAL F+VFQDF+PFEVGGL++TPFPV+HGEDY+SHGFLFGPEG++ICYISDVSRVPPES++FL + GP+QLLVCDALM +KKH+THF
Sbjct:  193 QVKHVQIDTGKTWREGAIRWFPR-------HGVRGLDGIVLTHDHADAMLGLDDVRSIQDSRKRTPTPVHVSERTDRSVRRVFPYLVGREDDNGAGGRFVAALNFNVFQDFQPFEVGGLEITPFPVMHGEDYVSHGFLFGPEGNKICYISDVSRVPPESMEFLEKHGPMQLLVCDALMVSKKHRTHF 372          
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: A0A835ZCK6_9STRA (Beta-lactamase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK6_9STRA)

HSP 1 Score: 200 bits (508), Expect = 6.630e-55
Identity = 109/196 (55.61%), Postives = 136/196 (69.39%), Query Frame = 3
Query:  471 IDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQDARNRTPIPVHVSRKTDRSVRRMFPYLIGREDDNGADG-RVVAALKFDVFQDFKPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQLLVCDALMTTKKHQTHFSVEDGVALAGELKA 1055
            ID GKT+REGV+RWYPR DV       TSLDGIVL+HDHADAILGLDDVR LQ++ +  P PV V  +T  S++R+FPYL G    NG  G R VAAL F  F   +PF V GL + P PV+HGEDY+S+GF+FGP  +R  YISD SRVPP+++  LR +  + LLV DAL+  + H THFS+   V LA +L+A
Sbjct:   23 IDTGKTFREGVLRWYPRHDV-------TSLDGIVLSHDHADAILGLDDVRGLQNSAD-PPTPVLVDSRTMHSLQRVFPYLCGT---NGKAGIRHVAALDFRTFTPHEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRER-IALLVVDALLKDRAHPTHFSMAQSVELARDLRA 206          
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: A0A1J7G538_LUPAN (Lactamase_B domain-containing protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7G538_LUPAN)

HSP 1 Score: 188 bits (478), Expect = 7.320e-51
Identity = 104/251 (41.43%), Postives = 152/251 (60.56%), Query Frame = 3
Query:  462 HVQIDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQDARNRTPI---PVHVSRKTDRSVRRMFPYLIGREDDNGADGRVVAALKFDVFQDF--KPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQL--LVCDALMTTKKHQTHFSVEDGVALAGELKAQRTFLVGLGGSIEYHETNAMLESKEREEGAPYVRLAYDGLAVDIDL 1193
            ++ ID GK+++E V+RW+       VPH I  +D I+LTH+HADA+LGLDDVRS+Q       I   P+++S+ +  S+++ FPYL+ ++   G + R VA + +++  D   +PF   GLK TP PV+HGEDYI  GFLFG E SR+ YISDVSR+P  +   + + G  QL  L+ D+L  T  H  H  +   +     L  +RT L+G+    ++H  N +L    R EG P V+LA+DGL V I+L
Sbjct:   85 YILIDAGKSFKEAVLRWF-------VPHQIPRIDSIILTHEHADAVLGLDDVRSVQHFSPTNDINSTPIYLSQHSMNSIKQKFPYLVEKKRKEGQEIRWVAQMAWNIIADNFNQPFFASGLKFTPLPVMHGEDYICLGFLFG-EKSRVAYISDVSRIPVSTEYVISKSGAGQLDLLILDSLCRTGSHNFHLCLPQALETVKRLCPKRTLLIGMTHEFDHHRDNELLTEWSRREGIP-VQLAHDGLRVPINL 326          
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: G7IP30_MEDTR (Metallo-hydrolase/oxidoreductase superfamily protein n=4 Tax=Trifolieae TaxID=163742 RepID=G7IP30_MEDTR)

HSP 1 Score: 187 bits (475), Expect = 1.670e-50
Identity = 104/258 (40.31%), Postives = 153/258 (59.30%), Query Frame = 3
Query:  441 GRGRQVQHVQIDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQD---ARNRTPIPVHVSRKTDRSVRRMFPYLIGREDDNGADGRVVAALKFDVFQDF--KPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQL--LVCDALMTTKKHQTHFSVEDGVALAGELKAQRTFLVGLGGSIEYHETNAMLESKEREEGAPYVRLAYDGLAVDIDL 1193
            G G    ++ ID GKT+RE V+RW+       V H I  +D I+LTH+HADA+LGLDDVR++Q      +  P P+++S+ +  S+   FPYL+ ++   G + R VA + +++  D   +PF   GLK TP PV+HGEDYI  GFLFG E SR+ YISDVSR+P  +   + + G  QL  L+ D+L  T  H  H      + +   L  ++T L+G+    ++H+ N  L+   R EG P V+L++DGL V I+L
Sbjct:   72 GSGSNHNYILIDVGKTFRETVLRWF-------VHHRIPKIDSIILTHEHADAVLGLDDVRAVQPFSPTNDIDPTPIYLSQHSMDSIEEKFPYLVQKQRKEGQEIRRVAQMAWNIITDDCNQPFFASGLKFTPLPVMHGEDYICLGFLFG-EKSRVAYISDVSRIPASTEYVISKSGAGQLDLLILDSLYRTGSHNVHLCFPQTLEIVKRLCPKQTLLIGMTHEFDHHKDNEFLKEWSRREGIP-VQLSHDGLRVPINL 320          
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: A0A0A0LVQ4_CUCSA (Lactamase_B domain-containing protein n=5 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0LVQ4_CUCSA)

HSP 1 Score: 186 bits (471), Expect = 6.940e-50
Identity = 101/251 (40.24%), Postives = 147/251 (58.57%), Query Frame = 3
Query:  462 HVQIDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQD---ARNRTPIPVHVSRKTDRSVRRMFPYLIGREDDNGADGRVVAALKFDVFQDF--KPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPP--ESIDFLREQGPVQLLVCDALMTTKKHQTHFSVEDGVALAGELKAQRTFLVGLGGSIEYHETNAMLESKEREEGAPYVRLAYDGLAVDIDL 1193
            ++ ID GKT+RE V+RW+         H I  +D I+LTH+HADAILGLDD+R++Q      +  P P+++S+ +  S+   FPYL+ ++   G + R VA L + + ++   KPF   GL+  P PV+HGEDYI  GFLFG E  R+ YISDVSR+PP  E +  +   G V LL+ D L     H THF     +    +L  +R  L+G+    ++H+ N  L    + EG P V+LA+DGL + +DL
Sbjct:   83 YILIDVGKTFREQVLRWFTH-------HRIPKVDSIILTHEHADAILGLDDIRAVQPFNAVNDIDPTPIYLSQHSMESISVKFPYLVQKKLKEGQEVRRVAQLDWKIIENHHEKPFVASGLRFIPLPVMHGEDYICLGFLFG-ENYRVAYISDVSRIPPSTEHVISINGAGQVDLLILDTLYKNGSHNTHFCFPQTLDAVKKLNPKRAMLIGMTHEFDHHKDNEFLLDWSKREGIP-VQLAHDGLRIPVDL 324          
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: A0A8B8KI03_ABRPR (putative hydrolase C777.06c n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8KI03_ABRPR)

HSP 1 Score: 184 bits (468), Expect = 1.200e-49
Identity = 105/252 (41.67%), Postives = 151/252 (59.92%), Query Frame = 3
Query:  459 QHVQIDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQDARNRT---PIPVHVSRKTDRSVRRMFPYLIGREDDNGADGRVVAALKFDVFQDF--KPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQL--LVCDALMTTKKHQTHFSVEDGVALAGELKAQRTFLVGLGGSIEYHETNAMLESKEREEGAPYVRLAYDGLAVDIDL 1193
            ++V ID GKT+RE V+RW+       V H I  +D IVLTH+HADA+LGLDD+RS+Q + +     P PV++S+ +  S+ + FPY + ++   G + R V    +++  D   +PF   GLK+ P PV+HGEDYI  GFLFG E +R+ YISDVSR+P  +   + + G  QL  L+ DAL  T  H  HF +   +     L  +RT L+G+   I++H+ N  L    R EG   V+LA+DGL V I+L
Sbjct:   66 KYVLIDAGKTFRETVLRWF-------VFHHIPRIDSIVLTHEHADAVLGLDDMRSVQPSSHTNDIDPTPVYLSQHSMDSMEKRFPYFVQKKHKEGQEIRRVPQFCWNIIADDCNQPFFASGLKLIPLPVMHGEDYICLGFLFG-EKNRVAYISDVSRIPASTEYVISKSGAGQLDLLILDALRKTGSHNVHFCLPQALEAVKRLCPKRTLLIGMNHEIDHHKDNEFLREWSRREGLS-VQLAHDGLRVPINL 308          
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: A0A6J1CXF2_MOMCH (putative hydrolase C777.06c n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CXF2_MOMCH)

HSP 1 Score: 185 bits (469), Expect = 2.410e-49
Identity = 100/252 (39.68%), Postives = 147/252 (58.33%), Query Frame = 3
Query:  459 QHVQIDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQ---DARNRTPIPVHVSRKTDRSVRRMFPYLIGREDDNGADGRVVAALKFDVFQDF--KPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQL--LVCDALMTTKKHQTHFSVEDGVALAGELKAQRTFLVGLGGSIEYHETNAMLESKEREEGAPYVRLAYDGLAVDIDL 1193
            +++ ID GKT+RE V+RW+ R       H +T +D I+LTH+HADA+LGLDD+R +Q         P PV++++ T +SV   FP L+ +    G + R VA L + + +D   KPF   GL+  P PV+HGEDY+  GFLFG E  ++ Y+SDVSR PP +   + + G  QL  L+ DAL  T  H  HF +   +     +  ++  L+G+G    +H  N +L    + EG P V+LA+DGL + IDL
Sbjct:  104 KYILIDVGKTFREQVLRWFTR-------HEVTRVDSIILTHEHADAVLGLDDIRDVQPFSSTNEINPTPVYLTQDTMKSVAMRFPNLVNKGLREGQEVRRVAQLDWKIIEDSYEKPFIASGLQFIPLPVMHGEDYVCVGFLFG-EKCKVAYVSDVSRFPPSTEQVISKSGAGQLDLLILDALRRTGSHNVHFCLPQTLEAVKRICPKQAMLIGMGHEFNHHLDNELLNEWSKREGIP-VQLAHDGLKIPIDL 346          
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: V4MQ82_EUTSA (Lactamase_B domain-containing protein n=14 Tax=Brassicaceae TaxID=3700 RepID=V4MQ82_EUTSA)

HSP 1 Score: 184 bits (467), Expect = 2.580e-49
Identity = 106/252 (42.06%), Postives = 146/252 (57.94%), Query Frame = 3
Query:  459 QHVQIDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQD---ARNRTPIPVHVSRKTDRSVRRMFPYLIGREDDNGADGRVVAALKFDVFQDF--KPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQL--LVCDALMTTKKHQTHFSVEDGVALAGELKAQRTFLVGLGGSIEYHETNAMLESKEREEGAPYVRLAYDGLAVDIDL 1193
            +++QID GKT+RE V+RW+         H I  +D I+LTH+HADA+LGLDD+RS+Q      +  P P+ VS+    S+   FPYL+ ++   G + R VA L + V ++   KPF    L  TP PV+HGEDY+  GFLFG E SR+ YISDVSR PP +   + + G  QL  L+ D L  T  H TH      +     L  +R  L+G+    ++H+ N  LE   + EG P V+LA+DGL V IDL
Sbjct:   82 KYIQIDVGKTFREQVLRWFTL-------HKIPRVDSIILTHEHADAVLGLDDIRSVQPFSPTNDIDPTPIFVSQYAMDSLAVKFPYLVQKKLKEGQEVRRVAQLDWRVIEEDCEKPFVASDLSFTPLPVMHGEDYVCLGFLFG-EKSRVAYISDVSRFPPNTEYVISKSGGGQLDLLILDTLYKTGSHNTHLCFPQTLDTIKRLSPKRALLIGMTHEFDHHKDNEFLEEWSKREGIP-VKLAHDGLRVPIDL 324          
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Match: A0A1S2XA09_CICAR (putative hydrolase C777.06c n=2 Tax=NPAAA clade TaxID=2231382 RepID=A0A1S2XA09_CICAR)

HSP 1 Score: 183 bits (465), Expect = 4.470e-49
Identity = 101/251 (40.24%), Postives = 150/251 (59.76%), Query Frame = 3
Query:  462 HVQIDPGKTWREGVIRWYPRQDVFLVPHGITSLDGIVLTHDHADAILGLDDVRSLQD---ARNRTPIPVHVSRKTDRSVRRMFPYLIGREDDNGADGRVVAALKFDVFQDF--KPFEVGGLKVTPFPVLHGEDYISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQL--LVCDALMTTKKHQTHFSVEDGVALAGELKAQRTFLVGLGGSIEYHETNAMLESKEREEGAPYVRLAYDGLAVDIDL 1193
            ++ ID GKT+RE V+RW+       V H I  +D I+LTH+HADA+LGLDD+R++Q      +  P P+++S+ +  S+   FPYL+ ++   G + R VA + +++ +D   +PF   GLK TP PV+HGEDYI  GFLFG E SR+ YISDVSR+P  +   + + G  QL  L+ D+L  T  H  H      +     L  ++T L+G+    ++H+ N  L    R EG P V+L++DGL V I+L
Sbjct:   79 YILIDVGKTFRETVLRWF-------VSHRIPRIDSIILTHEHADAVLGLDDIRAVQPFSPTNDIDPTPIYLSQHSMDSIEEKFPYLVQKKRKEGQEIRRVAQIAWNIIRDDCNQPFFASGLKFTPLPVMHGEDYICLGFLFG-EKSRVAYISDVSRIPASTEYVISKSGAGQLDLLILDSLYRTGSHNVHLCFPQTLETVKRLCPKKTLLIGMTHEFDHHKDNEFLAEWSRREGIP-VQLSHDGLRVPINL 320          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4W1_ECTSI8.780e-13176.21Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JEM8_9PHAE1.030e-9977.01Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZCK6_9STRA6.630e-5555.61Beta-lactamase-like protein n=1 Tax=Tribonema minu... [more]
A0A1J7G538_LUPAN7.320e-5141.43Lactamase_B domain-containing protein n=1 Tax=Lupi... [more]
G7IP30_MEDTR1.670e-5040.31Metallo-hydrolase/oxidoreductase superfamily prote... [more]
A0A0A0LVQ4_CUCSA6.940e-5040.24Lactamase_B domain-containing protein n=5 Tax=Cucu... [more]
A0A8B8KI03_ABRPR1.200e-4941.67putative hydrolase C777.06c n=1 Tax=Abrus precator... [more]
A0A6J1CXF2_MOMCH2.410e-4939.68putative hydrolase C777.06c n=1 Tax=Momordica char... [more]
V4MQ82_EUTSA2.580e-4942.06Lactamase_B domain-containing protein n=14 Tax=Bra... [more]
A0A1S2XA09_CICAR4.470e-4940.24putative hydrolase C777.06c n=2 Tax=NPAAA clade Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:1297897..1302526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4W1
PFAMsLactamase_B_2
Model size1921
Max annot lvl2759|Eukaryota
KEGG rclassRC00296
KEGG koko:K06167
KEGG ReactionR10205
KEGG Pathwayko00440,map00440
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0016787
Exons8
Evalue4.72e-91
EggNOG OGsCOG1235@1|root,2QWBK@2759|Eukaryota
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-20_000110.1
EC3.1.4.55
DescriptionBeta-lactamase superfamily domain
Cds size504
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.99.1prot_A-nodosum_M_contig11.99.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 1298619..1299850 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866490.6126053-UTR-A-nodosum_M_contig11:1297896..12986181680866490.6126053-UTR-A-nodosum_M_contig11:1297896..1298618Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1297897..1298618 -
1680866490.6561406-UTR-A-nodosum_M_contig11:1299850..12998511680866490.6561406-UTR-A-nodosum_M_contig11:1299850..1299851Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1299851..1299851 -
1680866490.6741903-UTR-A-nodosum_M_contig11:1300118..13001831680866490.6741903-UTR-A-nodosum_M_contig11:1300118..1300183Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1300119..1300183 -
1680866490.7449694-UTR-A-nodosum_M_contig11:1300444..13005321680866490.7449694-UTR-A-nodosum_M_contig11:1300444..1300532Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1300445..1300532 -
1680866490.7550993-UTR-A-nodosum_M_contig11:1300958..13013261680866490.7550993-UTR-A-nodosum_M_contig11:1300958..1301326Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1300959..1301326 -
1680866490.7648659-UTR-A-nodosum_M_contig11:1301406..13015201680866490.7648659-UTR-A-nodosum_M_contig11:1301406..1301520Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1301407..1301520 -
1680866490.7729225-UTR-A-nodosum_M_contig11:1302467..13025261680866490.7729225-UTR-A-nodosum_M_contig11:1302467..1302526Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1302468..1302526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866490.6266403-CDS-A-nodosum_M_contig11:1298618..12988021680866490.6266403-CDS-A-nodosum_M_contig11:1298618..1298802Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1298619..1298802 -
1680866490.6371362-CDS-A-nodosum_M_contig11:1298973..12991911680866490.6371362-CDS-A-nodosum_M_contig11:1298973..1299191Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1298974..1299191 -
1680866490.6466498-CDS-A-nodosum_M_contig11:1299748..12998501680866490.6466498-CDS-A-nodosum_M_contig11:1299748..1299850Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1299749..1299850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.99.1

>prot_A-nodosum_M_contig11.99.1 ID=prot_A-nodosum_M_contig11.99.1|Name=mRNA_A-nodosum_M_contig11.99.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=168bp
MFPYLIGREDDNGADGRVVAALKFDVFQDFKPFEVGGLKVTPFPVLHGED
YISHGFLFGPEGSRICYISDVSRVPPESIDFLREQGPVQLLVCDALMTTK
KHQTHFSVEDGVALAGELKAQRTFLVGLGGSIEYHETNAMLESKEREEGA
PYVRLAYDGLAVDIDLD*
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mRNA from alignment at A-nodosum_M_contig11:1297897..1302526-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.99.1 ID=mRNA_A-nodosum_M_contig11.99.1|Name=mRNA_A-nodosum_M_contig11.99.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4630bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1297897..1302526- (Ascophyllum nodosum dioecious)
CGAAGGCCGAGGTCGCAACTCATCTTCATCGGCACGGGCTCAAGTATGGC GGTCCCAGGGTGTGTGGGGTAATTTTTTGCGCTGAATTGTTTCTGTCCTC CTTGAAGGAAGATCATTTCGGGTGTATCGGGGGCCTTCGTACAAGTCAAC GCTGCGTTGTACTGAGCGTTTGTTGGTCGCAGGCGCTAGCCGGGCCTTGG CAGTTCCAGGAGTCAAAGGGGAAAATAATAGCCGACTACAAGCTGTACCG TATCGTACCAAAAGAAGTCGATAGGGATGATGTATAGCTACCATACCAAA AAACGAGAGAAGAGACAGTTGAGCATTATAGTGGGCAGAAGGCAACGAGA CTACAGTACGCACCAAAAGAGGCCGGTACAGCAGTCGCGAGCACGTGAGA TCCAAACAAATACATACGCATAGTTATTGAAAGTTCCAAAGCCAAGCATA AGGCGATGAGTGCAAAAATAGGTTAGTAAAGTGTTTCGAAGTACTTCGTA AGGCAGTACCAAAAAGGGTCGAGACGCTCGAGTGCGGAAGAAGTTTTCAT AATGTTACAGACGAGAAATCACTTCGGGATCGTTTTGTCGCCGTCGAGAA CCACGACCAAGACGCTGATCTGATAATATGCTGCCGCAGACCTTTAATGT AGTAACATCAGGGGCTCGCTTATATTGATAGTTTCCGATCTAACCCCCCG ATAGGTGCATAACACCTCGTTTTTTACTTTACGATCTTATTCCTCCAATC GTCGAGCCTCACTTTTTATCCTGTACGATTTGCCTTCTATGGACGAGGGG TCGTGGCTTGGCGAACTACATGAGGAGAAAACTTGAAGCGACTGTTGGTT TTCATTCAAGCTACGGAGCTGTATCTTGGACTGGACCTGGTTCATCCTCC GACCAAACACAGGGGAGAGCTGTGCAATCCGTGCGAAACTTGAGTTGATT TTGCGGTCAATCGTCTTGACATCTGGGCTTGCCTGGCGGTGCGTAACGAC TCTCAGGGCATTTCATCTTCTTCATCCGGAGCGTAACTCGAGGCATACGG CCATCGCCCAGCTAGCGGTCGCGACGCCCCCGGAAACCAACAAAAACTAC AGGTTTGAAAGCACGCTCTAGTGGAGACGATTTGCTTGCAGCAGCGCTGT CCCCTTTGCCGATGCCTGTTGTTCGCCGCCCCGAAATTGCTCGGAATCAG TGCAGATGCTACAGTACCTAACCTTGCAGAGATAGTTGTCGGCGCTACGG AAATAAAAGCGATTTGCGTGTGTCATTCCGCTCAGTCAGCTTTAGAACTG GAACGAGTTACCAGATTAAAAGAGAGACCCGTGGTGACTTGTACCGTGTG CAGGGGAAATACGTCAGTCCTCGTGAGGGTGGTCAAGGACGGCGGCGGTA GCAAGGGGCGCAAGAGCGAAATGGACATCCCAGCCGTGCAAGAGATGGAT GAAGTGGAGGGTGATGAGGAAGGGGGCGGCAAGTTCAGCACGTGCAGATA GACCCGGGCAAGACATGGCGGGAGGGGGTCATCCGGTGGTATCCCAGGCA AGACGTTTTTCTTGTTCCGTCTGATCAGGCGTTGCCGATCATGCCGTGCT CTGTGAAATGTTTACCGGTCGTTTTTCTTGTTTCGTCTGATCAGGCGTTG CCGATCATGCCGTGCTCTGTGAAAATGTTTACCTGTCAACGGTTTCCTCT GTTCTCTGCGATGGGTTTCAAGCTGCGTCACTTGATGCTGCTCGGTACTG TCAACGCGCATCTTGCGTACTGTAGAGAAGATAGTTATGCTCGTTTTTGC TTTGTCTCGGGATTTGTTAGGGAGCAAGGCCTTTCGACCTTGTGAAGGCC GCAAGGATTATAGGATGCTGATGAGCGAAAATGCGATGATATGCTTCGTC TGTTTCTTTCCCCCCCCATGTTGACATAGATTTTATACGTTGTATATTAT GCTGAAGTATCATTCATGTGCGTGTCGAACGATACGTCTCACAGACACGG CATCACAAGCTTGGATGGTATAGTTTTGACGCACGATCATGCCGACGCCA TTCTGGGACTGGACGACGTCAGGAGCTTGCAGGTGCGCCGTATTTTGTTT TGTTGGCAGTGACTTCGAATTTCTCGTTGGGGGATTACTTTTAATCATGC GCCTTTTTTTGCTTGCGCGGAATGCCGTGTGTTGGACGAAACGAAACGAT GGGTGTTTTTTTTGGGTGCTTCTTATGCTTCCCCGCGCGGCCGCACTGTG TGGCAGTGAAGTTTCGAGTGAAACTCTCGATGGGCTGACAGTGCTGGCAA ACGCCGCCCCTTCGCTTTCGGCGCGGCACTTCGCATCGTACAGGACGCCA GAAACAGGACCCCGATACCTGTCCACGTCTCGAGAAAAACCGATCGCTCC GTGAGGAGGTAAGAGGCGAAGCTTCGAGCATGTTCGCAAGTTGATGCTGA AAGCATGCGTAGCTCTGACAGCCTGGTTGCTGACGGTGGAGTTTTACCGC TCTCTTGACTGCCGGATCGTACAATGGATTGCACTGCGTGACGCGTGAAG ATGCAGGCCCTACGCACGTTTTGGCCTCCACAAAGCGTAGGCATGTATAT CACCTGCTGCAATCCTCTAGCAGATAGAAAATACTTGAGTCGAGGTCGTT TGGATTTCGGTGAATGCCTCCGCAGGATGTTTCCTTATCTGATTGGTCGC GAGGACGACAACGGGGCGGACGGGAGGGTTGTGGCAGCCTTGAAGTTTGA CGTCTTCCAAGACTTTAAGCCATTCGAGGTAAGTCTGAAAAATCAAAAGT AATGGAGACATGAGAGTCTAGTTTTAGTGCTATGATATACACACTCCGGT ATTGGAAACCCGCACGCTTGTTGAGCCTTTGTTGCAGGGTGACACGATAG GGGCAGAAAAGTCCTTTGGCATACAAAACTTTCTCAGCACCACAGGCCAT GAAAACGAGCACCGCAAACGAAATCTTCAAAGACCCACTGTGATTGGAAA GTGTCACAGAGCAACCCTGGAAGTTTCACAAAGCAAAACAAGCGGAGGCA TTTTATTGAACCGGAGAGGTGTTGATACCCTATCGTCTTCGCTTCTGCTT GCTCCGTCGTTGGCTGCTCCTTCCCTTCGCCTCGTCCTTTCCTTTTTCAA CTATGCCGCAAACGCATCTCACTCGATTTCTACGTGCGTATGGCCACTTG TACGTCCCTTCTGATTTTCACATTATACTGTCGGAAACACCACAGCTGTA TTTTTACCACAGTGTCGTAGTCTTCTTATTTGACAGTTTGTTTTCTCCGT GTCGCCAACTGGCGGCGTTTTGGTTCGCGCGTAAGGTTGGAGGGTTGAAA GTGACCCCTTTTCCGGTGCTCCATGGGGAGGACTATATCTCCCACGGATT TCTGTTCGGTCCTGAGGGATCAAGGATCTGCTACATTTCGGACGTTAGCC GAGTGCCGCCGGAGAGCATAGATTTCTTGCGGGAGCAAGGTCCCGTGCAG CTCCTCGTCTGCGACGCCCTCATGACGACTAAAAAACACCAAACACACTT CAGGTGCGCTAAAATGTGTTCCGATCTCGAAACGAATGAATGAACAGCGC TACTGCTCTCTGTGCTCATGGGTTTCACCTGTTGACGTAGACGATGCGGC AACAAAATGCTGTCCTCCAGCCTAATCGTTCCTTAATTTCCATGCGATTC GATCTGAAAAACATGGACAACCAGCGTTGAAGACGGCGTGGCTTTAGCGG GCGAGCTCAAGGCGCAAAGGACTTTCCTGGTAGGACTAGGAGGCAGCATC GAATATCACGAGACCAACGCGATGCTGGAGTCCAAGGAGAGAGAAGAAGG GGCTCCCTACGTCAGGCTGGCCTACGACGGACTAGCCGTGGACATTGATC TGGATTAGAGACGGACGGAGTACGCCAGTGCAAATGATGTTGAAATAGCG ACTTCGTCTTCATGCTATGGGATATCTTCCGTTTTTTTTCCACTTGGTTT TTAAGGCTTGACGCCTACCGGTTTTGTCTTGATGTTCTTCTGTTTGTGGC TAATGTGGCCTAAAATACTGAAGGTTGAATAGAAGATATCCTGGCCGCCT CTCCACTCGAGGTTTGCGTTTTCGGGCTAATCCATAGCCCCTTGGATTCG AGCATCAAGATTTGCAGTCGGCCAGCCTTTCGGGCCTACCGTAGGAGAGC GCTTACACGTTTCATTACACGCCCCTGGGACCGGTATCCTTTTTGCCGAT TTTATTGGCAACAAGACCTGCAAAAAAATGATAAGTTATTCATTGGGTTT CTGGAAAGGCTTGGCCGATCTTTCCCAGATCTACACACAGTTGAATGAGT GTTCCCTTTCCTCTGGGCACTTAACTCGTTTTCCCTTTCCCTTAAGCTAC CCTTACGAGTGGAGTAGCATCAACAGTATTAATTGTACGAAAGCAAGTGG CGTTGCCCAAGCGTTCGGTTTTCTGTCGAATCTTGAGTCTGGTGCAATGC TTATCAGGTCGGAGATTCGGCTCGGATTGACCTCTCAGGTTTACGCAGTG TCCAACAAGGACCACCGTACGCAACGCAGGGAAATGGGGCCGCGGGTTTT CATGGCTGGCAAAACACGGCTGTTTATCAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:1297897..1302526-

>mRNA_A-nodosum_M_contig11.99.1 ID=mRNA_A-nodosum_M_contig11.99.1|Name=mRNA_A-nodosum_M_contig11.99.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1297897..1302526- (Ascophyllum nodosum dioecious)
ATGTTTCCTTATCTGATTGGTCGCGAGGACGACAACGGGGCGGACGGGAG
GGTTGTGGCAGCCTTGAAGTTTGACGTCTTCCAAGACTTTAAGCCATTCG
AGGTTGGAGGGTTGAAAGTGACCCCTTTTCCGGTGCTCCATGGGGAGGAC
TATATCTCCCACGGATTTCTGTTCGGTCCTGAGGGATCAAGGATCTGCTA
CATTTCGGACGTTAGCCGAGTGCCGCCGGAGAGCATAGATTTCTTGCGGG
AGCAAGGTCCCGTGCAGCTCCTCGTCTGCGACGCCCTCATGACGACTAAA
AAACACCAAACACACTTCAGCGTTGAAGACGGCGTGGCTTTAGCGGGCGA
GCTCAAGGCGCAAAGGACTTTCCTGGTAGGACTAGGAGGCAGCATCGAAT
ATCACGAGACCAACGCGATGCTGGAGTCCAAGGAGAGAGAAGAAGGGGCT
CCCTACGTCAGGCTGGCCTACGACGGACTAGCCGTGGACATTGATCTGGA
TTAG
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