mRNA_A-nodosum_M_contig11.96.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.96.2
Unique NamemRNA_A-nodosum_M_contig11.96.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.96.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:1270603..1275156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size972
Hectar predicted targeting categoryother localisation
Exons4
Cds size732
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866484.8219209-CDS-A-nodosum_M_contig11:1270602..12706991680866484.8219209-CDS-A-nodosum_M_contig11:1270602..1270699Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1270603..1270699 -
1680866484.8309681-CDS-A-nodosum_M_contig11:1271034..12712911680866484.8309681-CDS-A-nodosum_M_contig11:1271034..1271291Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1271035..1271291 -
1680866484.8399518-CDS-A-nodosum_M_contig11:1271425..12717641680866484.8399518-CDS-A-nodosum_M_contig11:1271425..1271764Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1271426..1271764 -
1680866484.9203584-CDS-A-nodosum_M_contig11:1274879..12749181680866484.9203584-CDS-A-nodosum_M_contig11:1274879..1274918Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1274880..1274918 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866484.9301617-UTR-A-nodosum_M_contig11:1274918..12751561680866484.9301617-UTR-A-nodosum_M_contig11:1274918..1275156Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1274919..1275156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.96.2prot_A-nodosum_M_contig11.96.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 1270603..1274918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.96.2

>prot_A-nodosum_M_contig11.96.2 ID=prot_A-nodosum_M_contig11.96.2|Name=mRNA_A-nodosum_M_contig11.96.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=244bp
MDISAESTALRVQTKMSLTPRSVTTADGSAKNRTTSEGTSNALGGGNRWQ
PLENDAGCLQRELAKPPKSPGEFEPVPINEGSFVRGEMLTRQSGQRNIGE
QSEILERGGYDRGIVAETLGGGTALEVDDGAADRGPKEGDEEKGSAQQIL
IGWIQTRQRECATLISLCCVTATFVDYLRNDVSNILSFAVAFIPLVVNLL
LARDIFIKWDKRRRRRQQRLAFLGEDACNQGKNLQNEAPGEGGV
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mRNA from alignment at A-nodosum_M_contig11:1270603..1275156-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.96.2 ID=mRNA_A-nodosum_M_contig11.96.2|Name=mRNA_A-nodosum_M_contig11.96.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4554bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1270603..1275156- (Ascophyllum nodosum dioecious)
GACTTCCTTCCGCCACTGCTGAGATTACGCTTAGACGCAGCTTAAAATCC
CGCGAAAAATAACTCCTTAGTCGTATCCCCAACTCGACAGATCCTCGTCC
GAGGCTGCGTAAGATCAACCTTGCTCTCATATTTGTCACGCCGTGCGGGA
GTTGAGGCCGAGCTCAGACTCAGCGATAGTTTATCGCACGCCGTCGAGCA
TACCAGCTGCATTCTGAACTCAGCTCAGTATCATCGTGATGGACATATCT
GCTGAGTCCACTGCCTTACGGGTGCAGGTGAAAATGATATACTGTACAAA
GAAAGACTGATTCAGATGTCTCTTGTGAGGACGGCACATCCTGCTTCCAT
CGGCATTTTCACTTACTTGTTGATTGAGTGACTATACTAACGCCTTCTAT
AGGTACTTGCATTTCCAGATGGCCCCTTGCTCTGCAGCAGAGCAGTTGTA
GACCCCGCTCCCCGCAAAACCTGCCCCATGTAGTAGACTTAGCAGACCAT
TCTAAACAATCTTGACACAGCCGCTATTGGTCGTACAAATGAAGTTGTTG
TTTAAAGAAAAATCTGAACAACATATTATATCCGCCGGGGTTCCTGTACG
GCCCTAGGTCCTAGGCTTGATATTTCGCTGAAGCGTACACGTATTGCTGT
GATCGTAAAACCAAATGTTCTGGTAGAGCGACGCTCTAAGAGTAATCCGC
GACAAGCAAGGTTTGTACAGTGATCGCAACTATTAATAATCAGATCGGCG
TACTTTAAAAGGGAGGGTGTGGTAATCCGCAGATAGATCTAGAGAAGAGG
CAGACGACACCAGCACGGCAACACCGACCTCCACGCAAGGGAGATACGAC
TAATGCTCTAGAGGGAGAACGACGCGAGTCAAGGTTTACGTTGCGCCAGC
AGTTTTGCCCTTGCCTATCGTTAGATTATGATTTGCAGCGTAGACGACGA
GCGTGAGCGAACGTCATGTTCGTTTGAGAAGGGTGCATCACCCCGCGGGC
CGCAAACGCTCAGCACCATACAACACGATCACCTCCAAATTCCGACAGCA
GAGACACCTGAAAGACTGCGCGGACTGTTAGGGCTGGTTTCTTGAGATTT
TTAGTTACACAAAAGTGACGTGTTGCTAGCCATGATGTACATGAAAACCG
TGAGCCTCACATGTCCGTAAGCTTTAATCATTACCCAAACCATCCGTAAT
TTCCACTACTACTATAATAATCGTCCTGCATGCTGTCATAGTCTAAATCT
AACATTTTCGTGAAATAAAGAACAAACTATTTTTTTAAGAACGAGGATTG
GTACATTTCAAGGAGCCAGGCGATAGATTGATTACAAGCGGACATCACCA
TTCTCCAATTTTAAAAGCAATTGAAGTTCGAGATGTTTGTTTCTGAAAAT
AACGTCTGTGAGACGGATGAACAAATAGTTTAACGAACTCTTCATTTTGC
GACCAAACAAGTTCTTCCGATTTGGAGTCGAACGGATTATTTTCCGAGAT
ATACAATCGGAAACGATTCCGATGAAACACATTTTGCATAAAGAAATTTT
ACAACTGCTTATCGGAAACATTTTCACGTTCTTATATGGCATTTCTAAAT
TCTGTTGGTCGTCACAGATATGAGTAGTCACTTTGAAGCACTTGTTTGGG
CAAACAATTATTACCAGACACGTCTACCCCACAGGCCCCTTTAAACGTAG
CAATCTTCGTTCTTTAAAAAATACAACATTTTGGTGAAATAAAGAACGAA
GTATTTTTTAAAGAACGAAGATTGCTACGTTTAAAGGGGCTTGTGGGGTT
TGTTGTTGTTGTTTCTCACATTCAGCGCATTGGTTGCCAACCCGAAAAAA
AACTACTTTACACGGTGGCCAATCCCGCTCGTGGTCTGCTGAACAGGGAA
AAAAGAAAAAGAAAAAGTCTGGCAGCGCACCCCCCCCCGTGTCTGGTAAT
AATTGTTTGCCCAAACAAGTGCTTCAAAGTGACTACTCATATCTGTGACA
ACCAACAGAATTTAGAAACGCCATATAAGAACGTGGAAATGTTTCCGATA
GCAGTTGTGAAATTTCTTTATGCAAAATGTATTTCATATTGTAGATAACA
TAGTATAAAGTCCCCTAGATGGGCGGGTTGTAAAACGGCAATGTAACATT
GTTTTACCATTTCTATAATATCATAACGTTCTCATGTACTACTGAGCTTA
ATGCTGTATGACATTATTGCTCGATGACATCATATAGCATTATTACTATG
GTACTGCACTGTATTGGACTTTCTTTTCTTTCTTTTTTTTCTATCATCTC
ACTACTTATAGCCGATGGACCTCATCATTACCATTCTGCCTGTGGTCACA
AAGGATCTTCCCATCTCTCCCCGGTTCACGCCTTACAATTTTTTTTATCG
CGATGCAAGTTCAGCACTCTTACAACTCGTCAACCAATGGTGGGTACACT
AATAAATGACTACGCGCGTGCTGATCTTTCGTTAAATACGTGTTACAATA
GTTATTGGACAATTTCCCAGTATTACGTCTACATCTATACTACTTGTAGA
TCCCCTTCATCGATACCCATCCCATCCTACATGTAATGTAACAAATTGAG
CTGTAATCCAAGCTTATCGTGTCTTGTGTCTTTGTTTTTGTTTGGTGTCA
CTGCATGGCCATTAATGGAATTGTACAGCAAAATGGTGAGTTTCTCCCAG
ACATTTTACTGTTGGCCCAAGCCCATATTTTTGTATGGTTTTGATGGCAG
CACTATTATCGTACCTTATTATTATTATTATTTATTATCATCTTAGAGCT
CTAACTATGTACTACAGTGTCTTATGTTTTGTTATGTTTGGTGGCTCTGC
ATGGTGATTAATATAAGTGTACGGTATAACGGTGGGTTTTTCCCCGACAT
TATACTATTGACCCAAGGTTACTACCATCGGGGAACCCGTTTAAGTGGCT
TTGCCTATATAGCCTATGTAAAAGTATATTATTTCTATTACTACCATGTG
TGATGGTGTACTACATTGTCTTTGTTTTGTTTTTACTGTTTTTCTGGCGT
CCCTGCATGGCGATCAATGTAAGTGTGCAGTATAACGGTGGGCTTCTCCC
CGACATTATACTGTTGACCCAATGTTACTACCATCGGGGAACCCGTTTAA
ATGCCCTGAAGAGGTTCTGTATTTGCAGTCTATGATCCCACCTAAACGTT
TTGACATTTCCCCTCCCCTAACTGGGGGATGCTCAGAAGGCCTAGGCGCG
TTTTGATTTTTCTTTAAACAAACAACGATCCATCTGCGTTGCACCGGACG
ACATTTTGGACTACTTGCCTTTTTGATGAAATAGACAGTTCAGCTTCGTT
TCTCCTGTTCATCTTTTGTCTCTCGTTAACTTGATTTTGAAGACGAAGAT
GAGTCTCACGCCGCGGAGCGTTACTACTGCTGATGGATCTGCAAAAAACA
GAACGACATCAGAGGGGACGTCAAACGCTCTGGGAGGAGGAAATAGATGG
CAACCCTTGGAAAATGATGCAGGATGTCTCCAGCGCGAACTCGCTAAGCC
CCCCAAATCTCCGGGTGAATTTGAACCCGTTCCAATTAACGAAGGATCGT
TCGTTAGAGGGGAGATGCTTACGAGGCAAAGTGGGCAGAGGAATATTGGA
GAACAAAGCGAGATCCTTGAACGGGGGGGCTATGACCGTGGGATCGTGGC
CGAGACCTTGGGCGGTGGGACTGCCCTAGAGGTGGGCGTGGAGAGCACGA
TGATGCTGTATCCAAAGCTGGCAACACATAAAAACGTAATATCGTACCAA
ACTTAGTTTAACGAACCATACAGTGCACTACATTTCTCGTACTTGGACAT
TGTGGTATGATGAAGGTCGACGATGGAGCTGCAGACCGAGGCCCGAAAGA
GGGAGATGAAGAGAAGGGGAGTGCTCAGCAGATTTTAATAGGATGGATAC
AAACCAGGCAACGAGAATGCGCAACGCTCATCAGTCTCTGCTGCGTCACG
GCGACCTTTGTCGACTACCTACGAAATGATGTCTCCAACATCCTGAGCTT
TGCAGTCGCTTTTATTCCCCTTGTGGTGAATCTCCTACTCGCGCGCGACA
TCTTCATCAAGTGGGATAAAAGGTGTCAGAAGATTTGTTAATCATGCGTG
TCGTGGTTTGGGAATACTCTAGTAACTCACCATAGACGTTTCAAATGCCG
CAGACATATTTTATCCCCATGAAAAGAAACTCACGATGACCACAAGTCCT
GTTTTCCGAAACAGTCGTTTTCGGCTCCACATGGCAAGCAATGGGGCATC
CTCTTTCTAGACTCAGGGATCAGTTATATCCTCAGCTCCAACATATCGAC
CTTGACCGAACCCACGCCCCCTCGGAATCTCATAGGCCACGGTTTTACCA
CCTCTACTGTACCTTCCCCTACCGTCAACTTCCACGACATCTCTTGAACT
TTTAAAGACGACGAAGGCGACAACAACGACTCGCCTTCCTTGGGGAGGAT
GCCTGTAACCAAGGGAAGAACCTACAAAATGAGGCGCCTGGCGAGGGGGG
CGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:1270603..1275156-

>mRNA_A-nodosum_M_contig11.96.2 ID=mRNA_A-nodosum_M_contig11.96.2|Name=mRNA_A-nodosum_M_contig11.96.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1270603..1275156- (Ascophyllum nodosum dioecious)
ATGGACATATCTGCTGAGTCCACTGCCTTACGGGTGCAGACGAAGATGAG
TCTCACGCCGCGGAGCGTTACTACTGCTGATGGATCTGCAAAAAACAGAA
CGACATCAGAGGGGACGTCAAACGCTCTGGGAGGAGGAAATAGATGGCAA
CCCTTGGAAAATGATGCAGGATGTCTCCAGCGCGAACTCGCTAAGCCCCC
CAAATCTCCGGGTGAATTTGAACCCGTTCCAATTAACGAAGGATCGTTCG
TTAGAGGGGAGATGCTTACGAGGCAAAGTGGGCAGAGGAATATTGGAGAA
CAAAGCGAGATCCTTGAACGGGGGGGCTATGACCGTGGGATCGTGGCCGA
GACCTTGGGCGGTGGGACTGCCCTAGAGGTCGACGATGGAGCTGCAGACC
GAGGCCCGAAAGAGGGAGATGAAGAGAAGGGGAGTGCTCAGCAGATTTTA
ATAGGATGGATACAAACCAGGCAACGAGAATGCGCAACGCTCATCAGTCT
CTGCTGCGTCACGGCGACCTTTGTCGACTACCTACGAAATGATGTCTCCA
ACATCCTGAGCTTTGCAGTCGCTTTTATTCCCCTTGTGGTGAATCTCCTA
CTCGCGCGCGACATCTTCATCAAGTGGGATAAAAGACGACGAAGGCGACA
ACAACGACTCGCCTTCCTTGGGGAGGATGCCTGTAACCAAGGGAAGAACC
TACAAAATGAGGCGCCTGGCGAGGGGGGCGTC
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