mRNA_A-nodosum_M_contig11.82.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.82.1
Unique NamemRNA_A-nodosum_M_contig11.82.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:1133105..1136224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866484.7451708-CDS-A-nodosum_M_contig11:1133104..11331821680866484.7451708-CDS-A-nodosum_M_contig11:1133104..1133182Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1133105..1133182 +
1680866484.755515-CDS-A-nodosum_M_contig11:1136145..11362231680866484.755515-CDS-A-nodosum_M_contig11:1136145..1136223Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1136146..1136223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.82.1prot_A-nodosum_M_contig11.82.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 1133105..1136223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.82.1

>prot_A-nodosum_M_contig11.82.1 ID=prot_A-nodosum_M_contig11.82.1|Name=mRNA_A-nodosum_M_contig11.82.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
VLAHNLGHGGARTILRQPRRVATRMRQVLKRQKKRGRGDDVAYVLARTVR
SC
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mRNA from alignment at A-nodosum_M_contig11:1133105..1136224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.82.1 ID=mRNA_A-nodosum_M_contig11.82.1|Name=mRNA_A-nodosum_M_contig11.82.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3120bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1133105..1136224+ (Ascophyllum nodosum dioecious)
GTGCTTGCACACAACCTAGGCCACGGTGGAGCAAGGACCATCCTCAGGCA
ACCTCGACGTGTGGCCACGAGAATGCGGGCGAGGTAGCTAGCATATCGAT
GAAGGTTAGTGACCCTCCTCGGAGAATAGGTTTATTGTCCTGGTGTGCAG
CCTCGGTACCAGACGGAAGTTTAGAGTACACCTTACAGCACCTGCTGTCT
TTCAAAATATCGTTTACTGTTGTTTTGTAGACAAAAAAATGTTTGTGGTC
ATCTTGACCTCTACATGGTAGTACTGTATTGGGCTGTATGTATGTATGTA
TGTATGTATTTATTAAATTGCACATAACCACGCAATCCGGCCCTGTCATC
CTAGTCATTCTATGCCACTATTTCCTCCCGAGGGGATCAATAAATTGCGA
AAACCTCTGATACTTGTACAATTCTTACTTAAGCTCAGAGTTCCTTGTGT
ATGTATGTATTTATTAAATTGCACATAACCGCGCAATCCGGCCCTGTAAT
CTACTCATTCTATGCTACTGTATGTAACCCACCTGGGGGTTACTTATCGT
AAACACATTCTCGGCTAGAAATGCGCGTGCACACAGCTACAACTCCTCTC
CCCGCTACGACCGCTCTCGGCCGGAACCGTAAAGCTGGTTTCTCGCCGCT
TGTCGCAACAAATAGAGACGGATATTCGACAAACAGGGAGCACCATGACC
AGCTCTCCTTGTAACCTCCCCCTCCAAACCCAAAAATCTCGCCCCCCCAT
CAAACCGTGCGACGTACTGCAGCAGTGGTGTCGTCATTCCGCCCTCTTCC
CCCTTCAACACCCAATCGGTGCGTGTCCCGACTACACCCGCGCATCTTTT
CTTTCTACGTAAGAAAATCCCCGCCAGCCAAAAGGCCCGGGTTGGAACAT
CAACCGTAAGTCTTGCACGGGGCGCTAATCGTGAGGTTAAGGAGAGAGTC
AAGGGTAAAGCTAGTCGGGTACAAAGTACCCGAATAGGGTCTGCGCTCGT
GTGTGTACGCCGGAACGTCCAACATCTTGAGCTAAAACTCTCCAAGTCCA
CACGATTTGTGCTCGTTACTGTCGTCATGGTTGCTGTACCCACCGGTTGC
GTAGTAAGTCCTCCTCCACTATTTTCCCAAAACATGCAGTCACACGAAAA
ACCCCCACAAGCCATAGGGCACAGGATGTACCACCAACCGTAAGTCTGGC
GCTGGGCGCGAATCGTAAGGGCAAGTGAAGAGTCAAGGGTAAAGCTAGTC
GGATACAAAGTAGCCGAATAGGGTCTGCGCTCGTGTGTGTACGTCGAAAC
GCACAGCATCCCGAGCTAAAACTTCCCGAGTCCACGCGATTTGTGCTCAA
TACTGTTCTAATAGTTGCTGTGTCCACTCGTGGGCCCACCGGCGCAAGTC
CTCCTCCCTCTCGTCCCGAAACATACAGTCACACGAAAAATCCTTCACAA
GCCCTAGGGGCACGAGGTGAAGCACCAACCATGAGTTTTGTGCTGGGCAC
AGATCCTGAGGGCAAGGAGAGAGTCAAGGGTAAGCTAGTCGGATACAAAG
TAGCCGAATAGGGTCTGCGCTCGGATGTGTACGCCGGAACGCCCAACATC
TCGAGCTAAAACTTCTCGAATCCACGTGATTTGTGCTCAATACTGTTCTC
ATGTTTGCTGTACCCACCTGTGGGCCCATCGGTTGCCCAGTAAGTCCTCC
TCCCCTATCGTACCAAAACATACAGTCACACGAAAAATCCCCCACATGCC
CTAGGGCACGAAGTGAAGCACCAACCACGAGTTTTGTGCTGGGCACAAAT
CCTGAGGGCAAGGAGAGAGTATGTATGTATGTATTGTTGAGATTGTGGAA
CACCCTGTTCAGATAATGTGCCGGTGCTCTGTACAACAGACAGTATATTG
CAATATGTATGTATGTATGTATGTATGTATGTATGTATGTATTTATTAAA
TTGCACATAACCACGCAATCCGGCCCTGTCATCCAGTATGTATGTATATT
TATTATATTGCACACAACGAACCGCGCAATCCGGCCGTCATCCGAGTCAT
TCTATGCCACTCGCATTGATCCTCCCAAGGGGGAATCAATGATACTTGTA
TGTATGTATGTATGTATTGTAGAGATTGTGATTGATTCCGTGTCAGAAGA
TGTGCTGGTGCTCTGTACAACATTATATTGTAGAAATGCGTCTGCTGCAC
TAGATATGTTTTGTGTCCAAAGCTTATTACTATACACAACAGTAGTGTTG
TACAGTTATGGGCGACCTAATTTGTTCCGTTTTTTATGTACGAGCGTACA
TACATTACAACCCACTTCATACCAATAGTAGTGATGAATAAGAGAGGCGC
ATATCATTTGGTCCACGTTTATCTGCGCACCGGTTAGCTGAGGTACCTTG
ATGAGAACAATACTGGCCTTGAGGTCAGCGGACTCTCGGCAGTGAACGCC
ATCGGAACCCAAATGCGTGACCCGACGAACTCGTGACTGACCCGATGGTG
TATGGTGGTATACAAAAATGTATGCCGCCTGTGAAATCTTGAGAACTCCC
GTAAGTAAGTACCCGATTCAGCGTGAGTGTGGCGAATGAGAAGGCTGGCG
CGGGACGGGACGGCCGAACCCGTCTCGCGAGATCAAAATCTCCGACGCGA
ACGCGGACAGGGAAAATAAATGCTAATTTTCCTTGTTCATCTGATCACGT
GCAGGAATGACTACCTTACCCGGTTGATCCATACTCTTGCTATATGTGTG
ACCATACACTATATGTTGCGTGTCACGACAAGATGGGTCATTCACTGCTG
TATCCCCCCTCTTATTTTTATACCCTACACCTAGCTGTAAAACTATAGGT
AGTTTAGATTTCCGAGTTCATTACGGGAAGGATGCATGCACACATTTTTT
TTAGAGCGCCGGTTGATTCTTACATTGTGTAGGGGTTTAGATTTCCGGTC
TATCGGCTGTAGGCCTTTTATAGATCGATAAGCTTCACAGGCTTGCCTAA
CTAACAACGCTCTTTTTCATTTGTATGCCGTGTCCCCGCAGCAAGTGCTG
AAGCGGCAAAAGAAGAGGGGAAGAGGAGATGATGTGGCGTACGTGCTCGC
TCGGACAGTTCGCTCCTGCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:1133105..1136224+

>mRNA_A-nodosum_M_contig11.82.1 ID=mRNA_A-nodosum_M_contig11.82.1|Name=mRNA_A-nodosum_M_contig11.82.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1133105..1136224+ (Ascophyllum nodosum dioecious)
GTGCTTGCACACAACCTAGGCCACGGTGGAGCAAGGACCATCCTCAGGCA
ACCTCGACGTGTGGCCACGAGAATGCGGCAAGTGCTGAAGCGGCAAAAGA
AGAGGGGAAGAGGAGATGATGTGGCGTACGTGCTCGCTCGGACAGTTCGC
TCCTGC
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