mRNA_A-nodosum_M_contig11.76.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.76.1
Unique NamemRNA_A-nodosum_M_contig11.76.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11.76.1 vs. uniprot
Match: D7G4T9_ECTSI (Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T9_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.310e-32
Identity = 151/166 (90.96%), Postives = 157/166 (94.58%), Query Frame = 1 
Query:    1 MAAPPKPLVVDIHTSVKDGDMTKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHEDIAKILLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDVDANEPGEDFESGVPENLRDEIRSMIEQT 498
            MAAPPKPL VDIHTSVK+GDM KVLEFLEEGGDVNVRCRYRTIPLHRAAAYNH+DIA +L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDVDANEPGED E  VPEN+R +IRSMIE +
Sbjct:    1 MAAPPKPLSVDIHTSVKEGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIASLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDVDANEPGEDSEPSVPENVRSQIRSMIENS 166
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4T9_ECTSI2.310e-3290.96Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:1024625..1027581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4T9
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,Pkinase,ZZ
Model size1705
Max annot lvl2759|Eukaryota
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.79e-37
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-20_000380.1
Descriptionspectrin binding
Cds size501
COG categoryI
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866489.6718776-CDS-A-nodosum_M_contig11:1024624..10247401680866489.6718776-CDS-A-nodosum_M_contig11:1024624..1024740Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1024625..1024740 +
1680866489.6865788-CDS-A-nodosum_M_contig11:1025377..10254651680866489.6865788-CDS-A-nodosum_M_contig11:1025377..1025465Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1025378..1025465 +
1680866489.699279-CDS-A-nodosum_M_contig11:1025738..10258551680866489.699279-CDS-A-nodosum_M_contig11:1025738..1025855Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1025739..1025855 +
1680866489.7118967-CDS-A-nodosum_M_contig11:1026197..10263771680866489.7118967-CDS-A-nodosum_M_contig11:1026197..1026377Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1026198..1026377 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866489.8428035-UTR-A-nodosum_M_contig11:1026377..10275811680866489.8428035-UTR-A-nodosum_M_contig11:1026377..1027581Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1026378..1027581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.76.1prot_A-nodosum_M_contig11.76.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 1024625..1026377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.76.1

>prot_A-nodosum_M_contig11.76.1 ID=prot_A-nodosum_M_contig11.76.1|Name=mRNA_A-nodosum_M_contig11.76.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=167bp
MAAPPKPLVVDIHTSVKDGDMTKVLEFLEEGGDVNVRCRYRTIPLHRAAA
YNHEDIAKILLEKGADLEARDGVGHTPLFWACRRGHTSMADLLLSKGAHI
DAQDKKERTPLHEAARHGHKETCALLLKRGAKRDIMDVDANEPGEDFESG
VPENLRDEIRSMIEQT*
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mRNA from alignment at A-nodosum_M_contig11:1024625..1027581+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.76.1 ID=mRNA_A-nodosum_M_contig11.76.1|Name=mRNA_A-nodosum_M_contig11.76.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2957bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1024625..1027581+ (Ascophyllum nodosum dioecious)
ATGGCTGCCCCTCCCAAGCCTCTTGTCGTTGACATCCACACCTCGGTCAA
GGATGGGGACATGACGAAGGTGCTCGAGTTCTTGGAAGAAGGCGGGGACG
TCAACGTACGGTGCAGGTGCTCCACGTGCATTACAGCAGATATACATCGA
TGTTTTGAAAGATAAGCTAAAACGGTTGACGGCATTGACTTGGCTCCAAG
AGGTTCGCATAATACCATACTCAGAAGGTCTAGACTAGATGCTTTCAGTT
TAAAAAACAAACAAACAAACAGAGCCGGAGTACGGAGAATGAGTAGGCTG
ACGCGGGGCGGGACGGCCGAACCCGTCTCGCGAGACCAAATTCTCAAGCG
CGAACGGGGACAGGCAAGTATTCATTTTCTCTGTCTTCATTTTCGCTGTC
CAGCTGACAACGACCGGGGATTGCAACCTTACCCGGGTGGTCAATACTCT
GCCACATGTGATGACCATACATACATACCTGGTACATACCTGAGCTTAGG
TTTGGTTGTGCGATTTATACCAGACCGGACGGGAAGGGGTCAACACCCGG
CGGCATCCGCAGGCACTCTTCCCCCGCCACTTGTATCCGGTGTACGGTGC
ACGTGCCTTGCAGCCACGAGCCCGGCTTGACTCCAAAGCTCCGCCCTCGA
ATCACTGCTCATATGTCGGTACGAGAGACGCCAGCAGTTGGTTACGTCTA
CCACCCGAACTATCGTGTCCACCATCAGCACTGTCATCATCGTGCGCCGT
CAGGTACCGCACGATCCCGCTGCACCGGGCTGCGGCGTACAATCACGAGG
ACATCGCCAAGATTCTGCTCGAGAAAGGCGCCGACTTGGAGGTCTGAGAG
AGTATTTCTTTGAACTGTGTGCATGGAGGTACTGAAGATTTATTGCAGAA
CAAGAACACCGCGGTATTCTGCGTACAACAACGGTACTACTGTACAAGAG
AGCTCTTATATATCTCTGGAGCTAACGCTGCTCTAGACTCCTGTATTTAC
TCGAGGATTTTGGTTTACGTCAAGGCTGAACACAGGGAAACTCGTACATG
CCTTTGATCATTCGACCACCTATTATGTGCACGTTGCGTTGATTATTGTC
TGAATCCGCGGTAGGCACGAGATGGGGTCGGGCACACTCCCCTTTTCTGG
GCGTGTCGACGAGGACACACGAGCATGGCCGACCTTCTCCTCTCGAAAGG
GGCGCACATCGACGCACAAGACAAAAAGGAGGTGCGTCGCCGACTGCGCG
GCGTCTAGCTCCAAACCACGCTTAGCACCCGAGCCAGTACTCTTTGTCTT
TCCACGCGAGGCGGCGGCAACTGGCTAGCTCAGGTCCTGAAGTCTCTACT
CGTAGGCGACACGATTGATTAGGCGCGAAATATTCCATACAATTTGCAGG
TCATTTATCTCGAGAAGCTTGTCGGGGTCTTGTTACCCTTGCCTCCGTAG
CAGTACACACCTCGTTTGTACCATAAATAATGCCGTCATGGCGTTCAACT
CGTTTCACGACGGAACGCAGGCCCCCCTCAGTTCCTACGCCACCGTGTCA
TGTATGCTGCACATCCCATTCAGCGAACCCCTTTACACGAAGCGGCGCGG
CATGGGCATAAAGAGACCTGCGCGCTTCTCCTCAAGAGAGGAGCCAAGCG
AGATATTATGGATGTCGATGCGAACGAACCAGGGGAGGACTTCGAATCGG
GCGTGCCAGAGAACCTTCGTGATGAGATTCGGTCGATGATCGAACAAACG
TGACGATGGCGGATAGGCGAATCCTTGGATCCCTCACTGGTGCGTACTCG
TCGAGAGTACCAGTATATACTGATCGCGTGATCGGGAATCCGGGGTGGTC
TTACATCAGCGCACGGGTGCTTTTAGGTGGTGTGGTGTAGATAGTTTAGA
GGGGAACGGAAAAATGAGCGAAGATTAAATTGTATATTATGCCCTCACTG
ATGAATTGTGTGTGTGTGTGTGTTTTCATCCCATTTATTCTTGACGTCAG
GTTTGTGGACGTACCGGCCGGGGTCACACAGGAAGATCACGCAGGAAACT
GATGAGTTGTGTGTGTTTGTATCCCATGTATTCTGGACGTCAGGTTTGTG
GACGTACCAACCGGGGTCACCCAGGATTTCTCATCCACCTTCCTTTCTGC
GGAGCGTGCCTTAATTTTTCTCGCGAGAAAGATTCAGCCGTTCCTTTCCC
TCGTCGACTGTGAAGTCGAATTTTGTGTGCTAACGATTTAATCGTTCTCC
ACCTGTTGGGCATTTATTTTTATTTTTGGTGAGGAAAAGTCCCAGTTTGT
GTGACGACACCGAGATTCGAACTCGCGTCCCAACGTCAGAAAGTTTCGAG
GTTACCAACTGAACCACCAAGGCGACCGGTTGTCGTGCGGTTGCCCAAAG
TGGAAATATAAAACGCAGCCCGACCTCACGTATACAGTGCTACTTATAGG
GTCGACAGTTGTTCAGGACTGCATTTATGTTCCCCTTTTATTTCGCTTCT
GGGCAACCCCACTTCGTTATTTGCGTACATTCTTAACACATTTATTTCAC
GATGATCCGCGAATTCGAGGTGGATATGTAGAAGTTTGAGGGAGAAGGTA
TGGGGCGAAGATCGATCGTGGAATACCGATTCGTATAGTGCTTTTTCACT
GCTTAAGAATGGTTGCCCAGAAGAGAAAATCGAGGGAAGATAAAAACCTT
CGCTGTGCCACCCCATGCATGCGGAGTGATTTACCTTTATATACAACCTT
GCGTAGAGATCAAATAAAATACAATAAAATAAAAGATGTAGGATAACGCT
TGGCATGTTTCGTGCCTGTTCGCCCCGTGCCGGCGGGGGATCAAGTCTGT
TCAGACTCGAGAAAAATTCTGCATTGCGTTATGGGGAAACATGTACTCTC
CAATCTTGATCAGAACTTTCCCTTCAGGCATGACTACCTCACGAGCGCGC
TGCTGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:1024625..1027581+

>mRNA_A-nodosum_M_contig11.76.1 ID=mRNA_A-nodosum_M_contig11.76.1|Name=mRNA_A-nodosum_M_contig11.76.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=501bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1024625..1027581+ (Ascophyllum nodosum dioecious)
ATGGCTGCCCCTCCCAAGCCTCTTGTCGTTGACATCCACACCTCGGTCAA
GGATGGGGACATGACGAAGGTGCTCGAGTTCTTGGAAGAAGGCGGGGACG
TCAACGTACGGTGCAGGTACCGCACGATCCCGCTGCACCGGGCTGCGGCG
TACAATCACGAGGACATCGCCAAGATTCTGCTCGAGAAAGGCGCCGACTT
GGAGGCACGAGATGGGGTCGGGCACACTCCCCTTTTCTGGGCGTGTCGAC
GAGGACACACGAGCATGGCCGACCTTCTCCTCTCGAAAGGGGCGCACATC
GACGCACAAGACAAAAAGGAGCGAACCCCTTTACACGAAGCGGCGCGGCA
TGGGCATAAAGAGACCTGCGCGCTTCTCCTCAAGAGAGGAGCCAAGCGAG
ATATTATGGATGTCGATGCGAACGAACCAGGGGAGGACTTCGAATCGGGC
GTGCCAGAGAACCTTCGTGATGAGATTCGGTCGATGATCGAACAAACGTG
A
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