mRNA_A-nodosum_M_contig11.35.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.35.1
Unique NamemRNA_A-nodosum_M_contig11.35.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: A0A6H5JW62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW62_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 2.350e-133
Identity = 366/956 (38.28%), Postives = 457/956 (47.80%), Query Frame = 3 
Query:  270 ATTPQGSRFVECPLCSKSVHSSLAQHHVDRCPGVRAEARERPLLSS--KTENARNQGGSSGSGSNGGIDRASGEHSAPLGDSTLELE--VCKVVVSQPERIKDSGSPQANEGACGVRQVKGNKNNNKKRGEASSTRGNGNENNKSYQSGSIETSFEHASEKNDGAPTTTSCTQSI---TTTDNPACRAPMKKNAFSKMMAASALADFREEMYLWAHDDGALSWGWGPAGDPRPAPPERCSCGDLSGRKRQQQQQHRRWSCQVATKGPDGYKAGTCELWTNL-PSAPVARGQGGIASAGGMIASGPLTAACGDGNAGVRAVRPGQSLSRLSVPVLKSMLQKNIRRRNAEAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASCPVRDTVDSCLVLDPIAGRPVSLTADGCPAPHPRDLISPNKGRNRWEPDEPGERSAAEQS--DAVKMPSP-----------GGRVCDDDVPAGGFQRRQCCDAEAGGNSASVGDAVGGLIACCRRALLFRMSYGGMACDQALLKGSCLAWGERCGHL-------------------------------------------------TTVSKGTTPIDQR----SSAPPTPP---------SRPASCGA-----------VPPFGYIHDSVLSALARDPWMEFVLSAHDGSGMPAALRSALLAHVAGGGEEATFSRGDSEKMKRGEAPSTEERTATTGNQTLPKEKSGIDTVGTGPRCVKPSGIGPVLREADAALSGLDFHCSKVLDDVLRSSAAVERVRAAIRGVATGRDPGAGIRLASKGSSLSVEAPREPVMQAAKRAMWACSSGVNGRELRLMFTPGSAYGGTVSETFVAALSPCL--------------------------AGDEASETDVRSWEAISMDVSRLARKYVRGRLAPG 2777
            A +P GSRFV+CPLC KSVHSSLAQ HV+RCPG    + E P+ S+  K   A     +   G +     A G+  A +  S +  E  + + V S P     +G   A  G+ G        ++ +++  A+ T    N N            F     ++ G   TTSC+      + TD        + +AF+ +MAASAL +FREEMYL AH DG LSWGWGPAG+P P  P                    RW CQVATKGPDG KAGTC++WTNL P+  V       A  GG   +  +T A GD NAG++A RP QSLSRL V V+KSMLQKNIRR  AEAA RCALELALKSWSDAIRRVLVI VEDSLLHPAAPLL+WLM ATSKGYRPP  L++AFL VVHETA+CPVRD+ DS            +  ++G    H R+         R + D   ++   E+   DA + P P           G  V                                  +A  RRALL R+SYGGMA DQALLKG CLAWGERCGH                                                  T  +KG+   D +       PP+PP         +RP    A           + PFGY H+SV SAL  + W  F+++AH G+GMP ALR+ LLAHV G G      R  + + K     S                +    +  T P C     +GP++READA LSG+DFHCS VLD++LRS+A   RV  AI   +  R P    R    G + S E     V QAAK+AMWACSSG+N R LR+ F   +   G  +E        CL                          AG  +S  D R W A+S DVS    K+V+GRL+ G
Sbjct:   46 AASPSGSRFVKCPLCGKSVHSSLAQTHVERCPG----SGEEPISSAAKKVPPAAASAPAHTPGVSSPQQEAGGKADACVATSLVRRERSLAERVSSIPVVEAAAGPDDAKCGSIG--------DSGREKAGAAGTPPPSNSNGDD---------FTGDGRRSRGRRKTTSCSSGEAGDSATDQ-------EDDAFATLMAASALTNFREEMYLLAHQDGTLSWGWGPAGNPLPPIPAHFDTASS------------RWRCQVATKGPDGRKAGTCDIWTNLAPAESVTDPVLPAAGRGGDRVTRGVTPAGGDDNAGLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVITVEDSLLHPAAPLLTWLMVATSKGYRPPPRLLEAFLCVVHETAACPVRDSTDSSCRXXXXXXX-XTCVSNG----HHREAGFSISSAARTDQDPERQQLPVEKKCFDADEFPVPHPKSLLVPASQGAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVANIRRALLMRVSYGGMAFDQALLKGVCLAWGERCGHCYYCCCRGAVHPSFTLTVAAAATAASVDGSTGGSNPSCLEGEKASTSGEGTIFAKGSGSTDNKPVTPQRQPPSPPHVDHKTFSFARPRDQDAGKANREDLVDILQPFGYAHESVRSALEGNGWTAFLVAAHAGTGMPPALRTHLLAHVVGVGSGRAGERTGNMRQK-----SXXXXXXXXXXXXXXXXRLTAASTSTHPIC-----LGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAI---SESRGP----RSNGVGDAESSELDLVGVRQAAKQAMWACSSGINTRRLRVAFLWEAGEEGEETEVAEGNCGCCLSSPGYLEETEGIVGVGEDGVSLPVGIAGGSSSGMDARVWAAMSSDVSGWTTKFVQGRLSRG 939
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: D7G4U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U0_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 8.570e-74
Identity = 210/565 (37.17%), Postives = 260/565 (46.02%), Query Frame = 3 
Query: 1161 LTAACGDGNAGVRAVRPGQSLSRLSVPVLKSMLQKNIRRRNAEAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASCPVRDTVDSCLVLDPIAGRPVSLTADGCPAPHPRDLISPNKGRNRWEPDEPGERSAAEQSDAVKMPSPGGRVCDDDVPAGGFQRRQCCDAEAGGNSASVGDAVGGLIACCRRALLFRMSYGGMACDQALLKGSCLAWGERCGHLTTVSKGTTPIDQRSSAPPTPPSRPASCGAVPPFGYIHDSVLSALARDPWMEFVLSAHDGSGMPAALRSALLAHVAGGGEEATFSRGDSEKMKRGEAPSTEERTATTGNQTLPKEKSGIDTVGTGPRCVKPSGIGPVLREADAALSGLDFHCSKVLDDVLRSSAAVERVRAAIRGVATGRDPGAGIRLASKGSSLSVEAPREPVMQAAKRAMWACSSGVNGRELRLMFTPGSAYGGTVSETFVAALSPCLA--------------------------GDEASETDVRSWEAISMDVSRLARKYVRGRLAPG 2777
            +T   GD NAG++A RP QSLSRL V V+KSMLQKNIRR  AEAA RCALELALKSWSDAIRRVLVI+VEDSLLHPAAPLL+WLM ATSKGYRPP+ L++AFL VVHETA+CPV    +S      + G   S + +G        +++   G     P           +   + PSP                                                                       R  H T       P DQ +       +R      + PFGY H+SVLSAL  + W  F+++AH G+GMP ALR+ +LAHV G G      R    K K                  +    S             P+ +GP++READA LSG+DFHCS VLD++LRS+A   RV  AI   +  R P    R    G S S E     V QAAK+AMWACSSG+N R LR+ F   +      +E        CL+                          G  +S  D R W A+S DVS    K+VRGRL+ G
Sbjct:   22 VTPTGGDDNAGLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPLRLLEAFLCVVHETAACPVTGGSNSSF----LEGEKASTSGEGT-------VLAKGSGSTDKTP----------VTSQRQPPSP----------------------------------------------------------------------PRFDHKTFPL--ARPRDQDAGYA----NREDLVDILQPFGYAHESVLSALEGNGWTAFLVAAHAGTGMPPALRTHVLAHVVGVGSGRAGERAGDMKQKSXXXXXXXXXXXXXXXXXMSTAAS---------TATPPNRLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAI---SESRGP----RSNDVGDSASSELELVGVRQAAKQAMWACSSGINTRRLRVAFLREAGEESEETEVAEGNGGCCLSSPGYLEETERVVGVGEDGVSLPVGNGGGSSSGIDARVWAAMSSDVSGWTTKFVRGRLSRG 473
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: A0A7S0CK82_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK82_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.220e-17
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 3 
Query: 1224 SRLSVPVLKSMLQKNIRRRNAEAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASCPVRDTV 1514
            SRLS+PVLKS+LQK+IRRR    + R A+EL  KS+ D IRR+ +I++EDS+LHP  P L W M + SKG+ P   +V+  LR+V++ ASCP  D +
Sbjct:   67 SRLSIPVLKSILQKSIRRRRPMPSVRIAMELIDKSYGDFIRRLPIIILEDSILHPQFPFLVWNMVSYSKGFVPAPNIVECILRIVYDVASCPWHDKI 163
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: A0A6U3V913_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3V913_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.180e-17
Identity = 80/233 (34.33%), Postives = 106/233 (45.49%), Query Frame = 3 
Query: 1215 QSLSRLSVPVLKSMLQKNIRRRNAEAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASCPVRDTVDSCLVLDPIAGRPVSLTADGCPAPHPRDLISPNKGRNRWEPDEPGERSAAEQSDAVKMPSPGGRVCDDDVPAGGFQRRQCCDAEAGGNSASVGDAVGGLIACCRRALLFRMSYGGMACDQALLKGSCLAWGER 1913
            Q  SRLS+  LKS LQK+IRRR    A R A+ELA KSW+D IRR+ +I++EDS LHP   LL+WLM A SKGY P   L+   L++V E ASCP +D ++               + D C     +D I    G +     +P   S +  S  +                  F  +Q  +             V  L     RA+L R  YGGM CD  +L      W +R
Sbjct:  269 QRHSRLSISHLKSCLQKSIRRRAPLPAVRVAMELADKSWTDLIRRLPIIILEDSTLHPDFSLLAWLMIADSKGYVPSKELIVRVLQIVFEMASCPWQDGIEE-------------HSNDDCSGSQMKDRIGSGSGDDS----KPTSFSLSSSSSTL------------------FPTQQQKEQST----------VNALEITTIRAMLLRAQYGGMKCDVDMLHSFSKIWLQR 456
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: A0A835ZBZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.730e-17
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 3 
Query: 1269 IRRRNAEAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASC 1496
            +RR   E A RCA ELA+KS++D +RR+ +I +EDS+LHPA PLL+WLMAA  KGY PP   V A L VVHE + C
Sbjct:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 76
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: A0A7S1BMU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMU8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.930e-16
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 3 
Query: 1218 SLSRLSVPVLKSMLQKNIRRRNAEAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSK 1430
            S SRLSVPVLKSMLQK +RRR A  A R A+ELA KSW D IRR+ VI+VEDS+LHP  PL+ WLM A SK
Sbjct:   30 SPSRLSVPVLKSMLQKCVRRRRALPAVRIAMELAQKSWRDFIRRLPVIMVEDSMLHPDLPLVVWLMMAESK 100
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: A0A448ZPZ8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPZ8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.960e-16
Identity = 79/244 (32.38%), Postives = 109/244 (44.67%), Query Frame = 3 
Query: 1224 SRLSVPVLKSMLQKNIRRRNAEAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASCPVRDTVDSCLVLDPIAGRPVSLTADGCPAPHPRDLISPNKGRNRWEPDEPGERSAAEQSDAVKMPSPGGRVCDDDVPAGGFQRRQCCDAEAGGNSASVGDAVGGLIACCRRALLFRMSYGGMACDQALLKGSCLAWGERCGHLTTVSKGTTPI 1955
            SRLSVPVLKS+LQK+IRRR    + R A ELA KS  D +RR+ +I++EDS LHP+ P L WLM A SK Y  P+ L+   L +V E ASC  +D++                        H +  I+ N        D P E + A   +   +                F        ++G       D +         ++L R  YGGMACD  +LKG    W +R   + T+ + T  I
Sbjct:  101 SRLSVPVLKSILQKSIRRRKPLPSVRVASELADKSLGDLLRRLPIIILEDSTLHPSFPFLVWLMMADSKNYHLPLFLLKRVLGIVFEMASCRWQDSLKV----------------------HEQQKINHNDESTT---DIPSELTLACLHNYKTVSK--------------FSDDNALSTQSGTEFCLSNDEL------IVWSILMRGQYGGMACDIKMLKGYAALWHQRFFSIQTIPEKTKKI 299
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: B8C1K7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1K7_THAPS)

HSP 1 Score: 93.2 bits (230), Expect = 1.340e-15
Identity = 53/95 (55.79%), Postives = 62/95 (65.26%), Query Frame = 3 
Query: 1224 SRLSVPVLKSMLQKNIRRRNAEAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASCPVRD 1508
            SRLSV  LKS LQK+IRRR    A R ALEL  KSW   IRR+ +I +EDS LHP   LL WLM A SK Y PP  L+   +++V E ASCP +D
Sbjct:  326 SRLSVAQLKSCLQKSIRRRAPLPAVRVALELVDKSWEALIRRLPIICLEDSFLHPDFALLVWLMVADSKNYAPPTSLIVRVMQIVFEMASCPRQD 420
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: A0A7S2V1T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.510e-15
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 3 
Query: 1287 EAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASCPVRD 1508
            E+A R ALEL  KSW+D IRR+++I++ED +LHPA PLL WL+ A S+G+ P    V A L++VHE   CP +D
Sbjct:   11 ESAVRVALELMAKSWTDFIRRIVIIMIEDCMLHPATPLLVWLLLADSRGWIPTSAQVQACLKIVHELTLCPWKD 84
[Close]
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Match: A0A7S4AVJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AVJ5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.530e-15
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 3 
Query: 1224 SRLSVPVLKSMLQKNIRRRNAEAASRCALELALKSWSDAIRRVLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASCPVRDTV 1514
            SRLSVPVLKS+LQK+IRRR    + R A ELA KS  D +RR+ +I++EDS LHP+ P L WLM A SK ++ P+ L+   L +V E ASC  +D++
Sbjct:  315 SRLSVPVLKSILQKSIRRRKPLPSVRVASELADKSLGDLLRRLPIIILEDSTLHPSFPFLVWLMMAISKDFQLPLSLLKRVLGIVFEMASCRWQDSL 411
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW62_9PHAE2.350e-13338.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4U0_ECTSI8.570e-7437.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0CK82_9STRA2.220e-1751.55Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6U3V913_9STRA4.180e-1734.33Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A835ZBZ5_9STRA5.730e-1757.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1BMU8_9STRA1.930e-1669.01Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A448ZPZ8_9STRA2.960e-1632.38Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B8C1K7_THAPS1.340e-1555.79Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2V1T4_9STRA4.510e-1552.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4AVJ5_9STRA4.530e-1552.58Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:438930..445348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4U0
Model size4128
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.06e-76
EggNOG OGs2DBB4@1|root,2S5HM@2759|Eukaryota
Cds size2649
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866486.519892-UTR-A-nodosum_M_contig11:438929..4390781680866486.519892-UTR-A-nodosum_M_contig11:438929..439078Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 438930..439078 +
1680866486.5603046-UTR-A-nodosum_M_contig11:444018..4453481680866486.5603046-UTR-A-nodosum_M_contig11:444018..445348Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 444019..445348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866486.5322065-CDS-A-nodosum_M_contig11:439078..4401191680866486.5322065-CDS-A-nodosum_M_contig11:439078..440119Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 439079..440119 +
1680866486.5430815-CDS-A-nodosum_M_contig11:441766..4419241680866486.5430815-CDS-A-nodosum_M_contig11:441766..441924Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 441767..441924 +
1680866486.5524766-CDS-A-nodosum_M_contig11:442568..4440181680866486.5524766-CDS-A-nodosum_M_contig11:442568..444018Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 442569..444018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.35.1prot_A-nodosum_M_contig11.35.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 439079..444018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.35.1

>prot_A-nodosum_M_contig11.35.1 ID=prot_A-nodosum_M_contig11.35.1|Name=mRNA_A-nodosum_M_contig11.35.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=883bp
MQQDAFTRLFSSSSSERGKHTHPRPRPHRKRPRSATALAPATTPQGSRFV
ECPLCSKSVHSSLAQHHVDRCPGVRAEARERPLLSSKTENARNQGGSSGS
GSNGGIDRASGEHSAPLGDSTLELEVCKVVVSQPERIKDSGSPQANEGAC
GVRQVKGNKNNNKKRGEASSTRGNGNENNKSYQSGSIETSFEHASEKNDG
APTTTSCTQSITTTDNPACRAPMKKNAFSKMMAASALADFREEMYLWAHD
DGALSWGWGPAGDPRPAPPERCSCGDLSGRKRQQQQQHRRWSCQVATKGP
DGYKAGTCELWTNLPSAPVARGQGGIASAGGMIASGPLTAACGDGNAGVR
AVRPGQSLSRLSVPVLKSMLQKNIRRRNAEAASRCALELALKSWSDAIRR
VLVIVVEDSLLHPAAPLLSWLMAATSKGYRPPICLVDAFLRVVHETASCP
VRDTVDSCLVLDPIAGRPVSLTADGCPAPHPRDLISPNKGRNRWEPDEPG
ERSAAEQSDAVKMPSPGGRVCDDDVPAGGFQRRQCCDAEAGGNSASVGDA
VGGLIACCRRALLFRMSYGGMACDQALLKGSCLAWGERCGHLTTVSKGTT
PIDQRSSAPPTPPSRPASCGAVPPFGYIHDSVLSALARDPWMEFVLSAHD
GSGMPAALRSALLAHVAGGGEEATFSRGDSEKMKRGEAPSTEERTATTGN
QTLPKEKSGIDTVGTGPRCVKPSGIGPVLREADAALSGLDFHCSKVLDDV
LRSSAAVERVRAAIRGVATGRDPGAGIRLASKGSSLSVEAPREPVMQAAK
RAMWACSSGVNGRELRLMFTPGSAYGGTVSETFVAALSPCLAGDEASETD
VRSWEAISMDVSRLARKYVRGRLAPGATPSPG*
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mRNA from alignment at A-nodosum_M_contig11:438930..445348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.35.1 ID=mRNA_A-nodosum_M_contig11.35.1|Name=mRNA_A-nodosum_M_contig11.35.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6419bp|location=Sequence derived from alignment at A-nodosum_M_contig11:438930..445348+ (Ascophyllum nodosum dioecious)
CGGTAGCAAATTTACACCGCGATCACCTCGGGCGAGCTGACAAGGATGCC
CGATGGTGGCGCCGTTCGGATATACTGTAGTCTGTTATTTCATCTGAAAA
CAGTGGACCTCTCTTGAACCAAAGTAGTCTACAAGGTTGCGAAGACAGCA
TGCAGCAAGATGCATTTACTCGATTGTTTTCATCTTCGTCCTCCGAGCGC
GGCAAACACACGCATCCCCGTCCGCGTCCCCACCGCAAGCGCCCCAGGTC
GGCGACGGCACTGGCTCCGGCGACAACTCCGCAGGGCTCGCGCTTCGTGG
AGTGCCCCCTCTGCTCGAAGTCAGTACATTCTTCTCTGGCGCAACATCAT
GTCGATCGGTGCCCCGGTGTCCGGGCTGAGGCTCGAGAACGACCTTTATT
ATCCTCCAAGACCGAGAATGCTCGAAACCAGGGGGGCAGTTCTGGTTCTG
GCTCCAACGGAGGCATTGATCGAGCTAGTGGAGAGCACTCTGCTCCGCTG
GGGGATAGTACGCTCGAACTGGAGGTGTGCAAGGTGGTGGTATCTCAACC
CGAGAGGATCAAGGACAGTGGTTCGCCTCAGGCCAATGAAGGAGCTTGTG
GAGTGCGTCAAGTCAAGGGAAACAAAAACAACAACAAAAAACGTGGTGAA
GCTAGCTCTACTCGGGGCAACGGCAACGAAAACAACAAATCTTATCAATC
GGGATCGATTGAAACCAGCTTTGAGCATGCATCCGAGAAAAACGACGGCG
CCCCCACCACGACCTCATGCACCCAATCCATCACCACCACAGACAACCCG
GCTTGCCGCGCCCCCATGAAGAAGAACGCCTTTTCGAAGATGATGGCGGC
TTCCGCGCTCGCCGACTTTCGAGAAGAGATGTACTTGTGGGCGCACGATG
ACGGGGCGCTTTCCTGGGGATGGGGTCCTGCGGGTGATCCCCGCCCCGCG
CCCCCCGAGCGATGCTCCTGCGGTGACCTCAGCGGCAGGAAGAGACAGCA
GCAGCAACAGCATCGCCGATGGTCGTGCCAGGTGGCAACCAAAGGCCCCG
ACGGCTACAAGGCCGGCACATGCGAGCTCTGGACGAACCTCCCGTCGGCG
CCCGTAGCGAGGGGGCAGGGTGGGATCGCGTCGGCTGGTGGAATGATCGC
GAGCGGTCCGCTAACAGCTGCCTGCGGAGACGGCAACGCGGTGAGCGCGT
GCATGTCTTTTGGGGTTCTTCTTGAACGTAATGGCAGCAGCTATCCTAGA
TCTTCATCGAGTTCACGTGGTCTAGCCGGCGAACAAGACCTCTATTCAGC
TGACCGTGTCCCTCATTTCTTTTGGCCGTCTCTAGGCAACGCTCGCACTT
CAGCGAAGATTCGACTGCCTCGAGTTACAAAATGTGTACGGTTGAAAAAC
CATTAATAGTGAACCTGCATCGCAACAAAAAAACGAACGGTGGTATTTAT
GAACCGGGGTCAGAGATGGTGTTAGTTGGCGGCTAAAACCATTGGACTAC
TGACTCAATAGTCCAATGGGATGAGTTGATACTTTATTTCAAGTGACCAC
AGGCAGGATGGTCAACGTTGCAGTAGTGGGATAAGTAGCCCGGCGCGTTG
ATTGGCCCCATCGACAAAAAGTGAGAACTGTAAAGCCCTTGTTTGATTGG
ATGATAAGGGCTAGCCGTACCGAGGCCGTGATGCCCTAGGGGTACCAAAA
GGTGTTTTAATAGCCCAGCGAAACTCGAACGACAGCAGGAGGACACCTGG
GTACCTCGCCTCTCCGATCAAATTGAAAAAAGGACGACCTTTCAGCGCAG
ACCACGCCTGGGGCCACCCTTTAAAGCCTGCACAACCCGCACCAGTTAAA
CCCCAGGCCAATTTACCGAATAAATCCGGTACCATCGGCTCGACTGCTGT
CGCCAACGCAGCTAGCCGGCTTGGCTCTCGACACGTCGAATGGAATCTAG
GCGTGTATAAATATGTTTCGTGTGTGCGTTTCGTTGACGCTTTTTCTCCC
TTGAGGCTGTGACGGCGTCCTCGCCCGCAACGGAAGCTGTGGAGAGTCTG
TATGATTTCAGTGGGTGGGTTTTGCCCGCCGTCCTCTCGCGGAGCAATGT
CCAAGAGTAGGCAGACCCTCAAAGTGTGACTTCTCAATACCACGGATGTC
GTGTGGCAGGAAAAGAGATGCGGTCACTGGCTAGTGCTGAACGCACGTCC
TATTGCCATCGCGACCTGCTGCAAAGACGAGGCATTTTGAAAGAAATCAC
CGAGTAGAGCAGTACCACGATCGAAGGCTGCCGCCACGCGTCGAATGCAA
ACACTGCCGCCGCTGTCGAGCGAATACATCTATGTTTATAATGGTCGTTC
GGGATGGTAAGGCCAACAGTCGTCGACCTCGGGGTGTCGTGTCTGGCACT
GCCGTGACGGGCGTGCTTGCGAATGTTGTTTGACACGTGCATGCGATGCA
GCAGACTGGAAAGAAAGGCTGAGCCAACGCCACCCTGCGAGCGATGGCAT
CAGTTCGGTCATTTCATAGCTTTGCCCTCATAAAACCCCTAGGTATCCAA
GTCCTATGAGCGACGCCCGAAGTTGACTTGATCTTGTTCGTTTGGAAAAA
GGAGCTAAGACACGCTCCACCTGGCGGTACGAAAATCGACTAACCTCTCG
GTACGAGCTCAAGTTAGGCAACGAGGCCTGCAGGTCGAATGTGCTCGCCC
CCTGTTGAGACCTTCTCGCGCGCCTTCCTTCAGAGCATCTGACCTGCGTC
TCTGACGATGGGGGATCGTTTCCCTTCCCCTCGGTTCCCGTTCGATGATG
CCTGATACTGTACAACGCGTGCTGTCGCTGACGGCAGGGCGTAAGGGCGG
TGCGGCCTGGCCAGAGCCTATCCCGACTGTCCGTGCCAGTGCTGAAGTCC
ATGTTGCAGAAGAACATTCGGCGCAGAAACGCCGAGGCAGCTTCCCGATG
CGCACTGGAGCTGGCGTTGAAGAGCTGGAGCGATGCCATTCGCCGGTAAA
AGGGCAAAGTGGCGTTTCGGGCGCGTACGATCGAGTAGATTATGGCGTGA
TCAAGGGGAGGATATGTACCACAGCTGCATGCCGTATACGGTCAAAACTA
CTGTATATTGATTCATATTGATGCAGTGCCGCGCTTGCTACGTTGTGCGG
CCCCGTGCGTTGAATGTATTGTATCAGGAATAAATGTCGCATAGGTGTCC
ATGTTTGTTTCGTCACCTACGTTCCTTAGTGGCTATTAACAAAGAGTTTG
CAAGGACATGGACCTGAAAGGGAAATTTGGTGCTAGAATTCAAGGAATAG
CACATGGACCTCGATGACGACTATTGTGAAAGTGGGTATGCCATCTCTGG
TGTGCGGTACACAGTTGTCGCCGAAGAAATTGCAAGTGCAACGGCCATTT
ATTTGTACATAGCACCTGCGGCTTTATTACCAATCGAACATGCTTTCCCC
CCGGCGCGAGGGCTCGCCAGGCCGGGGACCATTAAAAGAGAAATAAGGAG
AGGTGTAAACTGTTCGACATTCTCCTTGGGCATGAGCGGGGACGGAATCG
TGCGTCACTCGAGTTCCCGCTAACCGCCGCCGCCTTCCCTTTGTACCGAT
GACGACCCGCGGTGGACTTGAACTCTCGAATCGACGCAGGGTCCTGGTCA
TAGTCGTGGAGGACTCTCTACTGCATCCTGCCGCCCCTCTTCTGTCCTGG
CTGATGGCGGCCACCTCAAAGGGATACCGCCCGCCGATATGCCTCGTGGA
CGCCTTCTTGAGAGTGGTTCACGAAACGGCGTCATGTCCCGTACGGGACA
CGGTCGACTCGTGCCTCGTCCTCGACCCGATCGCGGGTCGCCCGGTCAGC
CTCACCGCTGATGGATGTCCAGCTCCGCACCCCAGAGATTTGATATCTCC
CAACAAAGGCCGAAATCGGTGGGAACCAGATGAGCCGGGCGAGAGATCAG
CAGCAGAGCAGTCAGACGCGGTGAAGATGCCATCGCCTGGTGGGCGTGTT
TGCGATGATGACGTCCCAGCCGGAGGCTTCCAGAGGAGGCAGTGCTGTGA
TGCCGAGGCGGGAGGCAACTCGGCGAGCGTGGGCGACGCTGTGGGAGGCT
TGATCGCGTGCTGCCGCAGAGCCTTGCTGTTCCGTATGTCGTACGGGGGT
ATGGCCTGCGACCAGGCCCTGCTCAAGGGGTCGTGTCTAGCGTGGGGGGA
GCGCTGCGGTCACCTCACAACGGTCTCAAAGGGAACCACTCCGATAGACC
AGCGCTCGTCGGCACCCCCGACCCCACCCTCTCGACCTGCGAGTTGCGGT
GCTGTCCCGCCTTTCGGGTACATTCACGACAGCGTTCTATCGGCCCTCGC
GAGGGATCCTTGGATGGAGTTTGTACTCTCAGCGCATGATGGGAGCGGGA
TGCCCGCGGCGCTGAGATCCGCGCTCCTGGCGCACGTCGCCGGCGGCGGC
GAAGAGGCCACGTTTTCCAGGGGTGACTCGGAGAAAATGAAGAGGGGAGA
AGCTCCGTCGACAGAGGAGAGGACAGCAACCACGGGGAATCAAACACTCC
CCAAGGAGAAGTCGGGTATCGACACAGTCGGAACGGGCCCGCGGTGCGTG
AAACCGAGCGGGATCGGGCCCGTTCTTCGAGAGGCCGACGCCGCCCTTAG
CGGCTTGGACTTCCACTGCAGCAAGGTGCTTGACGACGTCCTTCGGTCTT
CCGCGGCAGTCGAGCGTGTCAGAGCAGCGATCCGAGGAGTGGCTACTGGG
AGAGATCCAGGAGCAGGCATTCGTCTTGCGTCGAAAGGTTCTAGTCTAAG
CGTCGAAGCGCCCCGGGAGCCGGTGATGCAAGCCGCCAAGCGAGCCATGT
GGGCGTGTTCAAGCGGCGTGAACGGACGCGAGCTTCGCTTGATGTTTACG
CCGGGTTCTGCCTACGGAGGTACCGTCTCGGAGACCTTTGTTGCCGCGCT
GTCCCCCTGTTTGGCGGGCGACGAGGCCTCGGAGACGGACGTGAGGTCGT
GGGAGGCGATTTCGATGGACGTGTCTCGTTTGGCGAGGAAGTACGTGCGG
GGCCGGTTGGCGCCGGGCGCAACACCAAGTCCGGGTTGAAATGCATCGGT
GGGGAGAGTAACGTGCACTGTCTCAGCACGTCCCATCGTACGCGGTTGAG
CGCGGGGGGGGGGGCACACGAGGAACGCGTCTCTATTTCGTTTTTTCCGC
GATTGACTTGTTGGCAGGGCAGGAGGTTCTTTGATCTGACCACGATCGAT
ATCTTTGTAGAAGTATAAGTGTGACGACTTTCTATCGTCTAGGGCAGGAA
CGGGGGGTGAGTCCGGGGCGTGGGGGCGAAAGAGAGAATATACGGTGGTC
GTTGCGAGCGGCGTCCCTTGGAAAGTGTTTTACCACGCCTCCGGAACTAC
GGTACAGCGTTTCGTGGTTCGTATTAAAGCTGTGGATCCTGTGCCAAGAT
GTCTTTGTAACGTTTTCTGTAAGGTACGATACTGTACTGCACTCTGCGGT
AATGTTGCTAAATTCATGAAACAGTTTGAACCGTCGAAACTCGTCTGTAG
ACATCAGAAAGTGGCACGTTTGCTGTACGTGAGGAGTTCCAATGGCAAGT
GGCCTTTTTTGGACGTTTTTTCGAAACCGCAGATAACGCATCGTACGAGA
TTTTTTAACTGTGGCGAGGCGTTCACCCGCGTTCTCGGAGTGTGGAGGGA
AGAGGTCTCTCAAAATTTTGCTATTGATCGGGTGGAAAAGCAAAAATGTT
GCTGGCTTTGACCTCATCAATGCAAAGATGGAAAGGAGCATGACCACTCA
CTCGTGAAATTAACGTGTTGTGATGATTGGTCTGGAATTCCCCCCGCATT
GGGTAATGACCCTAGGGGTAGAATCTAGTTTTGTAGAATCTCCGTTCTGG
CATTCTCTTGTAAGAGGAGAGTTCACTGTTGTTGGAGCCACATCGACTCA
GAACTCAACTCTCCCAAGGATGTAACGAAGGAAGGTGAAGGAGAGAAATC
ATGGGACCCCCAGGACAAAGCATCCCTCCAAGGTGTCGAGCAACTGCTAC
GCGTGATATCGTTGTGTGTATTCCTGCTCCAGTCGTCCTTAAAAACGTTC
GACGAGAGAGTTACCCTCGCCATTTCAATATCAAAAGTCGAACCGGCATG
CCAGACATTTTTTCTGTTCAAGTTTAGACCACTGAGAGATAATTTTTTTC
GTGATATGATGCGCGTTGAGTGCCAACGTACAGCTAGCTATGTTCAAGTG
GAAACCCCACGGAGGTATTTGGTTCACTAGATTTATGCGAAGGGCAGAGG
TCCATGCAAGCTCCGTCGCACTTAGCTCAATATGCGAATGCAAGAAGAAA
AAATATATATATATAAATCCAGAATCACGCCCCGGAAGATCTAGGGCGCT
GCGGAAAAATGAAGCTGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:438930..445348+

>mRNA_A-nodosum_M_contig11.35.1 ID=mRNA_A-nodosum_M_contig11.35.1|Name=mRNA_A-nodosum_M_contig11.35.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2649bp|location=Sequence derived from alignment at A-nodosum_M_contig11:438930..445348+ (Ascophyllum nodosum dioecious)
ATGCAGCAAGATGCATTTACTCGATTGTTTTCATCTTCGTCCTCCGAGCG
CGGCAAACACACGCATCCCCGTCCGCGTCCCCACCGCAAGCGCCCCAGGT
CGGCGACGGCACTGGCTCCGGCGACAACTCCGCAGGGCTCGCGCTTCGTG
GAGTGCCCCCTCTGCTCGAAGTCAGTACATTCTTCTCTGGCGCAACATCA
TGTCGATCGGTGCCCCGGTGTCCGGGCTGAGGCTCGAGAACGACCTTTAT
TATCCTCCAAGACCGAGAATGCTCGAAACCAGGGGGGCAGTTCTGGTTCT
GGCTCCAACGGAGGCATTGATCGAGCTAGTGGAGAGCACTCTGCTCCGCT
GGGGGATAGTACGCTCGAACTGGAGGTGTGCAAGGTGGTGGTATCTCAAC
CCGAGAGGATCAAGGACAGTGGTTCGCCTCAGGCCAATGAAGGAGCTTGT
GGAGTGCGTCAAGTCAAGGGAAACAAAAACAACAACAAAAAACGTGGTGA
AGCTAGCTCTACTCGGGGCAACGGCAACGAAAACAACAAATCTTATCAAT
CGGGATCGATTGAAACCAGCTTTGAGCATGCATCCGAGAAAAACGACGGC
GCCCCCACCACGACCTCATGCACCCAATCCATCACCACCACAGACAACCC
GGCTTGCCGCGCCCCCATGAAGAAGAACGCCTTTTCGAAGATGATGGCGG
CTTCCGCGCTCGCCGACTTTCGAGAAGAGATGTACTTGTGGGCGCACGAT
GACGGGGCGCTTTCCTGGGGATGGGGTCCTGCGGGTGATCCCCGCCCCGC
GCCCCCCGAGCGATGCTCCTGCGGTGACCTCAGCGGCAGGAAGAGACAGC
AGCAGCAACAGCATCGCCGATGGTCGTGCCAGGTGGCAACCAAAGGCCCC
GACGGCTACAAGGCCGGCACATGCGAGCTCTGGACGAACCTCCCGTCGGC
GCCCGTAGCGAGGGGGCAGGGTGGGATCGCGTCGGCTGGTGGAATGATCG
CGAGCGGTCCGCTAACAGCTGCCTGCGGAGACGGCAACGCGGGCGTAAGG
GCGGTGCGGCCTGGCCAGAGCCTATCCCGACTGTCCGTGCCAGTGCTGAA
GTCCATGTTGCAGAAGAACATTCGGCGCAGAAACGCCGAGGCAGCTTCCC
GATGCGCACTGGAGCTGGCGTTGAAGAGCTGGAGCGATGCCATTCGCCGG
GTCCTGGTCATAGTCGTGGAGGACTCTCTACTGCATCCTGCCGCCCCTCT
TCTGTCCTGGCTGATGGCGGCCACCTCAAAGGGATACCGCCCGCCGATAT
GCCTCGTGGACGCCTTCTTGAGAGTGGTTCACGAAACGGCGTCATGTCCC
GTACGGGACACGGTCGACTCGTGCCTCGTCCTCGACCCGATCGCGGGTCG
CCCGGTCAGCCTCACCGCTGATGGATGTCCAGCTCCGCACCCCAGAGATT
TGATATCTCCCAACAAAGGCCGAAATCGGTGGGAACCAGATGAGCCGGGC
GAGAGATCAGCAGCAGAGCAGTCAGACGCGGTGAAGATGCCATCGCCTGG
TGGGCGTGTTTGCGATGATGACGTCCCAGCCGGAGGCTTCCAGAGGAGGC
AGTGCTGTGATGCCGAGGCGGGAGGCAACTCGGCGAGCGTGGGCGACGCT
GTGGGAGGCTTGATCGCGTGCTGCCGCAGAGCCTTGCTGTTCCGTATGTC
GTACGGGGGTATGGCCTGCGACCAGGCCCTGCTCAAGGGGTCGTGTCTAG
CGTGGGGGGAGCGCTGCGGTCACCTCACAACGGTCTCAAAGGGAACCACT
CCGATAGACCAGCGCTCGTCGGCACCCCCGACCCCACCCTCTCGACCTGC
GAGTTGCGGTGCTGTCCCGCCTTTCGGGTACATTCACGACAGCGTTCTAT
CGGCCCTCGCGAGGGATCCTTGGATGGAGTTTGTACTCTCAGCGCATGAT
GGGAGCGGGATGCCCGCGGCGCTGAGATCCGCGCTCCTGGCGCACGTCGC
CGGCGGCGGCGAAGAGGCCACGTTTTCCAGGGGTGACTCGGAGAAAATGA
AGAGGGGAGAAGCTCCGTCGACAGAGGAGAGGACAGCAACCACGGGGAAT
CAAACACTCCCCAAGGAGAAGTCGGGTATCGACACAGTCGGAACGGGCCC
GCGGTGCGTGAAACCGAGCGGGATCGGGCCCGTTCTTCGAGAGGCCGACG
CCGCCCTTAGCGGCTTGGACTTCCACTGCAGCAAGGTGCTTGACGACGTC
CTTCGGTCTTCCGCGGCAGTCGAGCGTGTCAGAGCAGCGATCCGAGGAGT
GGCTACTGGGAGAGATCCAGGAGCAGGCATTCGTCTTGCGTCGAAAGGTT
CTAGTCTAAGCGTCGAAGCGCCCCGGGAGCCGGTGATGCAAGCCGCCAAG
CGAGCCATGTGGGCGTGTTCAAGCGGCGTGAACGGACGCGAGCTTCGCTT
GATGTTTACGCCGGGTTCTGCCTACGGAGGTACCGTCTCGGAGACCTTTG
TTGCCGCGCTGTCCCCCTGTTTGGCGGGCGACGAGGCCTCGGAGACGGAC
GTGAGGTCGTGGGAGGCGATTTCGATGGACGTGTCTCGTTTGGCGAGGAA
GTACGTGCGGGGCCGGTTGGCGCCGGGCGCAACACCAAGTCCGGGTTGA
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