mRNA_A-nodosum_M_contig11.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.3.1
Unique NamemRNA_A-nodosum_M_contig11.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:110845..112268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size871
Hectar predicted targeting categoryother localisation
Exons2
Cds size636
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866484.6301632-CDS-A-nodosum_M_contig11:110844..1111131680866484.6301632-CDS-A-nodosum_M_contig11:110844..111113Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 110845..111113 -
1680866484.6398277-CDS-A-nodosum_M_contig11:111666..1120331680866484.6398277-CDS-A-nodosum_M_contig11:111666..112033Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 111667..112033 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866484.6487684-UTR-A-nodosum_M_contig11:112033..1122681680866484.6487684-UTR-A-nodosum_M_contig11:112033..112268Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 112034..112268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.3.1prot_A-nodosum_M_contig11.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 110845..112033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.3.1

>prot_A-nodosum_M_contig11.3.1 ID=prot_A-nodosum_M_contig11.3.1|Name=mRNA_A-nodosum_M_contig11.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=212bp
MKSYLSHTSAQIERMMGMVQQLLQAKSVDGGQQEEGSGGSDKGDANDDSG
GAGRTPREEGTAGTRVGATTATAAKRRVSSHSSRASDESRPTDDTGRRPE
VPVGVDPMINMQGGEARYSFLAVWPYQGETLQAMKNRNRAEIIRMVGTRY
STPPQKKGSQRSSQPPEQAFFSSERGGRSGTRRGRGRGGRGIQGRGRSGS
SSKGRGSSCGGG
back to top

mRNA from alignment at A-nodosum_M_contig11:110845..112268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.3.1 ID=mRNA_A-nodosum_M_contig11.3.1|Name=mRNA_A-nodosum_M_contig11.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1424bp|location=Sequence derived from alignment at A-nodosum_M_contig11:110845..112268- (Ascophyllum nodosum dioecious)
AAACGCATTTCCTCTCATTTCTTCTTCTTTTTCTCTCTCTTCCCTCTCTC
TGGGTCCTTTAATAAAAGTGTTAAAATAAGATTTTCGTCGCTCATCTGCG
TGAGGCAGTGGAACCCTTGAACGCCGAAGGCTGTCAACACACTATTATAG
TGTTCTCCAAGAAGGAGCTTCCGTTCAAGATGAGTGATACTAATGGACCT
CATAGAGTTGAGGTGCTGAATCAAATGTGGGAGAGATGAAATCATATCTC
TCCCACACAAGTGCACAGATCGAGCGGATGATGGGCATGGTGCAGCAGCT
ACTCCAGGCCAAGTCAGTTGACGGAGGCCAACAGGAAGAGGGGTCAGGTG
GCTCCGACAAGGGAGACGCAAACGATGACAGCGGCGGCGCCGGAAGGACA
CCGCGCGAAGAAGGGACTGCTGGCACAAGAGTTGGGGCCACTACAGCAAC
TGCTGCAAAGAGAAGAGTATCCAGCCACAGTAGCAGAGCGTCAGATGAAT
CAAGACCTACCGACGACACGGGCCGAAGACCAGAGGTTCCAGTTGGCGTG
GACCCGATGATCAACATGCAGGGCGGCGAAGCTAGATATTCATTTCTCGC
AGGTATAGCCGCACACGGTAGTGATGGAGTTTTGGGTTCCGGGTTTCAGA
GATAGTCCCGTGTCGTTCCGCCTGTACTGAAAGGAGAAAAAGGAGAATTC
CAGAAATTCAAGCATGAGTTACTCTTGAAAGCTAACATGCTGGACATCTC
TGGCCACTTCGTAGGTCAGGAGACCCTCGTGGTACCAGTAGAAGACCCGC
TCAAACAGAAGGCGTTGTTGTTACGGGAAGGTTTTTCCAGTGAGGAAATC
AAAGGGGCGTACCGAGCGTGGAACTTTATAGACGGAGCGCTCCAGAGTGA
AGTGAGTAGATCAATCTTGAAGAGATGCAAGTCGCCGAGAGAAGCTTTTG
ACCACCTTGAGAATTGGTACGACCTAGACAATGAGGTGGCGACTCAAAAG
CTACATGACAAGTTCCATTACTTCACCATCTCTCCAACGGCAACCCCATT
AAGGCACTTTATGCACCAGATGACACCAACAACCAAGTGGCTGAGAAGGG
GATGGAAATCCCTGACACCTTCCTGCACGCGCGTTTTGTTCGCGCGCTGC
CTCAGTATGGCCATATCAAGGCGAGACGCTGCAGGCAATGAAGAACCGCA
ATCGGGCCGAGATCATCCGTATGGTCGGCACGCGGTACTCCACCCCGCCC
CAGAAGAAGGGGTCGCAGCGGTCGTCCCAACCGCCCGAGCAAGCGTTCTT
TTCGAGCGAAAGGGGCGGCCGGAGTGGTACGCGACGAGGTCGTGGCCGCG
GTGGCAGGGGCATCCAGGGCCGTGGTCGCAGCGGGAGCAGCAGTAAGGGT
AGAGGTAGCAGCTGCGGAGGAGGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig11:110845..112268-

>mRNA_A-nodosum_M_contig11.3.1 ID=mRNA_A-nodosum_M_contig11.3.1|Name=mRNA_A-nodosum_M_contig11.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at A-nodosum_M_contig11:110845..112268- (Ascophyllum nodosum dioecious)
ATGAAATCATATCTCTCCCACACAAGTGCACAGATCGAGCGGATGATGGG
CATGGTGCAGCAGCTACTCCAGGCCAAGTCAGTTGACGGAGGCCAACAGG
AAGAGGGGTCAGGTGGCTCCGACAAGGGAGACGCAAACGATGACAGCGGC
GGCGCCGGAAGGACACCGCGCGAAGAAGGGACTGCTGGCACAAGAGTTGG
GGCCACTACAGCAACTGCTGCAAAGAGAAGAGTATCCAGCCACAGTAGCA
GAGCGTCAGATGAATCAAGACCTACCGACGACACGGGCCGAAGACCAGAG
GTTCCAGTTGGCGTGGACCCGATGATCAACATGCAGGGCGGCGAAGCTAG
ATATTCATTTCTCGCAGTATGGCCATATCAAGGCGAGACGCTGCAGGCAA
TGAAGAACCGCAATCGGGCCGAGATCATCCGTATGGTCGGCACGCGGTAC
TCCACCCCGCCCCAGAAGAAGGGGTCGCAGCGGTCGTCCCAACCGCCCGA
GCAAGCGTTCTTTTCGAGCGAAAGGGGCGGCCGGAGTGGTACGCGACGAG
GTCGTGGCCGCGGTGGCAGGGGCATCCAGGGCCGTGGTCGCAGCGGGAGC
AGCAGTAAGGGTAGAGGTAGCAGCTGCGGAGGAGGC
back to top