mRNA_A-nodosum_M_contig11.28.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.28.1
Unique NamemRNA_A-nodosum_M_contig11.28.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11.28.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.390e-14
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:    1 AEDTYISQATFLMKELMEIMTSECLQIRV--------PDKPGMDPVQYEQVNKS-------------ELFPEVETAVEVYREVMEEKDLGRALNPTERISVFLDPRRKMMSEDDCIGGGNALQTMAISDIEELGHHFVGNVAQTSR-RTPASA 393
            A DT++SQATF++ E+++++T++   IRV        P   G+ P + E  N+S             +L  E +  V+V  EVM+EK +G+AL   ER+SV LDPRRK + +     G + L+T A +D++     F+G  AQ S   TPA A
Sbjct:  333 ATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKA----FIGKFAQESAPSTPAPA 481
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BLAST of mRNA_A-nodosum_M_contig11.28.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.460e-10
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1 
Query:    1 AEDTYISQATFLMKELMEIMTSECLQIRVPDKPGMDPVQYEQVNKSELFPEVETAVEVYREVMEEKDLGRALNPTERISVFLDPRRKMMSEDDCIGGGNALQTMAISDIEELGHHFVGNVAQTSR-RTPASA 393
            A +T++SQATF++ E               ++  +D +  E+   + L  E +  V+V RE+M+EK +G+AL   ER+SV LDPRRK + +     G + L+T A +D++     F G  AQ S   TPA A
Sbjct:  333 ATETHLSQATFIINEG-----------EGQNESSLDGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKA----FTGKFAQESAPSTPAPA 449
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BLAST of mRNA_A-nodosum_M_contig11.28.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.560e-10
Identity = 50/151 (33.11%), Postives = 75/151 (49.67%), Query Frame = 1 
Query:    1 AEDTYISQATFLMKELMEIMTSECLQIRV------PDKPGMDPVQYEQ--------------VNKSELFPEVETAVEVYREVMEEKDLGRALNPTERISVFLDPRRKMMSEDDCIGGGNALQTMAISDIEELGHHFVGNVAQTSRRTPASA 393
            A+DT+ISQA FL+ E+ME++  E   IR       P  P +D +  E+              ++  +L  E +   +V  EVMEEK +G+AL   ER+S  LDPRRK +       G   L+  A +D+++    F    A++   TPA A
Sbjct:  187 AQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFT---AESVPPTPAPA 334
[Close]
BLAST of mRNA_A-nodosum_M_contig11.28.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.430e-9
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:    1 AEDTYISQATFLMKELMEIMTSECLQIRVPDKPGMDPVQYEQVNKSELFPEVETAVEVYREVMEEKDLGRALNPTERISVFLDPRRKMMSEDDCIGGGNALQTMAISDIEELGHHFVGNVAQTSRRTPASA 393
            A+DT+ISQA F++ E+ME++  +   IR       +  + E++   EL    +  +EV  +VMEEK +G+A+   ER+S  +DPRRK +       G   L+  A  D++ +   F     Q S   PA A
Sbjct:  517 AKDTHISQAMFIIHEVMEMLREDSHPIR-----AQNATEPEEMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQFD---VQPSEPAPAPA 639
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZU3_9PHAE6.390e-1435.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.460e-1034.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE3.560e-1033.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE2.430e-932.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:372421..372857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size438
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866486.0515635-CDS-A-nodosum_M_contig11:372422..3728571680866486.0515635-CDS-A-nodosum_M_contig11:372422..372857Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 372423..372857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.28.1prot_A-nodosum_M_contig11.28.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 372423..372857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.28.1

>prot_A-nodosum_M_contig11.28.1 ID=prot_A-nodosum_M_contig11.28.1|Name=mRNA_A-nodosum_M_contig11.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=145bp
AEDTYISQATFLMKELMEIMTSECLQIRVPDKPGMDPVQYEQVNKSELFP
EVETAVEVYREVMEEKDLGRALNPTERISVFLDPRRKMMSEDDCIGGGNA
LQTMAISDIEELGHHFVGNVAQTSRRTPASAPALAPAPAPSPPPA
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mRNA from alignment at A-nodosum_M_contig11:372421..372857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.28.1 ID=mRNA_A-nodosum_M_contig11.28.1|Name=mRNA_A-nodosum_M_contig11.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=437bp|location=Sequence derived from alignment at A-nodosum_M_contig11:372421..372857- (Ascophyllum nodosum dioecious)
GCTGAGGACACGTACATCAGCCAGGCGACCTTCCTGATGAAGGAATTGAT
GGAGATCATGACCTCTGAGTGTCTTCAAATCCGGGTTCCAGACAAGCCAG
GCATGGATCCCGTACAGTATGAACAAGTAAACAAATCGGAGCTTTTTCCT
GAGGTTGAAACGGCGGTCGAGGTATATCGAGAAGTCATGGAGGAAAAGGA
CCTTGGTAGGGCTTTGAACCCAACTGAGCGCATAAGCGTCTTTCTCGATC
CAAGGAGGAAAATGATGTCCGAGGATGATTGCATTGGCGGTGGCAATGCG
CTTCAAACGATGGCAATATCGGACATCGAAGAGCTAGGACATCACTTCGT
CGGGAACGTCGCGCAGACTTCTAGAAGGACACCAGCCTCTGCACCAGCTC
TAGCCCCTGCACCAGCCCCGTCCCCTCCACCAGCCCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:372421..372857-

>mRNA_A-nodosum_M_contig11.28.1 ID=mRNA_A-nodosum_M_contig11.28.1|Name=mRNA_A-nodosum_M_contig11.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=435bp|location=Sequence derived from alignment at A-nodosum_M_contig11:372421..372857- (Ascophyllum nodosum dioecious)
GCTGAGGACACGTACATCAGCCAGGCGACCTTCCTGATGAAGGAATTGAT
GGAGATCATGACCTCTGAGTGTCTTCAAATCCGGGTTCCAGACAAGCCAG
GCATGGATCCCGTACAGTATGAACAAGTAAACAAATCGGAGCTTTTTCCT
GAGGTTGAAACGGCGGTCGAGGTATATCGAGAAGTCATGGAGGAAAAGGA
CCTTGGTAGGGCTTTGAACCCAACTGAGCGCATAAGCGTCTTTCTCGATC
CAAGGAGGAAAATGATGTCCGAGGATGATTGCATTGGCGGTGGCAATGCG
CTTCAAACGATGGCAATATCGGACATCGAAGAGCTAGGACATCACTTCGT
CGGGAACGTCGCGCAGACTTCTAGAAGGACACCAGCCTCTGCACCAGCTC
TAGCCCCTGCACCAGCCCCGTCCCCTCCACCAGCC
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