mRNA_A-nodosum_M_contig11.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.2.1
Unique NamemRNA_A-nodosum_M_contig11.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5L646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L646_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.130e-17
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRRQDVEHIVRASWATRK 345
            E  + S  +V +AW  +  W  P   A+   L  +LE +    DEDPKLFFSRV QL T+LR+A I K+E+++V ILVR L   +++EKR+ L    L R +++ +VR  +AT K
Sbjct:  178 ENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELENITMSDDEDPKLFFSRVAQLETKLRAAGIAKSEQEVVQILVRQLPARFDVEKRTSLSKRDLTRAELQDVVRGRYATLK 292
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5K6G7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-17
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRRQDVEHIVRASWATRK 345
            E  + S  +V +AW  +  W  P   A+   L  +L  V    DEDPKLFFSRV QL T+LR+  I K+E+++V ILVR L   Y++EKR+ L    L R +++ +VR  +AT K
Sbjct:  232 ENNLYSCHSVAEAWRMMEDWFLPHHPADCQLLVAELANVTMNDDEDPKLFFSRVAQLETKLRAVGIAKSEQEVVQILVRQLPARYDVEKRTSLSKRYLTRAELQDVVRGRYATLK 346
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.570e-17
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRRQDVEHIVRASWATRK 345
            E  + S  +V  AW  +  W  P   A+   L  +L+ +    DEDPKLFFSRV QL T+LR+  I K+E+++V ILVR L   Y++EKR+ L +  L R +++ +VR  +AT K
Sbjct:  178 ENNLYSCHSVAGAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSEQEVVRILVRQLPARYDVEKRTSLSNRDLTRAELQDVVRGRYATLK 292
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.600e-17
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRRQDVEHIVRASWATRK 345
            E  + S  +V +AW  +  W  P   A+   L  +L+ +    DEDPKLFFSRV QL T+LR+  I K+++++V ILVR L   Y++EKR+ L    L R +++ +VR  +AT K
Sbjct:  106 ENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLK 220
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.100e-17
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRRQDVEHIVRASWATRK 345
            E  + S  +V +AW  +  W  P   A+   L  +L+ +    DEDPKLFFSRV QL T+LR+  I K+++++V ILVR L   Y++EKR+ L    L R +++ +VR  +AT K
Sbjct:  106 ENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLK 220
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.320e-17
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRRQDVEHIVRASWATRK 345
            E  + S  +V +AW  +  W  P   A+   L  +L+ +    DEDPKLFFSRV QL T+LR+  I K+++++V ILVR L   Y++EKR+ L    L R +++ +VR  +AT K
Sbjct:  178 ENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLK 292
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5K2K1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K1_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.510e-17
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRRQDVEHIVRASWATRK 345
            E  + S  +V +AW  +  W  P   A+   L  +L+ +    DEDPKLFFSRV QL T+LR+  I K+++++V ILVR L   Y++EKR+ L    L R +++ +VR  +AT K
Sbjct:  178 ENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLK 292
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.510e-17
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRL 279
            EE + +   V +AW  I  W+ P ++AE   LERQLETV     E+PKLFF+RVD ++  +R+  I K+ERQIV  +VR LS +Y++E+++ L
Sbjct:  461 EETLFACSCVPEAWTAIREWSLPTTDAEQRLLERQLETVEMSPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYDVERKTTL 553
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5JFE5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.350e-16
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRRQDVEHIVRASWATRK 345
            E  + S  +V +AW  +  W  P    +   L  +L+++    DEDPKLFFSRV QL T+LR+  I K+++++V ILVR L   Y++EKR+ L    L R +++ +VR  +AT K
Sbjct:   91 ENNLYSCHSVAEAWRMMEDWFLPSHPGDCQLLVAELDSITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLK 205
[Close]
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.270e-15
Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:    1 EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLFFSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRRQDVEHIVRASWATRK 345
            E  + S  +V +AW  +  W  P   A+   L  +L+ +    DE+PKLFFSRV QL T+LR+  I K+++++V ILVR     Y++EKR+ L    L R +++ +VR  +AT K
Sbjct:  178 ENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDDITMSDDENPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQYPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLK 292
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L646_9PHAE1.130e-1741.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6G7_9PHAE1.160e-1741.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LA89_9PHAE4.570e-1740.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU47_9PHAE6.600e-1740.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBS7_9PHAE7.100e-1740.00CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JN41_9PHAE7.320e-1740.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2K1_9PHAE7.510e-1740.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L089_9PHAE9.510e-1745.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFE5_9PHAE1.350e-1639.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVD9_9PHAE2.270e-1538.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:94775..95130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size356
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866485.366542-CDS-A-nodosum_M_contig11:94774..951281680866485.366542-CDS-A-nodosum_M_contig11:94774..95128Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 94775..95128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.2.1prot_A-nodosum_M_contig11.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 94775..95128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.2.1

>prot_A-nodosum_M_contig11.2.1 ID=prot_A-nodosum_M_contig11.2.1|Name=mRNA_A-nodosum_M_contig11.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=118bp
EERVLSAVTVRDAWCQILSWTGPFSEAETLFLERQLETVPNYGDEDPKLF
FSRVDQLLTRLRSADIHKTERQIVNILVRNLSDNYEIEKRSRLDSPLLRR
QDVEHIVRASWATRKTRQ
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mRNA from alignment at A-nodosum_M_contig11:94775..95130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.2.1 ID=mRNA_A-nodosum_M_contig11.2.1|Name=mRNA_A-nodosum_M_contig11.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=356bp|location=Sequence derived from alignment at A-nodosum_M_contig11:94775..95130+ (Ascophyllum nodosum dioecious)
GAGGAGAGAGTGCTGTCGGCCGTAACGGTGAGGGATGCATGGTGCCAAAT
TTTGAGTTGGACCGGGCCTTTCAGTGAGGCCGAAACATTATTTCTCGAGA
GGCAGCTCGAAACTGTTCCTAACTACGGGGATGAGGACCCCAAACTTTTC
TTTTCTAGAGTGGACCAGTTACTTACCCGCCTGCGATCGGCCGATATCCA
CAAAACCGAGAGGCAGATCGTTAACATCCTCGTCCGCAATCTTTCCGATA
ACTACGAGATCGAGAAGCGCTCCCGGCTTGACTCTCCTCTTCTCCGGCGC
CAAGACGTGGAGCATATTGTCCGTGCCTCCTGGGCCACCCGCAAGACGCG
CCAGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:94775..95130+

>mRNA_A-nodosum_M_contig11.2.1 ID=mRNA_A-nodosum_M_contig11.2.1|Name=mRNA_A-nodosum_M_contig11.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig11:94775..95130+ (Ascophyllum nodosum dioecious)
GAGGAGAGAGTGCTGTCGGCCGTAACGGTGAGGGATGCATGGTGCCAAAT
TTTGAGTTGGACCGGGCCTTTCAGTGAGGCCGAAACATTATTTCTCGAGA
GGCAGCTCGAAACTGTTCCTAACTACGGGGATGAGGACCCCAAACTTTTC
TTTTCTAGAGTGGACCAGTTACTTACCCGCCTGCGATCGGCCGATATCCA
CAAAACCGAGAGGCAGATCGTTAACATCCTCGTCCGCAATCTTTCCGATA
ACTACGAGATCGAGAAGCGCTCCCGGCTTGACTCTCCTCTTCTCCGGCGC
CAAGACGTGGAGCATATTGTCCGTGCCTCCTGGGCCACCCGCAAGACGCG
CCAG
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