mRNA_A-nodosum_M_contig11.137.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.137.1
Unique NamemRNA_A-nodosum_M_contig11.137.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:1755197..1755818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog57918.XP_004301644.1
PFAMsLrgB
Model size320
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006996,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009657,GO:0009658,GO:0009706,GO:0009853,GO:0009941,GO:0009987,GO:0015075,GO:0015144,GO:0015238,GO:0015318,GO:0015665,GO:0015711,GO:0015718,GO:0015849,GO:0015850,GO:0015893,GO:0016020,GO:0016043,GO:0019866,GO:0022857,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0034219,GO:0034220,GO:0042170,GO:0042221,GO:0042493,GO:0042873,GO:0042879,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043879,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071840,GO:0097339,GO:0098656,GO:1900866,GO:1901618,GO:1901974,GO:1901975,GO:1903825,GO:1905039
Exons2
Evalue4.15e-05
EggNOG OGsCOG1346@1|root,2QQ63@2759|Eukaryota,37MFJ@33090|Viridiplantae,3GFSH@35493|Streptophyta,4JKTI@91835|fabids
DescriptionPlastidal glycolate glycerate translocator 1
Cds size297
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866485.1898856-CDS-A-nodosum_M_contig11:1755196..17552591680866485.1898856-CDS-A-nodosum_M_contig11:1755196..1755259Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1755197..1755259 -
1680866485.2075236-CDS-A-nodosum_M_contig11:1755563..17557971680866485.2075236-CDS-A-nodosum_M_contig11:1755563..1755797Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 1755564..1755797 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866485.2169514-UTR-A-nodosum_M_contig11:1755797..17558181680866485.2169514-UTR-A-nodosum_M_contig11:1755797..1755818Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 1755798..1755818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.137.1prot_A-nodosum_M_contig11.137.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 1755197..1755797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.137.1

>prot_A-nodosum_M_contig11.137.1 ID=prot_A-nodosum_M_contig11.137.1|Name=mRNA_A-nodosum_M_contig11.137.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp
MVFAHGLSFNIGTSKYLLDVMEEARKNPGWCPQGRIALSTTALDREYDKV
NKHTKIQINELASIYGKTWQTDGWTDKRGTPHTNHIESADGVERFVVAH
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mRNA from alignment at A-nodosum_M_contig11:1755197..1755818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.137.1 ID=mRNA_A-nodosum_M_contig11.137.1|Name=mRNA_A-nodosum_M_contig11.137.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=622bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1755197..1755818- (Ascophyllum nodosum dioecious)
GCTAATGCAGCGTTCGCCCGGATGGTATTCGCACATGGATTATCGTTCAA
CATCGGCACTAGCAAGTACCTCTTGGACGTAATGGAGGAAGCTCGAAAGA
ACCCCGGGTGGTGCCCGCAGGGAAGGATTGCATTAAGCACCACAGCACTC
GACCGCGAGTACGACAAGGTCAACAAGCACACCAAAATACAGATTAACGA
GCTGGCGTCCATCTACGGCAAGACCTGGCAGACTGACGGCTGGACGGACA
AACGGGTGAGAGGTGTATGTGAGGTCGGCTATACTGATTTTTGGTATTTG
ATATTTGGCATTTGGCTATAATGTTTCATCATATTCATTAAATCTTAAAT
CATGCTTCGTTTATCGTGCTTCGAAGTATGCAGCAGCACTGCTGTATCGG
GTTCATTGGTATTGTATATTGTATATTGTATATTGTATGATGTACCAAGT
ATCATTCGTGTATGATCGTGTGAAATAAGCAGAAGTATGATTTTTGCGTT
TTCCATTGACCAGGTCGAACAACGAATGCATTTCGTTTTTTCATCTTTTC
GCACCTCAGGGCACGCCGCACACAAACCACATCGAATCTGCAGACGGGGT
CGAGCGGTTCGTCGTGGCGCAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:1755197..1755818-

>mRNA_A-nodosum_M_contig11.137.1 ID=mRNA_A-nodosum_M_contig11.137.1|Name=mRNA_A-nodosum_M_contig11.137.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig11:1755197..1755818- (Ascophyllum nodosum dioecious)
ATGGTATTCGCACATGGATTATCGTTCAACATCGGCACTAGCAAGTACCT
CTTGGACGTAATGGAGGAAGCTCGAAAGAACCCCGGGTGGTGCCCGCAGG
GAAGGATTGCATTAAGCACCACAGCACTCGACCGCGAGTACGACAAGGTC
AACAAGCACACCAAAATACAGATTAACGAGCTGGCGTCCATCTACGGCAA
GACCTGGCAGACTGACGGCTGGACGGACAAACGGGGCACGCCGCACACAA
ACCACATCGAATCTGCAGACGGGGTCGAGCGGTTCGTCGTGGCGCAC
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