mRNA_A-nodosum_M_contig1099.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1099.8.1
Unique NamemRNA_A-nodosum_M_contig1099.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 7.010e-72
Identity = 132/254 (51.97%), Postives = 159/254 (62.60%), Query Frame = 2 
Query:  389 YQVNPSEILV-------PAYPILLVDNETTDLSDTPGPVGIFLNGVSAAASSWA----------ALYMRPDELDVCGGQADEFGWYSYGNTAGCLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAHATYCLDSCSGFEAELPGVDAFKYRYYASCGHDASTFPYTVNCYRGCCPANVPCGEYVEPCRISGSTDSGYAAGYVPEVKGSLAEPYDAFFITGEDTDLIDSDRSVNCSLFV 1099
            + +NP+  LV       PAYP+LL D  TTDLS   G +G+  NGVS   S+WA          A Y+  D LD CGG A   G Y Y +TAGCLQEQA   +G    +HSP LGWSYDGFPIYGQ GPGGVEMK CG DGA +T CLD CSG+EA +   D F YRYY SCG D S FP+T+NCYRGCCP  V C + +E C        GY   +VP    SL EPYDA  I+G+D D+I +D +VNC+L++
Sbjct:  106 WPINPNPGLVIAINESIPAYPMLLEDGGTTDLSSAAGTIGLMRNGVSMY-SAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQAGAVAG----EHSPLLGWSYDGFPIYGQLGPGGVEMKMCGADGADSTVCLDLCSGYEASID-EDTFTYRYYTSCGFDESFFPFTLNCYRGCCPTGVTCSDRIEACGDGALI--GYTGDHVPVASESLHEPYDALLISGDDEDIIGTDLTVNCTLYL 351
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 2.930e-68
Identity = 125/238 (52.52%), Postives = 147/238 (61.76%), Query Frame = 2 
Query:  416 VPAYPILLVDNETTDLSDTPGPVGIFLNGVSAAASSWA----------ALYMRPDELDVCGGQADEFGWYSYGNTAGCLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAHATYCLDSCSGFEAELPGVDAFKYRYYASCGHDASTFPYTVNCYRGCCPANVPCGEYVEPCRISGSTDSGYAAGYVPEVKGSLAEPYDAFFITGEDTDLIDSDRSVNCSLFV 1099
            VPAYP+L+    TTDLS   G +G+  NGVS   S+WA          A Y+  D  D CGG A   G Y Y  TAGCLQEQA    G    +HSP LGWSYDGFPIYGQ GPGGVEMK CG DGAH T CLD CSG+EA +   D F YRYY SCG D S FP+T+NC+RGCCP    C + +E C +    D GY   YVP    SL E YDA  + G+D +LI S  +VNC+L++
Sbjct:  107 VPAYPMLIASGGTTDLSSAAGTIGLMRNGVSMF-SAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQAGAVKG----EHSPVLGWSYDGFPIYGQLGPGGVEMKMCGADGAHDTACLDLCSGYEATID-EDEFTYRYYTSCGFDESFFPFTLNCFRGCCPTGNTCSDRLEACGVD--ADVGYTDDYVPVALESLDEFYDAELVLGDDLELIGSRTTVNCTLYL 336
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.280e-27
Identity = 77/197 (39.09%), Postives = 94/197 (47.72%), Query Frame = 2 
Query:  527 AALYMRPDELDVCGGQADEFGWYSYGNTAGCLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAHATYCLDSCSGFEAELPGVDAFKYRYYASCGHDASTFPYTVNCYRGCCPANVPCGEYVEPC-----RISGSTDSGYAAGYVPEVKGSLAEPY-DAFFITGEDTDLIDSDRSVNCSLFV 1099
            AA  +  D  D+CGG     G Y Y N  GCLQEQAM A  L+  DHSP LGW+YDGFPIYGQ GP GVEM  CG             SG E                       FP+T+NCYRGCC     C   V+ C      + G TD  + AG   E    L  PY D+  I G+D D + +   ++CS ++
Sbjct:   24 AAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEMLTCG-------------SGPEY----------------------FPFTINCYRGCCEETTRCHSTVQNCIEELGAVIGYTDD-FTAGQSYESL-YLDTPYMDSDLIEGDDVDQVATQDEMDCSFYM 183
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: A0A8J2SB93_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB93_9STRA)

HSP 1 Score: 123 bits (309), Expect = 7.390e-27
Identity = 76/198 (38.38%), Postives = 99/198 (50.00%), Query Frame = 2 
Query:  407 EILVPAYPILLVDN-ETTDLSDTPGPVGIFLNGVSAAASSWAALYMRPDE---------------LDVCGGQADEFGWYSYGNTAGCL--QEQAMVASGLSFSD-HSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAHATYCLDSCSGFEAELPGVDAFKYRYYASC--------------GHDASTFPYTVNCYRG 901
            E+ VPAYP       +  +L  T G +   LNGV     S A  Y+R  +                D C G +   G Y Y     CL  Q +A    G + ++ HSPQ+GW+ DGFPIYG +GP GV+++ CG  GAHATYC D C G E EL GVD++KYRYY +                 +A  FPYT+ C+RG
Sbjct:   88 EVEVPAYPKFKDSQPDPKELDCTMGTIAYALNGVGFF--SGAVSYVRGGDCPQLDVSDPEAEWISFDCCTGHSTGDGLYHYHFPPSCLLAQAEADAPMGTTVANGHSPQIGWAQDGFPIYGPYGPEGVQIQNCGSAGAHATYCQDECGGLEMELDGVDSYKYRYYITGKVGDLESLPSNPKPDSEALYFPYTIRCHRG 283
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: R1DKM5_EMIHU (YHYH domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKM5_EMIHU)

HSP 1 Score: 122 bits (307), Expect = 1.000e-26
Identity = 89/237 (37.55%), Postives = 116/237 (48.95%), Query Frame = 2 
Query:  407 EILVPAYPILLVDNETTDLSDTPGPVGIFLNGV---SAAASSWAALYMRPDE-------LDVCGGQA-----DEFGWYSYGNTAGCLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAHATYCLDSCSGFEAELPGVDAFKYRYY--------ASCGHD----ASTFPYTVNCYRGCCPANVPCGEYVEPCRISGSTDSGYAAGYVPEVKGSLAEPYDAFF 1036
            +I +PAYP+L  +N+     +    + + LNGV   S A  S     +  D+        D CGG A     +  G Y Y     CL+ Q     G     HSPQ+GWS DGFPIYG+ GPGGV M+   + G   TYCLD CSGFE E+PG+D F YRYY         S   D    AS +P+ + CYRGC  A++  G      + SG + SGY   Y      +LA   D F+
Sbjct:   75 QIDIPAYPVLATENDAWPECEKE-TIAMALNGVPIYSGAVGSGDCDILDLDDANAEWTSFDFCGGHARCLAFECNGDYHYHFPPSCLETQI----GNLTDGHSPQIGWSLDGFPIYGRLGPGGVTMEHTAQ-GCTGTYCLDDCSGFEMEIPGLDEFTYRYYFNGPLSDLVSLPTDPKPSASDYPFAMKCYRGCTYADLSAGA----AKCSGGS-SGYTNAYTAT---ALAGVTDIFY 297
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: A0A8J2X3U2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3U2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.770e-26
Identity = 76/189 (40.21%), Postives = 96/189 (50.79%), Query Frame = 2 
Query:  416 VPAYPILLVDNETTDLSDTPGPVGIFLNGVSAAASSWAA-LYMRPDELDV------------CGGQADEFGWYSYGNTAGCLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAHATYCLDSCSGFEAELPGVDAFKYRYYASC--------------GHDASTFPYTVNCYRG 901
            VPA P L       +L  + G V   LNGV   + + A  L     +LDV            C G +   G Y Y     CL  QA   + ++   HSPQ+GW+ DGFPIYG FGPGGVE++ CG  GA ATYC D+C G+E EL GVD +KYRYY +                 +A  FPYT+ C+RG
Sbjct:  128 VPANPKLKNSFTAGELDCSMGTVAYALNGVGFYSGAVAFDLGGNCPQLDVADPEAEWISFDCCSGHSTGSGGYHYHFPPSCLIAQANADAPIA-GGHSPQIGWAQDGFPIYGPFGPGGVEIRNCGASGADATYCQDACGGYEGELDGVDNYKYRYYVTGKVGDLNALPSNPKPDSEALYFPYTIRCHRG 315
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: R1DZX8_EMIHU (EF-hand domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZX8_EMIHU)

HSP 1 Score: 122 bits (305), Expect = 1.440e-24
Identity = 81/226 (35.84%), Postives = 105/226 (46.46%), Query Frame = 2 
Query:  386 TYQVNPSEILVPAYPILLVDN------ETTDLSDTPGPVGIFLNGVSAAASSWAALYMRP-----DELDVC----------GGQADEFGWYSYGNTAG----------CLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAHATYCLDSCSGFEAELPGVDAFKYRYYASCGH-----------------DASTFPYTVNCYRGCCPANV 919
            T       + +PAYP     +        TDLS+  G VG+ LNGV A  ++WA  Y        DE DV           G   D  G +S G++AG          CL  Q     G     HSPQ+GW YDGFP+YG FGP GV+M  CG+ GAH  YCLD+C+G+ ++   +D FKYRYY S                    ++S FP+T  C  GC P+  
Sbjct:  394 TNSAGAKAVSIPAYPFFNGASYEDALAAATDLSEQGGDVGLTLNGV-AIYTAWAGSYDXXXXXXIDEDDVMSETSNAVTAEGETFDRCGGHSSGSSAGFQYHYHIPPTCLLAQL----GQYIGQHSPQVGWMYDGFPVYGPFGPDGVQMIKCGQTGAHEVYCLDACNGYYSDDESIDVFKYRYYMSGNTTDQASLRASPLPTSDPVESSFFPFTPLCSLGCKPSGA 614
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: A0A813E7E6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E7E6_POLGL)

HSP 1 Score: 110 bits (274), Expect = 2.390e-21
Identity = 70/204 (34.31%), Postives = 92/204 (45.10%), Query Frame = 2 
Query:  458 DLSDTPGPVGIFLNGVSAAAS------------SWAALYMRPDELDVCGGQAD-EFGWYSYGNTAGCLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAH--ATYCLDSCSGFEAELPGVDAFKYRYYA--------SCGHDAST------FPYTVNCYRGCCPANVPCGEYVEPCRISGSTDSGYAA 982
            DLS T  P+GI  NG    +             S +A Y+     D CG      FG +   +   CL  Q    SG     HSPQ+GW++DGFP+YG  GPGGV M+ C   G    A  C D C G+      +D + YRYY         SC +   T      +P T  C+ GCCP+ V C  +V+ C   G++  GY A
Sbjct:   99 DLSQTGSPIGILFNGGKLFSPYAGSETGQVKNYSTSATYLIGSTFDQCGCFTTLHFGCHVPPH---CLLNQLGQTSG----SHSPQIGWAFDGFPVYGPRGPGGVMMQTCSITGGTYGAAVCTDDCGGYYQNDGTIDEYYYRYYIQGTYDDGDSCSNPGCTSPGADYYPNTPVCFGGCCPSGVTCKSFVKACPTGGTSSKGYGA 295
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: A0A0G4G8Z0_9ALVE (YHYH domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G8Z0_9ALVE)

HSP 1 Score: 106 bits (264), Expect = 4.950e-21
Identity = 69/212 (32.55%), Postives = 92/212 (43.40%), Query Frame = 2 
Query:  416 VPAYPILLVDNETTDLSDTPGPVGIFLNGV------------SAAASSWAALYMRPDELDVCGGQA--DEFGWYSYGNTAGCLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAHATYCLDSCSGFEAELPGVDAFKYRYY---------ASCGHDAST------FPYTVNCYRGCCPANVPCGEYVEPCRISGST 964
            VP YP     + T   + + GPVG+  +G                  S +A+ +     D+CG  A  +E   Y   +   CL  Q      ++ SDHSPQ+GW+ DGFPIYG  GP G  M+ C   G  +  C DSC G+ A L  VD + YRYY          +CG    T      +P T  C  GCCP+   C     P   S +T
Sbjct:   76 VPLYPEY-ESSATVSFTTSVGPVGVLFSGAYVFSPYSEIVQTEVTGFSSSAVQLEKGTFDLCGCHASSNEAPSYHCHHPPDCLLRQMN----MNESDHSPQIGWAADGFPIYGPRGPDGTIMRTCSSQGLSSGVCTDSCGGYAATLSTVDTYTYRYYLQGNAISGVGTCGSPDGTVSGSEHYPQTPPCLMGCCPSGATCSLSTLPSCGSSTT 282
[Close]
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Match: R1D5Z9_EMIHU (YHYH domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5Z9_EMIHU)

HSP 1 Score: 100 bits (248), Expect = 3.660e-19
Identity = 73/220 (33.18%), Postives = 94/220 (42.73%), Query Frame = 2 
Query:  416 VPAYPILLVDNETTDLSDTPGPVGIFLNGV---SAAASSWAALYMRPDE-------LDVCGGQADEFGW----------------------------YSYGNTAGCLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACGRDGAHATYCLDSCSGFEAELP--------GVDAFKYRYY------------ASCGHDASTFPYTVNCYRG 901
            +PAYP+L  +N+     +    + + LNGV   S A        +  D+        D CGG A  FG                             Y Y     CL+ Q     G     HSPQ+GWS DGFPIYG+ GPGGV M+   + G   T+CLD CSGFE E+P        G+D FKYRYY             +    AS +P+ + CYRG
Sbjct:   90 IPAYPVLATENDARPECEKE-TIAMSLNGVPIYSGAVGPSDCDILDLDDANAKWTSFDFCGGHARCFGGEGGXXXXXXXXXXXXXXXXXXXXECKGDYHYHFPPSCLETQI----GNLTDGHSPQIGWSLDGFPIYGRLGPGGVTMEHTAQ-GCTGTFCLDDCSGFEMEIPRRTSQEIPGLDEFKYRYYFNGPLSDLVSLPTNPKPSASDYPFAMKCYRG 303
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1099.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUL4_ECTSI7.010e-7251.97YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KP42_9PHAE2.930e-6852.52YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LCJ6_ECTSI1.280e-2739.09YHYH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8J2SB93_9STRA7.390e-2738.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1DKM5_EMIHU1.000e-2637.55YHYH domain-containing protein n=1 Tax=Emiliania h... [more]
A0A8J2X3U2_9STRA2.770e-2640.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1DZX8_EMIHU1.440e-2435.84EF-hand domain-containing protein n=2 Tax=Emiliani... [more]
A0A813E7E6_POLGL2.390e-2134.31Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A0G4G8Z0_9ALVE4.950e-2132.55YHYH domain-containing protein n=1 Tax=Chromera ve... [more]
R1D5Z9_EMIHU3.660e-1933.18YHYH domain-containing protein n=1 Tax=Emiliania h... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1099contigA-nodosum_M_contig1099:71492..77046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUL4
PFAMsYHYH
Model size2363
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.01e-77
EggNOG OGs2CZR0@1|root,2SBB2@2759|Eukaryota
DescriptionYHYH protein
Cds size996
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1099.8.1prot_A-nodosum_M_contig1099.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1099 72558..76745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866484.0259993-UTR-A-nodosum_M_contig1099:71491..725571680866484.0259993-UTR-A-nodosum_M_contig1099:71491..72557Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1099 71492..72557 -
1680866484.1040454-UTR-A-nodosum_M_contig1099:76745..770461680866484.1040454-UTR-A-nodosum_M_contig1099:76745..77046Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1099 76746..77046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866484.0373867-CDS-A-nodosum_M_contig1099:72557..725681680866484.0373867-CDS-A-nodosum_M_contig1099:72557..72568Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1099 72558..72568 -
1680866484.045445-CDS-A-nodosum_M_contig1099:72921..731071680866484.045445-CDS-A-nodosum_M_contig1099:72921..73107Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1099 72922..73107 -
1680866484.0535734-CDS-A-nodosum_M_contig1099:73879..740581680866484.0535734-CDS-A-nodosum_M_contig1099:73879..74058Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1099 73880..74058 -
1680866484.061724-CDS-A-nodosum_M_contig1099:74336..744101680866484.061724-CDS-A-nodosum_M_contig1099:74336..74410Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1099 74337..74410 -
1680866484.0706494-CDS-A-nodosum_M_contig1099:74802..749071680866484.0706494-CDS-A-nodosum_M_contig1099:74802..74907Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1099 74803..74907 -
1680866484.0785475-CDS-A-nodosum_M_contig1099:75346..753971680866484.0785475-CDS-A-nodosum_M_contig1099:75346..75397Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1099 75347..75397 -
1680866484.086572-CDS-A-nodosum_M_contig1099:75824..759961680866484.086572-CDS-A-nodosum_M_contig1099:75824..75996Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1099 75825..75996 -
1680866484.094363-CDS-A-nodosum_M_contig1099:76527..767451680866484.094363-CDS-A-nodosum_M_contig1099:76527..76745Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1099 76528..76745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1099.8.1

>prot_A-nodosum_M_contig1099.8.1 ID=prot_A-nodosum_M_contig1099.8.1|Name=mRNA_A-nodosum_M_contig1099.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=332bp
MYFRVCHRLVDSSDSLAEHISIFVIPSETYQVNPSEILVPAYPILLVDNE
TTDLSDTPGPVGIFLNGVSAAASSWAALYMRPDELDVCGGQADEFGWYSY
GNTAGCLQEQAMVASGLSFSDHSPQLGWSYDGFPIYGQFGPGGVEMKACG
RDGAHATYCLDSCSGFEAELPGVDAFKYRYYASCGHDASTFPYTVNCYRG
CCPANVPCGEYVEPCRISGSTDSGYAAGYVPEVKGSLAEPYDAFFITGED
TDLIDSDRSVNCSLFVAWDPLASTNFPTPSPSEFGIYSSDLGLLGSDFAM
SSAAPSAMPSAMPSAMPSAMPTSSPTNLGSS*
back to top

mRNA from alignment at A-nodosum_M_contig1099:71492..77046-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1099.8.1 ID=mRNA_A-nodosum_M_contig1099.8.1|Name=mRNA_A-nodosum_M_contig1099.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5555bp|location=Sequence derived from alignment at A-nodosum_M_contig1099:71492..77046- (Ascophyllum nodosum dioecious)
GAAAGACGACGATCTCGTCCATCTCGAACTCGTAGGACAATACCCCGGGA
GAAAGGAGCACTCATAAAAAAAAAAAAAAAAACGCATTCGTGTGATAGGC
ACAGACGAAAGGGATCGATTCGTAAAGTGCCGTGCGACAGTGCTGGAGAC
AGTACTTTTGAGAGTCGTTTGTATCACCGAATCAGAGGAGAATAAAGGAA
GTTGTATCGTAGGAGGAGAGGTACGTCGCAGCGCAATTTTAAGCAGAGTG
TGTGCCAGGTAAGGTGACCTGATTTTGGCCACGAACGAGGCAATCCACTT
TATGTACTTTAGAGTTTGCCATCGGCTTGTCGACTCGTCCGATTCTCTGG
CCGAGCACATTTCCATTTTCGTAATTCCGTCCGAGACGTATCAGGTGAAC
CCTTCCGAAATACTCGTTCCAGCCTATCCCATACTACTCGTGGACAACGA
AACCACCGATCTGAGCGACACCCCCGGCCCGGTGGGCATTTTCTTGAATG
GCGTCTCAGCCGCAGCAAGGTATTTTGCGATATTGCGCCCAGTTATTGGG
AGTGCACCAGGCCGGTGACGTGGTTGGCGTTTGTATCCAGCACACGTCAT
TGGATCGTGCGATTTAGGGATGTTAAGACTCTGCTTGGACTCCAGTTTCG
CCAGCCAAGATGTGTCATTTCATGAATGAATTCGCTCGGAAGCCCTCCCC
CCCCCCGTGCCAAAAATCTCGGGGTAGTGTGTAATCAGTTCCGCTGTGGG
GTGCAGAATATTTGTTTGGATCGCCTCGATCGGTATCACATATACGAGGC
GACTCTTGTGTCAGCGCAGACTTTTTTTCGTGATTTCCCGTAAGCCTGGA
TCTCGGTTATCAGCCCGCCCTCTGAACTTGAAACGGCGGGCATCAGAACA
TCAGACCGTTTGAATCAAACGCCGCAAAAAAAAGTCAAAAGATAAAGCCA
CTGCGACAAAGCCTTCCGGGGAAAACAACCGTATTTTAATCCGTCTTTAA
CAAAATTGTTGACACCACGCCCTGATATTTGGGGTTCTCTTCCGACGCAG
CTCATGGGCGGCTCTCTATATGAGGCCGGACGAGCTGGATGTCTGCGGTG
GCCAGGCGGACGAATTCGGCTGGTACAGTTATGGCAACACTGCCGGCTGC
CTTCAAGAGCAAGCCATGGTCGCATCTGGGTTATCCTTCTCCGATCATTC
CCCTCAGCTCGGGTGGTCCTATGTGAGTCTGGTCCCACGGCCAACTGACT
GTAGCCTCTGAATAATCTTGAATCTAGCAGATTCGGCTCGTGGCCGAAGG
ATGGACTGTACCTTGCGAGTTAAGGGTAGATGGGGAAGCAAGCGCGACCC
TGTAGAGATTTTGTTTATCGGGAAAGCGGCCGAGGCACTCTTGGAGTGCT
CCCGCAAGAGAGTTGTTCGTGAGGAGATATTCACAGCGTGCTTGCCAAGC
GTGAAATAATTTTCAAGGTAACGTAACGTTTTGAGACAGGGTAAACATTG
CGCCCAGCCTACTAACACCAAGCATCACCCAGCAGGTCGCTGGAGGCCGC
ATTCGCGAAGTATTGGGGCTGATGTTTAACTTAAGTACTCTGTTGCTCTA
TTTTTGCCGTCCTGCGTGCTCATGGTAATGTGCATGCAATGATTTGCAGG
ATGGTTTCCCCATCTACGGGCAGTTTGGCCCTGGAGGAGTAGAGATGAAG
GTGAGAGACCATTTGTGCGACAACGACAAACATGTCGTCTCCAGCTCTGG
CACGGCCGGCCGAAATGAGGCGGCAATGGATCGAGCCTTGTCTTACGTAG
GCGTGAGGACGTCGACAACTTTATGGAGCGGCAGCTCCTCCCCCCCCTCA
TCGTGTCCTACTACTTGGGCTGGTTCCGTCGCGTGCGCCGAAATATGTAT
GCAACGTGCGTCAGCAGTTCGATCGCCCAGTCAAACCGGCCGGAAATCGT
TGCACGCCAAACCGACTGAGGGGACGTGGCTTTCGTAGGACAGGCCCGCC
AACGTACGTACACGGTTATTTTTACGTACTACATGGCCCGCATTCCGACC
TGCTGCGCCCCGCCAGTGACTCGAACTTAGCTCTAGTGATATTGATTTTC
GAACTTATTTGACTGCGATCGTTAACTTTCCTTTGAAAGGCATGTGGCAG
AGATGGTGCTCACGCCACATACTGCTTGGACTCTTGCTCTGGGTTCGAGG
CAGAGCTCCCGGGCGTTGACGCCTTCAAGTATCGGTACTACGCGGTAAGC
GAATCTCGCTTGTGGTGAGGTAGATATACGGTTTTGCCAGATCGACGAGA
AGCACGGCTTCAATGGCGATGCGGCCGTAGAAATTTTCGACATGGTACGA
TTTGATGGTTGGCGATACCGAATCCTAACACCTAAACTCGCCTGCGAAAC
ACTCTTTGCCCACATTGACCGTCTGGGCAGCTGTAAATTTCCCGGAAGTA
CTGCGTGAGAACAAAAACGGACTAGCTGCAGCTTGTACGATTCACCGATG
TGGATACAAAATTGAGTTTTTGCGCCCCCTGTCTGTTACTTTTATCTCAT
GATCACCGTATGATGACAGTTCACCCCCTCTCTCCTTGCTTTGCTCGACG
CATCTCATCAATGGGACGTGATCTTATCGACAAAAGTCATGCGGTCATGA
TGCATCTACCTTCCCGTACACAGTGAACTGTTACCGTGGGTGCTGCCCAG
CTAACGTCCCGTGAGTACCGGTGTAGAACGGCACAGCCTTTGAACGATGC
ACGTAGTGATTCGGATAGACGCTTGCTCCTTCCACGAGCTCGTCATCGAT
TCCTTTCGGGTGGTCTCACCCTGCCCTCTCCTCCCCCCCCGACGGGTAGC
AATTATGCCTGCGAACACCGGACGATTGAAAACAAATATCGTACGACGCG
GCAAATAATGTGATACAGCCCTACGAATCGTTATGAATGAGACTTATGGA
AAGCTTTGATTTGCATCACGCATATTCTCTCCGCCTAGATGCGGCGAGTA
CGTCGAACCATGCAGGATATCGGGTTCCACAGATTCAGGGTACGCTGCCG
GATATGTGCCCGAGGTTAAGGGGAGTCTTGCCGAGCCTTACGACGCGTTT
TTCATCACCGGAGAGGACACGGACTTGATCGACAGCGACCGCTCGGTCAA
TTGCAGCTTGTTCGTTGGTGAGTAAACCCGCAGTAAATGCTGATGCTGAA
CTACAATCTCGTTTCTGGAAAATATCTAGAAGAAGCATTCAGGCAGGCAT
GCGAGCTTCTCTTGCTTGACAAGAGAAAGGGCCAAAAGGCTTTCGGCGCG
GTCGGAGGTCGGATCCACTCGTCTAAGGTTTTAGACGTTTTAAGAGTCGC
TCAACGAAAGGGGGGGGGAGCGTCGCAAACTTTTCCCAAAATTGAGAGGG
GGGAGGAGGGGGGAAAAATAAAGCCCCCTCCTGGGGACAGATCTACCAAA
TAAACCCATGGTGGGTTTAGTTTGGGGCAAGCTTGCTTATCATGTACGTA
CGTGATCATGCAGTCCCGTTCTCGGAAAGGACTGTTTTGGTGTCACCTCT
CCAGAAATTGGGGCCGGGATCTCAAATCTTCCCACTCCCCCCTTGTTGTT
GTTGTTGTCGGTTAGTCCTAACTTTGTACATTTACATTAACTGTTAATAT
ACCAGCACGCACCGGCTGGCAGTGGTACCCTGAGACGGCCGCTTTATACG
GGGCGGTTCACTGCCAAAGCACGTCAAAATGGCAAATACTCGTTCGCTCG
CCCCCCCCGTTCGTTATGCCTATGCCTCCGGATTCAACCAGCCGTGAAGA
TAGGTTTGGCAAGTCTACAGGTGTTTTCACGCTTGTTGTAGAATGACGGG
CGATTTGCCGGTCCCCCCACCTCGCCTACTGAACCTCAATTGCTTACACG
TCCTTTCTCCCGCCGGCGTATTTTTTCTTCTTGCTTCAGCATGGGATCCA
TTGGCCAGTACCAACTTTCCAACCCCTTCTCCGTCAGAGTTCGGCATATA
TAGTTCGGATCTTGGCTTACTCGGTTCGGACTTTGCCATGTCGTCAGCGG
CTCCCTCGGCCATGCCGTCCGCCATGCCGTCGGCCATGCCGTCTGCCATG
CCGACCTCTTCGCCGACTAATTTAGGTGGAGTTTCAATCTGAAAGGCAGA
AGCACTCGATTTAATTTTGAGCCAATGCACTGCAAAAATATCTGAGAATG
CCCCCCCGCTAAACCAAAGGAAGCTAATAAATATATCAAGCAAACGGTAC
AGCTTTGGAGGGGTCGACAGAAGCTCTAACCCGTCCCCCCCCGGAACATT
TGATAAATGTGGTACGTGTTTCGAAGCCGTTACGTAATGCGTTGTAGTAG
TATGCCGAAAACAAGGTACTAGGGAGGTGAACGTTTTCCATGCCGGAACA
TCTCAGAAGTCCTTTCGGCATCCATTCGTGTAAAAGCACAAGCTAATTAC
GCGCCGTTTCTAATCCCTATCGCTTTAGGATCTTCGTGAGGCGTTTTCAC
CGTCTCGCCCCGAGGAGATTTGTGAACGAGACGTTTACTAGTTGAGGGGC
GTATACGCACGGTGTTGGAAGCGTCGGTCCACGAGCTTGCTAAGGAATCG
CAAGTAACGCCAATGGTTTGATCTGGCAGTCTCCACGGTGACGGCAGCGT
TGAGGGGACGTCAGCGAGTTGAGATTACAGAGAGTAGATGCAATGCTTCC
GGAGAGACTGTCCTTGAACACTTGTAAACATTTACCGTGATCATTCGTTT
TGACACCTCGACGCGCCAATCGATCCGTTATTTTGGCCACCGCTTCATCC
ACAGAATGAACCCAAAAAGGTATAAATCATTCATGTTGTTGACTTGGCGG
TATTGATGTACTCGTACTTGGGGGTGATGTTGACTTGGTGGCAGCGAAAA
ATCATATTGGTAGCAGCATCCAAGAGCATCGTTGGTAGATTTTGTTTAAA
ACAACCTGAAGAGAAGGATGCGATGAAAGTAGGTCTGTTCCCTGGCGAGC
TTTTTCTCCAACTAATGTCTACCACCGTAGACACAGGCGTGGATAATTTT
ATGCGGGAATTTTGAAGTCCGTCTTCTACAGACGATTTTTTTTTTTACAA
TGATGAAGAATCTTACTGGGCGGAGGTTGAAGGAAATGGGGGAGGAAACT
GAAAATTTTGCTGTCGAACGGTTCGATACATATCTAATCTTCTTACACCG
TAGGGTTAACGAACTTGTGCGATAGACGCAGAAGCGTCGACGCCCTGTCG
TCTCGATGCTCGCTGTGTATTCGTAACATGATGACGGCTTGGTCAAGTGG
CTTGCCGTTATTTATCGTGTGGTGAAGCTTTAGGTTGTCCGACTTCGCTG
GTAATGTCTTCTACGGTGTGGTGTATCATGTAGGCACTACTACCAAAAAT
ATCATGGTAGGACCCCACCCGAGCCAGTAAGCTTCGTACACTATTGAAGC
GTCGAAAATATCATTTCAACATCACTACGTCAATTTGACAAATATCTTAC
CGGTAAACGCCGTAAACCACGGGGTTCAAGCTCCGTAGACCATCGAAGAC
CCAAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1099:71492..77046-

>mRNA_A-nodosum_M_contig1099.8.1 ID=mRNA_A-nodosum_M_contig1099.8.1|Name=mRNA_A-nodosum_M_contig1099.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at A-nodosum_M_contig1099:71492..77046- (Ascophyllum nodosum dioecious)
ATGTACTTTAGAGTTTGCCATCGGCTTGTCGACTCGTCCGATTCTCTGGC
CGAGCACATTTCCATTTTCGTAATTCCGTCCGAGACGTATCAGGTGAACC
CTTCCGAAATACTCGTTCCAGCCTATCCCATACTACTCGTGGACAACGAA
ACCACCGATCTGAGCGACACCCCCGGCCCGGTGGGCATTTTCTTGAATGG
CGTCTCAGCCGCAGCAAGCTCATGGGCGGCTCTCTATATGAGGCCGGACG
AGCTGGATGTCTGCGGTGGCCAGGCGGACGAATTCGGCTGGTACAGTTAT
GGCAACACTGCCGGCTGCCTTCAAGAGCAAGCCATGGTCGCATCTGGGTT
ATCCTTCTCCGATCATTCCCCTCAGCTCGGGTGGTCCTATGATGGTTTCC
CCATCTACGGGCAGTTTGGCCCTGGAGGAGTAGAGATGAAGGCATGTGGC
AGAGATGGTGCTCACGCCACATACTGCTTGGACTCTTGCTCTGGGTTCGA
GGCAGAGCTCCCGGGCGTTGACGCCTTCAAGTATCGGTACTACGCGTCAT
GCGGTCATGATGCATCTACCTTCCCGTACACAGTGAACTGTTACCGTGGG
TGCTGCCCAGCTAACGTCCCATGCGGCGAGTACGTCGAACCATGCAGGAT
ATCGGGTTCCACAGATTCAGGGTACGCTGCCGGATATGTGCCCGAGGTTA
AGGGGAGTCTTGCCGAGCCTTACGACGCGTTTTTCATCACCGGAGAGGAC
ACGGACTTGATCGACAGCGACCGCTCGGTCAATTGCAGCTTGTTCGTTGC
ATGGGATCCATTGGCCAGTACCAACTTTCCAACCCCTTCTCCGTCAGAGT
TCGGCATATATAGTTCGGATCTTGGCTTACTCGGTTCGGACTTTGCCATG
TCGTCAGCGGCTCCCTCGGCCATGCCGTCCGCCATGCCGTCGGCCATGCC
GTCTGCCATGCCGACCTCTTCGCCGACTAATTTAGGATCTTCGTGA
back to top