mRNA_A-nodosum_M_contig1097.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1097.5.1
Unique NamemRNA_A-nodosum_M_contig1097.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: A0A7I8J9K8_SPIIN (Histone H4 n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8J9K8_SPIIN)

HSP 1 Score: 184 bits (468), Expect = 1.550e-58
Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:    1 VRTRKGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            VR+ KGREG+G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 VRSGKGREGAGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: A0A2J6LKC2_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LKC2_LACSA)

HSP 1 Score: 183 bits (464), Expect = 4.880e-57
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 1 
Query:    1 VRTRKGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            VRT KGR+G G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   89 VRTWKGRKGFGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 190
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: A0A671WNM0_SPAAU (Histone H4 n=2 Tax=Sparus aurata TaxID=8175 RepID=A0A671WNM0_SPAAU)

HSP 1 Score: 178 bits (452), Expect = 2.060e-56
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:    4 RTRKGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            R RKG +G G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 RQRKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: UPI001BE4C7AC (histone H4-like n=1 Tax=Anopheles merus TaxID=30066 RepID=UPI001BE4C7AC)

HSP 1 Score: 179 bits (455), Expect = 2.740e-56
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 1 
Query:   10 RKGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            RKGR+G G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   47 RKGRKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 145
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.160e-56
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:   13 KGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            KG +G G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.160e-56
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:   13 KGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            KG +G G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 177 bits (449), Expect = 5.910e-56
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:   13 KGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            KG +G G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 177 bits (450), Expect = 8.350e-56
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:   13 KGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            KG +G G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   28 KGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: A0A194R5I7_PAPMA (Histone H4 n=2 Tax=Endopterygota TaxID=33392 RepID=A0A194R5I7_PAPMA)

HSP 1 Score: 177 bits (448), Expect = 8.400e-56
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:   13 KGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            KG EG G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGEGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Match: A0A3P9B440_9CICH (Histone H4 n=2 Tax=Bilateria TaxID=33213 RepID=A0A3P9B440_9CICH)

HSP 1 Score: 177 bits (448), Expect = 8.670e-56
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:   10 RKGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            RKG +G G+G  KRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 RKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 104
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7I8J9K8_SPIIN1.550e-5891.18Histone H4 n=1 Tax=Spirodela intermedia TaxID=5160... [more]
A0A2J6LKC2_LACSA4.880e-5791.18Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID... [more]
A0A671WNM0_SPAAU2.060e-5690.10Histone H4 n=2 Tax=Sparus aurata TaxID=8175 RepID=... [more]
UPI001BE4C7AC2.740e-5691.92histone H4-like n=1 Tax=Anopheles merus TaxID=3006... [more]
A0A024G0M5_9STRA4.160e-5692.86Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
F0W2L9_9STRA4.160e-5692.86Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
H4_SOLLC5.910e-5691.84Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
A0A3L6V663_9STRA8.350e-5692.86Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A194R5I7_PAPMA8.400e-5691.84Histone H4 n=2 Tax=Endopterygota TaxID=33392 RepID... [more]
A0A3P9B440_9CICH8.670e-5690.91Histone H4 n=2 Tax=Bilateria TaxID=33213 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1097contigA-nodosum_M_contig1097:171540..171848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog8932.XP_005515123.1
PFAMsCENP-T_C
Model size311
Max annot lvl33208|Metazoa
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.38e-57
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota,3A4QH@33154|Opisthokonta,3CPD5@33208|Metazoa,3DM6V@33213|Bilateria,48PX2@7711|Chordata,49IKE@7742|Vertebrata,4GV52@8782|Aves
DescriptionCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
Cds size309
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866481.8649886-CDS-A-nodosum_M_contig1097:171539..1718481680866481.8649886-CDS-A-nodosum_M_contig1097:171539..171848Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1097 171540..171848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1097.5.1prot_A-nodosum_M_contig1097.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1097 171540..171848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1097.5.1

>prot_A-nodosum_M_contig1097.5.1 ID=prot_A-nodosum_M_contig1097.5.1|Name=mRNA_A-nodosum_M_contig1097.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=103bp
VRTRKGREGSGQGWCKRHRKVLRDNIHGITKPAIRRLARRGGVKRISGLI
YEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGF
GG*
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mRNA from alignment at A-nodosum_M_contig1097:171540..171848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1097.5.1 ID=mRNA_A-nodosum_M_contig1097.5.1|Name=mRNA_A-nodosum_M_contig1097.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:171540..171848+ (Ascophyllum nodosum dioecious)
GTCCGGACGCGGAAAGGGAGGGAAGGGTCTGGGCAAGGGTGGTGCAAGCG
CCACCGGAAGGTTCTGCGCGACAACATCCACGGTATCACCAAGCCCGCGA
TCCGCCGGCTGGCTCGTCGTGGCGGTGTAAAGCGCATCTCTGGCCTTATC
TACGAGGAAACGCGCGGTGTGCTCAAGGTATTCTTGGAGAACGTCATCCG
CGACTCGGTGACCTACACAGAGCACGCTCGCCGGAAGACTGTGACGGCAA
TGGATGTGGTGTACGCTCTTAAGCGCCAGGGCCGCACCCTATACGGTTTT
GGCGGCTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1097:171540..171848+

>mRNA_A-nodosum_M_contig1097.5.1 ID=mRNA_A-nodosum_M_contig1097.5.1|Name=mRNA_A-nodosum_M_contig1097.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:171540..171848+ (Ascophyllum nodosum dioecious)
GTCCGGACGCGGAAAGGGAGGGAAGGGTCTGGGCAAGGGTGGTGCAAGCG
CCACCGGAAGGTTCTGCGCGACAACATCCACGGTATCACCAAGCCCGCGA
TCCGCCGGCTGGCTCGTCGTGGCGGTGTAAAGCGCATCTCTGGCCTTATC
TACGAGGAAACGCGCGGTGTGCTCAAGGTATTCTTGGAGAACGTCATCCG
CGACTCGGTGACCTACACAGAGCACGCTCGCCGGAAGACTGTGACGGCAA
TGGATGTGGTGTACGCTCTTAAGCGCCAGGGCCGCACCCTATACGGTTTT
GGCGGCTAA
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