mRNA_A-nodosum_M_contig1097.26.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 210 bits (535), Expect = 2.050e-68 Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVANK 372
M+GKGKGGRG KK+T+RS+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 208 bits (530), Expect = 6.940e-67 Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK+T+RS+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 163
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 206 bits (524), Expect = 1.490e-66 Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK+TS+SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 206 bits (524), Expect = 7.610e-66 Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK+TS+SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.460e-65 Identity = 105/120 (87.50%), Postives = 113/120 (94.17%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK TSRS+KAGLQFPVGRIGRF+K GKYS RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRH+QLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 202 bits (515), Expect = 2.880e-65 Identity = 104/124 (83.87%), Postives = 116/124 (93.55%), Query Frame = 1
Query: 1 MTGKGKGGRG-DKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVAN 369
M GKGKGGRG + KK+TS+SSKAGLQFPV R+GRFLK G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK A+
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS 124
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: B7FZS7_PHATC (Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=B7FZS7_PHATC) HSP 1 Score: 200 bits (508), Expect = 4.500e-64 Identity = 100/118 (84.75%), Postives = 112/118 (94.92%), Query Frame = 1
Query: 7 GKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
GKGKGGRGDKK+TTS SSKAGLQFPVGRIGR+L+ GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+ LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKK
Sbjct: 10 GKGKGGRGDKKQTTSSSSKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGNVTIAAGGVLPNIHAILLPKK 127
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.950e-63 Identity = 101/122 (82.79%), Postives = 115/122 (94.26%), Query Frame = 1
Query: 7 GKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVANK 372
GKGKGGRGDKK S+S+KAGLQFPVGR+GRFLK G+Y++RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RIIPRH+QLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK +K
Sbjct: 5 GKGKGGRGDKK-AVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA) HSP 1 Score: 197 bits (500), Expect = 6.130e-63 Identity = 102/125 (81.60%), Postives = 114/125 (91.20%), Query Frame = 1
Query: 1 MTGKGKGGRG-DKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVANK 372
M GKGKGGRG + KK TS+S+KAGLQFPV R+GR+LK G+Y+ RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEELN+LLG VTIASGGVLPNIHAVLLPKK A K
Sbjct: 1 MAGKGKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAK 125
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 196 bits (498), Expect = 8.950e-63 Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVA 366
M+GKGKGGRG KK TTS S+KAGLQFPVGRIGR+L+ GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+ LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK A
Sbjct: 1 MSGKGKGGRGGKKSTTS-SAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSA 121 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1097.26.1 >prot_A-nodosum_M_contig1097.26.1 ID=prot_A-nodosum_M_contig1097.26.1|Name=mRNA_A-nodosum_M_contig1097.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=125bp MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVback to top mRNA from alignment at A-nodosum_M_contig1097:237181..237555- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1097.26.1 ID=mRNA_A-nodosum_M_contig1097.26.1|Name=mRNA_A-nodosum_M_contig1097.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:237181..237555- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1097:237181..237555- >mRNA_A-nodosum_M_contig1097.26.1 ID=mRNA_A-nodosum_M_contig1097.26.1|Name=mRNA_A-nodosum_M_contig1097.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:237181..237555- (Ascophyllum nodosum dioecious)back to top |