mRNA_A-nodosum_M_contig1097.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1097.2.1
Unique NamemRNA_A-nodosum_M_contig1097.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.590e-64
Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGHKKKANKRIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAG KK+ NKR ESYSSYIYKV KQVHP TGISKRGMSIMNSFINDVFERVAGESGKLT +NKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.130e-58
Identity = 98/116 (84.48%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGHKKKANKRIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAG K K  KR ESYSSYIYKV KQVHP TGISK+GMSIMNSFIND+FER+AGE+G+L  ++KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 8.960e-58
Identity = 99/118 (83.90%), Postives = 107/118 (90.68%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGHKKKANK--RIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKK G K K  K  RIESYS+YIYKV KQVHP TGISKRGMSIMNSFIND+FER+A E+GKL+ +NKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 181 bits (459), Expect = 4.420e-57
Identity = 95/116 (81.90%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGHKKKANKRIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAG K+  NKR+E+YSSYIYKV KQVHP TGISKRGMSIMNSFIND+FER+AGE+ +L  +NK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.010e-56
Identity = 101/118 (85.59%), Postives = 107/118 (90.68%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKA--GHKKKANKRIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA  G KKKA KR ESY SYIYKV KQVHP TGISKRGMSIMNSFINDVFER+A E+GKLT +NKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKA-KRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 179 bits (455), Expect = 1.920e-56
Identity = 95/116 (81.90%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGHKKKANKRIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAKAPKKA    K+ KR E+YSSYIYKV KQVHP TGISK+GMSIMNSFIND+FER+A E+GKL ++NKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 180 bits (457), Expect = 6.400e-55
Identity = 101/118 (85.59%), Postives = 107/118 (90.68%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKA--GHKKKANKRIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA  G KKKA KR ESY SYIYKV KQVHP TGISKRGMSIMNSFINDVFER+A E+GKLT +NKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKA-KRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 176 bits (445), Expect = 7.510e-55
Identity = 95/116 (81.90%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGHKKKANKRIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+A APKKAG K+ + KR ESYSSYIYKV KQVHP TGISK+GMSIMNSFIND+FER+A E+GKL+++NKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 173 bits (439), Expect = 5.970e-54
Identity = 94/120 (78.33%), Postives = 110/120 (91.67%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKAG---HKKKANKRIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++ AKA KKA     KK++ KR+ESYS+YIYKV KQVHP TGISK+GMSIMNSFIND+FER+AGE+GKL+++NKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.200e-53
Identity = 94/119 (78.99%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKA--GHKKKANKRIESYSSYIYKVRKQVHPVTGISKRGMSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+ +KA KK   G KK++ KR+ESYS+YIYKV KQVHP TGISK+GMSIMNSFIND+FER+AGE+GKL ++NKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   35 MAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI1.590e-6493.10Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA1.130e-5884.48Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A485K2U0_9STRA8.960e-5883.90Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU4.420e-5781.90Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJ22_9STRA1.010e-5685.59Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWR8_PHATC1.920e-5681.90Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A836CJT3_9STRA6.400e-5585.59Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U6DWX5_9STRA7.510e-5581.90Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS5.970e-5478.33Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2P1D6_9STRA1.200e-5378.99Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1097contigA-nodosum_M_contig1097:34265..34615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue2.61e-65
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size351
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866481.7984865-CDS-A-nodosum_M_contig1097:34264..346151680866481.7984865-CDS-A-nodosum_M_contig1097:34264..34615Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1097 34265..34615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1097.2.1prot_A-nodosum_M_contig1097.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1097 34265..34615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1097.2.1

>prot_A-nodosum_M_contig1097.2.1 ID=prot_A-nodosum_M_contig1097.2.1|Name=mRNA_A-nodosum_M_contig1097.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGHKKKANKRIESYSSYIYKVRKQVHPVTGISKRG
MSIMNSFINDVFERVAGESGKLTSFNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at A-nodosum_M_contig1097:34265..34615-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1097.2.1 ID=mRNA_A-nodosum_M_contig1097.2.1|Name=mRNA_A-nodosum_M_contig1097.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:34265..34615- (Ascophyllum nodosum dioecious)
ATGGCCAAGACCCCCTCAAAGAAGTCCGCCAAAGCGCCCAAGAAGGCCGG
CCACAAGAAGAAAGCCAACAAGAGGATCGAGTCCTATTCGTCTTACATTT
ACAAGGTGCGCAAACAAGTTCACCCTGTTACGGGTATCTCGAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGG
CGAGTCGGGCAAGCTCACAAGCTTTAACAAGAAAGCTACCCTGTCCTCAC
GTGAGGTGCAGACAGCTGTGCGCTTGATGCTTCCAGGAGAGCTCGCCAAG
CATGCCGTGTCTGAGGGCACGAAGGCCGTCACAAAATTCACTTCATCTTG
A
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1097:34265..34615-

>mRNA_A-nodosum_M_contig1097.2.1 ID=mRNA_A-nodosum_M_contig1097.2.1|Name=mRNA_A-nodosum_M_contig1097.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:34265..34615- (Ascophyllum nodosum dioecious)
ATGGCCAAGACCCCCTCAAAGAAGTCCGCCAAAGCGCCCAAGAAGGCCGG
CCACAAGAAGAAAGCCAACAAGAGGATCGAGTCCTATTCGTCTTACATTT
ACAAGGTGCGCAAACAAGTTCACCCTGTTACGGGTATCTCGAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGG
CGAGTCGGGCAAGCTCACAAGCTTTAACAAGAAAGCTACCCTGTCCTCAC
GTGAGGTGCAGACAGCTGTGCGCTTGATGCTTCCAGGAGAGCTCGCCAAG
CATGCCGTGTCTGAGGGCACGAAGGCCGTCACAAAATTCACTTCATCTTG
A
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