mRNA_A-nodosum_M_contig1097.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1097.12.1
Unique NamemRNA_A-nodosum_M_contig1097.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1097contigA-nodosum_M_contig1097:210557..214328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866481.746854-UTR-A-nodosum_M_contig1097:210556..2105801680866481.746854-UTR-A-nodosum_M_contig1097:210556..210580Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1097 210557..210580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866481.7597923-CDS-A-nodosum_M_contig1097:210580..2106311680866481.7597923-CDS-A-nodosum_M_contig1097:210580..210631Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1097 210581..210631 -
1680866481.7694056-CDS-A-nodosum_M_contig1097:214241..2143281680866481.7694056-CDS-A-nodosum_M_contig1097:214241..214328Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1097 214242..214328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1097.12.1prot_A-nodosum_M_contig1097.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1097 210581..214328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1097.12.1

>prot_A-nodosum_M_contig1097.12.1 ID=prot_A-nodosum_M_contig1097.12.1|Name=mRNA_A-nodosum_M_contig1097.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=46bp
VGRSGESLEAPYWRTISLVASPLASIDTILYCKLTTSEAHTFPLA*
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mRNA from alignment at A-nodosum_M_contig1097:210557..214328-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1097.12.1 ID=mRNA_A-nodosum_M_contig1097.12.1|Name=mRNA_A-nodosum_M_contig1097.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3772bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:210557..214328- (Ascophyllum nodosum dioecious)
GTCGGCAGATCCGGCGAGTCCTTGGAGGCGCCATATTGGCGAACAATCTC
ACTGGTTGCTTCGCCTCTTGCCAGCATTGACACCATAGCCGCATGGTTTA
ATGGTATACCATAATGACGAGCGTTATCCCGTGACGCATCGCGCAATGCA
CGGGTCTCGCCACGCGTCCTCCCGGGCATCTCCACGTATCCCTCGTGTTC
TAATTTGCGACTGACGCGCGGGGGGATTGGAGCCGGGGAGTTCGACGTTC
GTGTAGGCGGTGGTGTCGCTGCCGGTGCGGGAGCTGGCGGAGTGGCGACG
GGTGCAGGAGATGGCGCGGCGACGGGCACATACTGCGGCATGGGGACGTA
GATGTCCCTCGGTGGTTCTGATGGCGCGGCCCGGATCGGGGTGTTGATCC
ACGGTACTTCCGGGTGGTGCCAGGTGACGTCGCGCGAATAAGCGACCCTC
CCCGTCTCCGCATCCAGGAGCCGGTAGCAATCCCGCCCGTGATTATACCC
AAAATTTAGGAAATAACACATACGGGCCCGGGGATCCGTCTTCCGCTGTC
GCGGCACGGGGTGATAAGCGGGCTGGAGGAAGGGCAGCAGTGGCAACCGC
GGGCGGCTCCCGTAGAAAATCTCATGGGGGGAAAGCCACTCGTCGTTCAC
TGATGTGGCCGCCCTGTTATAGCACTCCGATGCCCAGAGTAGCGACTCCA
GCCAGAGGCTCGTTCCTGCCGCGTCGGTACAACCCCGTATCTCTTCCAGG
CGGATGTCCGGGTACAGCTGTGGAACTCCAAGTCGCGCCGCGTGTCCAGC
CTTAAAAGCTCGCGATATCGCGCTCTCGACGGGTCCATTCTGCTGTGGCG
TGTATGGTGCCGTAAACTCGCGACGAATTCCGAGGCCATTGCAGAAGTCC
ACGAACATACTGTTCGAGTACTCGGTGCCGTTGTCAGTGCGGAACGCGCG
TGGGACCCCCATATCTGCCACGAAGCGTTTCACGACAGAAAGAATGGCGG
CCGCGCTCTTCTCGCGCACGCCGTATGGCCGCTGTAGACGCGAAGCGCTG
TCGACGAACATCACAACGTACCGCGACCCTCCAAGAGAAGTTGGGTAAGG
CCCAGCGGTGTCGATGTGGACAAGTCCCAGCGGGTGCGTCGCTCGCCTCG
TCGCGTGATGTGGGGTAGGTGCTCGATGTCCTTCGCTCGAGAACAAGCCG
AACATGAAACTAGTTCCCCGGTCAGGCGGATCCCATGCTGTTTCGCTGTC
GCTTTCAGCACACTCGCATGGGCGTGGGCAAGGGAAACGTGCAAATGGTT
AATATCGACTTCCTTGCCATGTCTTAGTAGCCCTGGGATCAGGGCAGCCG
CTGCCAAGGGGGTTTCAATCCTGCACGCGGGCCTGGGGGTTTTTCCTATG
GGGGTTTTCTCTACGAACTGAACTTCCCCCAACACAGAACTGAGAGGGGG
AAAGGGAGTCGGTTCCAGTACTGTAACAACTCCCGGAACATTCGAATTTA
AACCAGTCGCGCACATGTTCCTGCGGGGGGGGGGGTTCTGCGACGGAGGT
GGAATGGGGTGGCCCAACTGCCTCAAAAGGTTTGTTGCGCGCATGTTTCC
TTGCCTCCGTCTTGCTCCTACAGTACCGGCGGGGAGCCGGGTGGCACGCA
AATATGATCCGCTACTGCTGCGGGGGAACGTCAGATTAGCTCCGATAATG
TGCGTTCCAGATGCGTCCGACACTATCAGATGTGTTCTCTGGACAGCGTG
CAGCGAGTACAGGTTAAACCCTAAATTTGGTACGTACGCGACATCTAGCA
ATGTGATTCTCTGATCACCCTTCCCATGGAAAATGACATCCATATTCCCG
ACATACTCTACACTGATTCTCCGACGGTCCCCGATCGTGATTGTTTCGCG
ACCGGGCGGAGGGGCCTCACATTATACATCCTTGTCCCGTCATGCGTCAT
ATGACACGACGCGCCGCTGTCGGCAATCCAAACATCATTCTCGTTGCTGC
CCGACTGCACTACAAACGCACTGTGTAGGTAGCTACCCGGTACAGTAATA
TCCCCTACCACGCTTTCACTCGGTACTGGAGACTTGCCTGGTGGCGCAAA
TTGCGTCAGGGTGGCCTGTTCGTTGAAGGAGCTCCAGGATGACTCGGACG
GAACGGGCGGTCCATGCGGGTCCGGCGGCGCGGGGGCTGACTGTGACGGC
GGAGGGCCACTTCCAAAATCGGCGTAGTTTTCATCTAAATAGGTCGCAGC
TTGCGCGCCCGTGTAGGGGTCAGGAAAACGCGTGGGGGGTACTGCACGGC
ACTCCGACAGAAAATGCCCGTGTTTACCACACCTGAAACAAACGCGTGAT
GGACCCCGTCCCACTGAATGCTGTGCGGGCTGCTGCGGCTGATGGCGCGG
CTGGTACCTCTGGTACTGCTGTTGCGGCTCCTGTTGCTGATATTGCTCGT
GCCGCTGCTGATATTGCGGCTGATGCGCGGGCTGCTGATATTGCGGCTGA
TGCGCGGGCTGCTGCTCTCTCTGATGCCGCGGCTGATGTTGCGGTTGTTG
CTGCTGATGCCACGGCTGATACTGCTGTTGTTGCGGCTGTTGCTGCTGAT
GTTGCGGCTGTTGCTGCTGATGTTGCGGCTGCCGTTGATTCGGCGGGCGA
CCTTTACCGTCGCGCTTGCCGCGTCCGCTGCCATTGTGGCCTCCACGTCC
CCCCGCTCCGCCCGCCGCTTCTGGCTTTGAAACCAGCGGCCAAGGCATGG
TTGCCGTCGGTCCCGTCCGAGCTCCTGTTAAGCTCCTCCACGCGAACGAG
ACCACCCTCCAGGTCGGCTAGAGAAAATCTGTTTTTAACGCAAAGTTCCT
CTTCTCGGGAGCATACGAGGGGGAGACCATTGAGAACTCTGCGGCTGATC
TCTTGATCGGTTACCTCGACGTCATGGTACTGTACATTGAGGGCTAGTGA
CTTTGCGCGAGCAATGTATTCTTTCATACTTTCGGCACTGTCCATACTCA
AACCTTCGAAGTTTTTCTTGGCCTGCTCTTTTGCCCGATCGCTACTGTCA
TCCTCAACCATGCTTTTCAGTATTTTCCATGCCTCTGATGGAGCTTTGGC
TCGCACCACGAGGTCTGCAATCGACCGATCCTTCTCAACAGCTTTTGTTA
GGCCGGTCCATACGGTTAGTGACTGCGCCACAATCTGTCTACCGTACTCA
ATCTCCAGCTCTCTGCGTGATTTGTCTCCAGTCAAGATAACAGGACGACT
GTGGCTAAGCGCGTCCTCCGACCGGGACGATAAAGCCCATGCGTGAAATT
GGTTCAGAAACCTAGATAGGCTACTGCGTTCCCCAGAGTACGTGGGGATC
GGGAATGTTCCCGCCTGCTGGTTTGGTGTGGGCGGTGTCGAGTTTCGCTC
GACTTGTCTTCTCAAATCTGCAAGATCACTTTCGTAGCGACTACCAGTAC
GATCGACTGCATCAAACCTTCTGTTGATTTCTTCGATCTCGAATTTCAGG
AGTTGAACGTCCTTCATTGTGCCGTCCCTGATCTCGGCCATGTCATTCTC
CAGCTGCGACAATCTATCGCCAAATGCTGTGGCTCGTGCTTGGGGACTCG
TGGCTCCATCCTTTGGGCCCGACCCTGTCGGTCTCCTCGCAGCCATACGA
ATTTTTGAGAATTCTTGAGATGGGGACTTGATGCAACACAACCCTAGCTT
TACTGCAAGCTCACCACGTCTGAAGCTCACACTTTTCCGCTAGCGTAATG
AGTTATTTCAGGGCGTGATGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1097:210557..214328-

>mRNA_A-nodosum_M_contig1097.12.1 ID=mRNA_A-nodosum_M_contig1097.12.1|Name=mRNA_A-nodosum_M_contig1097.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=138bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:210557..214328- (Ascophyllum nodosum dioecious)
GTCGGCAGATCCGGCGAGTCCTTGGAGGCGCCATATTGGCGAACAATCTC
ACTGGTTGCTTCGCCTCTTGCCAGCATTGACACCATACTTTACTGCAAGC
TCACCACGTCTGAAGCTCACACTTTTCCGCTAGCGTAA
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