mRNA_A-nodosum_M_contig1093.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1093.4.1
Unique NamemRNA_A-nodosum_M_contig1093.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1093.4.1 vs. uniprot
Match: D8LGY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGY6_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.140e-18
Identity = 37/60 (61.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:  346 SSEEVVKDEEHEITNPVEECKKWQKRYNKCIKKFAGGFVQGDPRYDRRNECLERFDDFQK 525
            S E  ++ EEHEI+NPVEECKKWQK+Y +C+KKF  G+++G+ R + R++CLERFDDFQK
Sbjct:    2 SVENDMRAEEHEISNPVEECKKWQKKYYRCVKKFGRGYMRGEARSEERDDCLERFDDFQK 61
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1093.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY6_ECTSI2.140e-1861.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1093contigA-nodosum_M_contig1093:199745..206222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1174
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionUbiquinol-cytochrome C reductase hinge domain
Ec32 orthologEc-14_001440.1
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866478.3047266-UTR-A-nodosum_M_contig1093:199744..2003061680866478.3047266-UTR-A-nodosum_M_contig1093:199744..200306Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1093 199745..200306 -
1680866478.3402705-UTR-A-nodosum_M_contig1093:205889..2062221680866478.3402705-UTR-A-nodosum_M_contig1093:205889..206222Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1093 205890..206222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866478.3141637-CDS-A-nodosum_M_contig1093:200306..2003941680866478.3141637-CDS-A-nodosum_M_contig1093:200306..200394Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1093 200307..200394 -
1680866478.324543-CDS-A-nodosum_M_contig1093:200594..2007071680866478.324543-CDS-A-nodosum_M_contig1093:200594..200707Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1093 200595..200707 -
1680866478.332247-CDS-A-nodosum_M_contig1093:205811..2058891680866478.332247-CDS-A-nodosum_M_contig1093:205811..205889Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1093 205812..205889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1093.4.1prot_A-nodosum_M_contig1093.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1093 200307..205889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1093.4.1

>prot_A-nodosum_M_contig1093.4.1 ID=prot_A-nodosum_M_contig1093.4.1|Name=mRNA_A-nodosum_M_contig1093.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
MSSGSSEEVVKDEEHEITNPVEECKKWQKRYNKCIKKFAGGFVQGDPRYD
RRNECLERFDDFQKMPPVRCRSSVINARPNHGGGKARDVYQF*
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mRNA from alignment at A-nodosum_M_contig1093:199745..206222-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1093.4.1 ID=mRNA_A-nodosum_M_contig1093.4.1|Name=mRNA_A-nodosum_M_contig1093.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6478bp|location=Sequence derived from alignment at A-nodosum_M_contig1093:199745..206222- (Ascophyllum nodosum dioecious)
AGACCCAAGTACTCGACAGTATAAACCAGTGCAGTTAGCACCCTGGCCTG
ACGTTTCCAGTTTGAGCTTCAATTTGCGGGTGAAAACCTCCATAAGCTTG
AGTTACTTATTTTGTAGGAATGAAAGTAAAGTAAAACTTCGTCCTAGACA
TATCGTACGAACGGTGTCTGTACCTATACCGAAATCGTTCCTCGCCGTGG
TTCTACACTCGACCTGTCCGAAGTTGAAGCTACGCGTCCTACATACAAAA
CCAACATTGCCTAGGTATTTTTTCATCGTGGTGCATTCCTTCATTTCTGC
AGGATAAATCTCCCGCTTGGAGACTGGGTCCCCATGTCAAGCGGTTCTTC
TGAGGAAGTTGTGAAGGACGAGGAGCACGAGATAACGAACCCTGTCGAGG
AGTGCAAGAAGGTGCGGTGCGGCAGGTTACAAGTACTCATACGTGCATCA
CTGTTTAAAGAATGTCCTTCCTTCAAGTATAACTGGATTGTGTGCAATGG
TACCGCTCTATTGTAGTTTTTACACGTTACAGAAGCTCGTAGCTTTTGCA
AAAATATATCAATATGTACGAGAAGAGAACGATGACTCACCACACCAAAC
GCTTGATGTTTACGCTTCTACTGCCGTCTGCCTCGGTGGGAGGCATCTAG
CTGTTCCTGCGTTCGCAACGTGTCCAGCGCTCAAGCTCGGTAACTTGACA
TCCCTGAAACGGGAGCAGTTATTTCACGATGTTTGTTCCAATGAAAGATG
GCCCTCCTGCTTATGTACAGAAATAAAATGGGCTCACTATGATAGCGCTA
CATCTAACTTCACGACGTACTTCTGTAGAGCCTAGAGCTATTAATACTAT
GTACTTGATGTTCGCACTGGATTTTTAAATGAAGTGCATCTAAATCTTCT
GAGCATCCCCCAGACAGGGGGGAAAAATGTCAACACGTTTGGGTGGGATC
ACAGGCTACAAAGATAAAAATATCTTGAGGGCATTTAGTCGGGTTCCCCG
ATGGTAATAACATAGGGTCAATAGCATAATGTCGGGGAGAAATCCGCCGT
TATTATTGTGTGTGTGCGTGTGTATTTTGTTTGTTTGTTTGTTTGTTTGT
TTTCTTCCCATTCATTCTGGACATCAATGGACGTACCAGCCGGGGTCACA
CAGGAGGAAGATCACACAGGATTTCTCATCCACCTTCTTTCTGCGGTGCA
TGCCTTAATTTTTCTCGCGAGAAGGATTCAAACATTCCTTTCCCTCGTCG
ACCGTGAAGTCGAATTTTGTGTACTAACGATTTAATCGTTCTCCACCCGT
TGGGCATTTTTATTTTAGTTTTTTAGTTTTTTAGTGAGAAAAATCCCGTT
TGCCGGGATCGAACTCACGTCCCAACGTGTCAGAGGGTTACGAGGTACCT
CTGAGCTACCGGGGCGACCATTTTAGTATTTATTAAATTACACATAACCG
CGCAATTCGGCTATGTCATCCTAGTCATTCTATGCCACTCGCATTGTGTG
TGTGTGTGTGTGCATTTATTAAATTGCACATAACCGCGCATTCCGGCAGT
CATCCTAGTCATCATATGTCACTCGCATTGATCCTCCCAAGGGGGGATCA
ATGATACAAAGTGTGTGTATGTGTGTTGTCATCCCATTTATTCCGGACGT
CAGATTTGTGGACGCACCAGCCGGGTCACACAGGAGGAAGGTCACACAGG
ATTTCTCCACCTTGTTGTACACTTACATCAATCGCCATGCAGGCACATCA
AGCAAAACAAAGTCAAAGGACACGATGAGCCTGGATACCGCTCAACTTTG
TTAAATTGGGTCTAGGATCGATGGGTGTCAGTATATATTACCATACTATT
AATGTTAGCCATCAAGCAAATAACAGTTACAGATTGACAAGGCAGGAGAC
AAGGTTTTGCTTTCTGATAATTATCAGGTGAATGTAACTATTAATAATAT
TAATATATAGATGCGAAGCAAGAGAAGTCATAGTATCTATGCAATGCGTT
TATGGTGCAAAAAGTAGTTAGTAATACTCAGTAGCATATACCAGGTAATA
TTCTAGGTACAAACACAAGGCTACCACAGAATTTTCTCAGAATTTTCTCT
GTGTGAAAGCGAAAGAGAGAAGGTACGTGAAGACAGGGGTAGCACGCTAT
TATATCAGTTGGAAAGGGCAAAAGGGGGTCTACATTTGTCTTGATGGTAT
TTACAGCTGACTACTGAGATTTTTTTAAGAAAAATCTGAACGCATCTAAA
CCTTCTGAGCATCCCATCAAAACGTTTAGGTGGGAACATAGGCTGTCAAG
GCAAAACCTCTTCATGGCATTTAAATCGGATTCCACGATGGTAGTAGGAG
AAACCCACCGTTATACTGTAGGCTTACATCAATCGCCATGCAGGGACACC
AAAAGTAGAGACGAAAGACACGATGAGCCTGAGCACAGCTCAATTTAGTT
GTTTTACTTTGTTTCTTACGGCCGATGGGCCTCAACGTGCTAGGTTACCA
ATACCACCTACAGCAACGTTGGTATCCTGCCTGTGGTCACGAAGGATCTT
CCCAACTCTCCCCGGTACTCGCCTTATGATTTGTTATCGCGATGCAAGTT
CAGTACTCTCACAACTCATCAACCATCCAATATTGAACAGTACATCAACA
ACTTGTTTTGATAAGCCGTTTTCAGTTTGAAGAAAAATCTGAGCGCATCT
AAACCTCTATGATGCTATTAATAGAGTATCCACCCAATCAGGGGGAGAAA
TTTTCAAAACTTTTAGGTAGGAACATAGGCTGTAAAGACAAACCTCTCTA
CGGCATCAAAACAGGCTCCCCGATGGTAGTAACATTGGATCAACAGTATA
ATGTCGGGGAGAAGCCCACCGTATACTGTACACTTACATTAATCGCCAAT
CCTGTACACCAAAACAGAGGCGTAACAGCACACAAGGAACCTTGATATAA
CTCAGTTATGTTATATAGGGTTTAGTATCGGGTTAGAGTATTGTAGGAAA
GACTGTAATATTATATTAGTCGCCTAGGTGTCAACACTATTATTTATATT
GTCATATTGTTAGTCACCAAGCAGGTTACAGATCAACAAGGAAAGACACA
AAGTGTAGACACAAAGTTTAGCCTCTGGTAATTATCATCAGGTGAATATA
TATCTCATACAGACTCAAAAGCGAAAAAATGCGGTATTATCTAGACTATT
ATATCTATGCGGCGCAGTTTTTACAAATAGTAGTGATATATGTAATACAG
TTTTTTTTATTGATTGATTGAATTCTCACATAAAGTGATGTCAAAGATCC
AGCCCGTGATCACAAGGTAGAATCATATTTTTTTCCCCATAACCGGGGGA
TGCTCAGAAGGTCTAGGTGTGCTCTGATTTTTCTTTAAACACCATTCGGA
AGAAAAGTACGTACGACTTACTCTCCATTGAAAGAGAAAGCGGCAATGGT
ACGAAAAATACACGGAGAAAGCAACATCTCCAAATAAACAAACAAGAGGA
AAAAACAAAAACAAAAAAAACGTGTGGCTATCGGGGCGCCTGCATATCGA
AGGACGATTGAACGAAGGGCCGCGGCTTCAACGAAAGCATAAAGACGAAA
ACAAAGGAAAACAAAACAAACGTAACACCAGAGAAAGACGTCATGACATC
TGCAAACCAAACGCCCGGAGGATACAAGGTCGCGCCCCTTGTGGCTAGTA
CAGGTATAAATAAGGCGAGTGTTTTCGACTCCGGGCCAGAAAAGACATAG
CGCGGGCAAATCAGAAGCCGTTGTTGACATAGCGCGGACCAATCACTTGG
CTGTTTTTGACATAGACACCAAACTTTATACGCTCCATGTAATACTAGAG
TACAGTTTGTTGTCGACAGTCATCAAACTTTATTCGCTCGATGTAATATA
ATACTAGAGTACAGCTCAAAGCTCGAATACGTGAGGAAAAATTTAGTACC
GAGCATACAACAAGCAAAACAGCTCGATTTCGACTGAGATGATACTGCGT
TCGCCTGTGTATTGCGACGCCCCTTCGAACATCTGTAAGTATAATACTGT
CTAAACGGTAGCGGTACGCTCATCTTGAGTTGCTTCACTGCTCTCGTACA
GGGTCTGCTCTAGTCTACGTTATAAATACACGGTTATACCACACCAGAAT
GTCTTGGTGAACGCGAAAGAAATAACGTGCATGCATGTCAAGAGGAACTT
AACTTAACTGTTTGCTGGATCGTCTGTTTGTCGTACAGTATGTAGTTACC
TAGTCTATACTTTAATGTTTGCCCGTAACCTACTTGTACTAATAATAATA
TTAATAATAATATAGAGCTATTAGTACAGGTAGATCAGATGCACAATAGT
CCACTCTGCGGCCCTTTAAAATTATATGACAACGTAAAGTTACTTCGGGA
AGTTAGCAGCACATTTACAAGTAAGTTATCAGTAACTTGCAGTTCATTGC
CCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGGCTATTAATTAG
TCCGTGGTGACCTGCCAAGGCAGCACCCGTTCGGAACTACCTTGAGGTTT
ACTGGCACTATGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACCCAA
TTGCGTGACCCGATAAACTCGGGAGTGAGCCGATGGTGTATGGCGGTTTT
ATATAAACAAGTGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTA
AACACCAGATTCAGCCTGAGTCATAGAATGAGTAGGCTGACGGGGGATGG
GACGGCCTAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGTGGAC
AGGGAAATACTAATTTTCCCTGTTCAGCTGACCACGAGCAGAGTATGGAT
CAACCTTACCGGGTTGATCCATACTCTGCTATAGTGATGACCGTACATAC
ATACAATACCGATTCTGGAACTGTTACTCAGACAGTTGAGGCCGCAGTTC
GGGTCCAAGAATGTCGTGACGCGGCTTGAGGAGAATTCTTCTATTAATGG
CTACTCTACTATTAATGGCTATTCTACTATTAATGGCTGGACTTGAGAAT
TTTGTGGCGATTTATGATACCTGATGGTTCGAACACAAGACGGTGTAGCG
AGGTAGCTACTAAATAACTCTGTAAAAAGGCTGTGTTAGCAAGAAGACAA
GATATGACCCGTTGACCATCGCACGGCACGGCACCTCTTCGGAGCCACGA
GAGCGGGGGTAGCAGTTGGATGATCTGCGGTTGGCCGATACATCTTCGTA
GTTCTACAGTTGCGAGGACCGCAACGCGCTAGAGAGTGTGAATCACCAAC
AACAACAACACGGATATAGTGCGGTTAGATGACAAAATAAATAAATATAT
AAAATCATGAAGCCATTGGTGAGCACCATGCACGTTTTTGTTTGTTTCGT
TGCTCATACTGTATGATATTATAATATGATATTATAATATGCCACCGATG
TACTACGCGTGCGCGCTGTACCGAATACCGGATACCGACTGTTCCAACAA
CAACTGCACGAACAGTGGCAAAAGCGATACAACAAGTGCATCAAGAAATT
TGCCGGGGGCTTCGTCCAAGGAGATCCTAGATACGACCGGAGAAATGAGT
GTCTGGAACGATTCGACGACTTCCAGAAGTGCGTCCTGGTGAGAAGATAA
CCGAAGTATACCGTGCAGCACCTCCATATCCGGAGCTGTTGCACAGACTT
GACCAACGATTAGAGATACAAGACGAGCGTTCTACAGACGCTCGCGAGGG
TTCTTTCGCGCACTTCCTCGAGTCAGCCGTTGTTCCCATCTTCCTCCCCC
TTGCTTTGCATCTCCCGTGTTCACGTAGGATGCCGCCCGTAAGATGCAGG
AGCAGCGTGATCAACGCAAGGCCAAATCATGGTGGTGGTAAAGCCCGAGA
TGTATACCAATTTTAGAGACACTTGCAAAGAAAGAAAGGATGGAGGGGGT
CCCTGTTCGCGTGGGAAACGGTCGAGAGAGGACGCTTGCTGAGCTCAGCG
TGATTTTGTCCTCGGCAGGGATCTAGGATATCCCAAGATGCTACTGGAGT
ACGCACGAGCCCGTAGGCATTCAGCCTGTGCTTCGTCGTGAGACTTGGCG
CAGGTATCTTCTCAAGGAATAAAGCGACCGCTCTACATGTTTACACCCGC
TTCTCGGGGAAAGGGAGTTAAAAGAGAGATTGGCAGCGGCGGTCGAGGGT
GCCCTTAATTGCAGCCTGTACATCCGTCGAATGTAGAGCGAAGTCGTGCG
TTTTTCAACCGAGGTAAAGGAAAAAACGTCATATATTTATTGTATTTGCA
GCCTATGATCCCACGTAAACGTTTTGACATTTTTCCGGCTGACTGGGGGA
TGCTTAGAAGGTCTAGATGCGTTCAGATTTTTCTTTTCAACAGTGTATCT
GGTGATGGAAGTTCTCGTGCACAGCATATTAGAAGTTTGTTTCCCCCGTT
GGCTCCTCAATAATCTATTTTTTCCAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1093:199745..206222-

>mRNA_A-nodosum_M_contig1093.4.1 ID=mRNA_A-nodosum_M_contig1093.4.1|Name=mRNA_A-nodosum_M_contig1093.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig1093:199745..206222- (Ascophyllum nodosum dioecious)
ATGTCAAGCGGTTCTTCTGAGGAAGTTGTGAAGGACGAGGAGCACGAGAT
AACGAACCCTGTCGAGGAGTGCAAGAAGTGGCAAAAGCGATACAACAAGT
GCATCAAGAAATTTGCCGGGGGCTTCGTCCAAGGAGATCCTAGATACGAC
CGGAGAAATGAGTGTCTGGAACGATTCGACGACTTCCAGAAGATGCCGCC
CGTAAGATGCAGGAGCAGCGTGATCAACGCAAGGCCAAATCATGGTGGTG
GTAAAGCCCGAGATGTATACCAATTTTAG
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