mRNA_A-nodosum_M_contig10906.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10906.2.1
Unique NamemRNA_A-nodosum_M_contig10906.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10906.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10906contigA-nodosum_M_contig10906:702..1247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog264202.CF0730
Preferred namepmp13
PFAMsAutotransporter,CHU_C,Calx-beta,ChlamPMP_M,Chlam_PMP,DUF11,Haemagg_act
Model size546
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.81e-06
EggNOG OGsCOG3210@1|root,COG3210@2|Bacteria
Descriptiondomain, Protein
Cds size546
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866477.4430518-CDS-A-nodosum_M_contig10906:701..12471680866477.4430518-CDS-A-nodosum_M_contig10906:701..1247Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10906 702..1247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10906.2.1prot_A-nodosum_M_contig10906.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10906 702..1247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10906.2.1

>prot_A-nodosum_M_contig10906.2.1 ID=prot_A-nodosum_M_contig10906.2.1|Name=mRNA_A-nodosum_M_contig10906.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=182bp
ENVIFSSNTAHDVGGAIYAHFSTLFFTSTTFNGNNAFDGGALLLRDSLVH
GSGFMGFISNNAGGNGGALYITSNSYVGWNMQPTVLQKKYTYPGYSSSKD
SYSYDTYYPDIEWVPVDHDGETVFENNSAGGSGGAMYASDVCEIIWTGST
SLERNTAQYGGAIYMENGVYVEANGTRNFFSN
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mRNA from alignment at A-nodosum_M_contig10906:702..1247-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10906.2.1 ID=mRNA_A-nodosum_M_contig10906.2.1|Name=mRNA_A-nodosum_M_contig10906.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=546bp|location=Sequence derived from alignment at A-nodosum_M_contig10906:702..1247- (Ascophyllum nodosum dioecious)
GAGAACGTGATATTCAGCTCCAACACCGCCCATGATGTAGGTGGTGCGAT
TTATGCTCACTTTTCAACCCTTTTTTTTACATCGACCACCTTCAATGGCA
ATAACGCATTCGACGGTGGAGCTCTCCTCCTGCGCGACTCACTCGTACAC
GGGAGTGGATTTATGGGGTTTATTAGCAACAATGCCGGTGGAAATGGAGG
AGCGCTGTACATTACCTCGAACTCTTACGTCGGCTGGAACATGCAGCCCA
CGGTCCTTCAAAAAAAATATACTTACCCCGGCTATTCGTCCAGCAAAGAT
TCGTATTCCTATGATACGTATTATCCTGATATCGAATGGGTTCCCGTGGA
TCATGATGGGGAGACAGTGTTTGAGAACAACAGCGCCGGGGGATCGGGAG
GTGCAATGTATGCCTCCGACGTTTGCGAGATAATATGGACAGGGTCCACA
TCCCTAGAACGAAACACAGCTCAGTACGGTGGTGCTATCTACATGGAAAA
CGGGGTTTATGTCGAAGCAAACGGCACGAGAAACTTTTTTTCGAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10906:702..1247-

>mRNA_A-nodosum_M_contig10906.2.1 ID=mRNA_A-nodosum_M_contig10906.2.1|Name=mRNA_A-nodosum_M_contig10906.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at A-nodosum_M_contig10906:702..1247- (Ascophyllum nodosum dioecious)
GAGAACGTGATATTCAGCTCCAACACCGCCCATGATGTAGGTGGTGCGAT
TTATGCTCACTTTTCAACCCTTTTTTTTACATCGACCACCTTCAATGGCA
ATAACGCATTCGACGGTGGAGCTCTCCTCCTGCGCGACTCACTCGTACAC
GGGAGTGGATTTATGGGGTTTATTAGCAACAATGCCGGTGGAAATGGAGG
AGCGCTGTACATTACCTCGAACTCTTACGTCGGCTGGAACATGCAGCCCA
CGGTCCTTCAAAAAAAATATACTTACCCCGGCTATTCGTCCAGCAAAGAT
TCGTATTCCTATGATACGTATTATCCTGATATCGAATGGGTTCCCGTGGA
TCATGATGGGGAGACAGTGTTTGAGAACAACAGCGCCGGGGGATCGGGAG
GTGCAATGTATGCCTCCGACGTTTGCGAGATAATATGGACAGGGTCCACA
TCCCTAGAACGAAACACAGCTCAGTACGGTGGTGCTATCTACATGGAAAA
CGGGGTTTATGTCGAAGCAAACGGCACGAGAAACTTTTTTTCGAAC
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