mRNA_A-nodosum_M_contig10900.3.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10900.3.2
Unique NamemRNA_A-nodosum_M_contig10900.3.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10900.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10900contigA-nodosum_M_contig10900:2512..3826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size188
Hectar predicted targeting categoryother localisation
Exons3
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866477.2370868-CDS-A-nodosum_M_contig10900:2511..26191680866477.2370868-CDS-A-nodosum_M_contig10900:2511..2619Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10900 2512..2619 -
1680866477.2453928-CDS-A-nodosum_M_contig10900:2818..28751680866477.2453928-CDS-A-nodosum_M_contig10900:2818..2875Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10900 2819..2875 -
1680866477.2552407-CDS-A-nodosum_M_contig10900:3805..38261680866477.2552407-CDS-A-nodosum_M_contig10900:3805..3826Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10900 3806..3826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10900.3.2prot_A-nodosum_M_contig10900.3.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10900 2512..3826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10900.3.2

>prot_A-nodosum_M_contig10900.3.2 ID=prot_A-nodosum_M_contig10900.3.2|Name=mRNA_A-nodosum_M_contig10900.3.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=62bp
SQEQIPRGRRGHCLVNPKGASTGPAQAFHGPRGQSRLPLLVKKACHFPSH
QATWRHDFSCR*
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mRNA from alignment at A-nodosum_M_contig10900:2512..3826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10900.3.2 ID=mRNA_A-nodosum_M_contig10900.3.2|Name=mRNA_A-nodosum_M_contig10900.3.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1315bp|location=Sequence derived from alignment at A-nodosum_M_contig10900:2512..3826- (Ascophyllum nodosum dioecious)
TCACAGGAGCAGATTCCAAGGGTGAGGTTTGGTTTTCTAGTACCGAGTGC
TACGGGCAGTCGATCAGAGTGAACCATCGTACGTTTGTACCTTGAAATGA
CTACGCTTACGGTTAGGTTAGGCTCGACTCTCACTCCTATTAATAGTAAT
ACTGTAAATGGTTCAACTCTATCTACTGTAGAGCCTATGAATGGTTCGCG
AACGGGCGGCTATGGACCAGGACATGCAGCTAAATTAATTTATCAATCGG
CAATCCCGCGACGTCTTTTTAAGGTCTCGTACAGTAGTGCGTTCTCAATG
CAATGATTCGTGTAGAGCCTATGAATGGTTCGCGAACGGGCGGCTATGGA
CCAGGACATGCAGCTAAATTATTTCATCAATCGGCAATCCCGCGACGTCT
TTTTAAGGTCTCGTACAGTAGTGCGGTCTCAAAGCAATGATTCGAAATCC
TTCGTCAGAAACATTACCAGTGCTGCGGATTTGTCAAAAATGCTATTTTG
AGACACATCAGAGGTGTCGCCTTTATAGAGTATAGCCCCGGAAACCCGAA
TGAACTGTAGCTGGCCGGGGTTAGGGATAGGAAGGGTAGGGTGTGGCTGT
GCCTAACCTCAAATGGCCGTACAGTGCAGTACATAAATAGTTCCAACACC
AAAGGTCACGCCTCATTTTTTTTCTTTCGTTCTTCTTGGGCTCCTGCTCT
GAAAACATGTCCATGAGATCTCGGCGGGGGGTTCCCGCAACCGATCTCTC
GAAATATAATTGCTCGTCATAAGATATTAATGTAACAAATCTACTTGCTT
GTACCTGGTGAAAGCCGCGAATGCCTTTTACGGTTTGCTTGTCACAACGC
TACTTTTGCATCTAATTAAAATACTACTGCTATAGCGCACACACCCACGA
CCCTTGACGTGGAATCAAGAACAGCTACCCTCTTATGTAAATCATATGCA
GGGACGCCGAGGACACTGCTTGGTGAACCCTAAGGGCGCGTCCACGGGCC
CTGCTCAGGTGGCGTTGTACCCACTTTATAATTCTGTCAAAGTGCCATGT
GTTATGCGACTCACGACAACGTACTTGATCGCCTCACATCCGCCGCCCCT
CCGCTGGAAGTAAGCCAGACAACGATATATTGTTTTGTGGTATTGTAAAA
TTGCTTTTTTTGCTGAAGAATCGGGCTATTATATATATCTCGCCCATTGT
CATGAAGGCGTTTCATGGGCCGCGTGGGCAATCACGACTGCCTCTCCTTG
TCAAGAAGGCGTGCCATTTTCCCTCGCATCAAGCAACATGGCGGCATGAC
TTTTCTTGCCGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10900:2512..3826-

>mRNA_A-nodosum_M_contig10900.3.2 ID=mRNA_A-nodosum_M_contig10900.3.2|Name=mRNA_A-nodosum_M_contig10900.3.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=186bp|location=Sequence derived from alignment at A-nodosum_M_contig10900:2512..3826- (Ascophyllum nodosum dioecious)
TCACAGGAGCAGATTCCAAGGGGACGCCGAGGACACTGCTTGGTGAACCC
TAAGGGCGCGTCCACGGGCCCTGCTCAGGCGTTTCATGGGCCGCGTGGGC
AATCACGACTGCCTCTCCTTGTCAAGAAGGCGTGCCATTTTCCCTCGCAT
CAAGCAACATGGCGGCATGACTTTTCTTGCCGGTGA
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