mRNA_A-nodosum_M_contig1086.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1086.6.1
Unique NamemRNA_A-nodosum_M_contig1086.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 IEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN 123
            IEAT CQAERNFSAL HLIG LR  ML SKVERM+FIRLN
Sbjct:  763 IEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLN 802
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BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 IEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN 123
            IEAT CQAERNFSAL HLIG LR  ML SKVERM+FIRLN
Sbjct:  568 IEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLN 607
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BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-10
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 IEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN 123
            IEAT CQAERNFSAL HLIG LR  MLA KVERM+ IRLN
Sbjct:  446 IEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLN 485
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BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.800e-10
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 IEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN 123
            IEAT CQAERNFSAL HLIGD R  ML+ +VERM+ +RLN
Sbjct:  181 IEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220
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BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.450e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 IEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN 123
            IEA+ CQAERNFSAL+HLIG LR  ML+ KVERM+ IRLN
Sbjct:  186 IEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLN 225
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BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.770e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 IEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN 123
            IEA+ CQAERNFSAL+HLIG LR  ML+ KVERM+ IRLN
Sbjct:  751 IEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLN 790
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BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.800e-10
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 IEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN 123
            IEAT CQAERNFSAL HLIG+LR  ML  +VERM+ IRLN
Sbjct:  460 IEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLN 499
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BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-9
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 IEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN 123
            IEAT CQAERNFSAL HLIGDL   ML+ +VERM+ +RLN
Sbjct:  564 IEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLN 603
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BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.720e-9
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 IEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN 123
            IEAT CQAERNFSA +HLIG LR ++L SK ER +FIRLN
Sbjct:  357 IEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLN 396
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1086.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JGG8_9PHAE1.340e-1182.50Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE1.340e-1182.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.200e-1080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE1.800e-1072.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJT6_9PHAE5.450e-1075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE7.770e-1075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE7.800e-1075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.450e-972.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE3.720e-972.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1086contigA-nodosum_M_contig1086:168858..168980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size123
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866472.1048834-CDS-A-nodosum_M_contig1086:168857..1689801680866472.1048834-CDS-A-nodosum_M_contig1086:168857..168980Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1086 168858..168980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1086.6.1prot_A-nodosum_M_contig1086.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1086 168858..168980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1086.6.1

>prot_A-nodosum_M_contig1086.6.1 ID=prot_A-nodosum_M_contig1086.6.1|Name=mRNA_A-nodosum_M_contig1086.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=41bp
WIEATRCQAERNFSALTHLIGDLRSRMLASKVERMVFIRLN
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mRNA from alignment at A-nodosum_M_contig1086:168858..168980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1086.6.1 ID=mRNA_A-nodosum_M_contig1086.6.1|Name=mRNA_A-nodosum_M_contig1086.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at A-nodosum_M_contig1086:168858..168980+ (Ascophyllum nodosum dioecious)
TGGATCGAGGCCACCAGATGTCAGGCCGAGCGAAATTTTTCAGCGCTCAC
CCACCTCATTGGTGATCTGCGCAGTAGGATGCTTGCAAGTAAGGTCGAGC
GCATGGTGTTCATTCGGCTTAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1086:168858..168980+

>mRNA_A-nodosum_M_contig1086.6.1 ID=mRNA_A-nodosum_M_contig1086.6.1|Name=mRNA_A-nodosum_M_contig1086.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=123bp|location=Sequence derived from alignment at A-nodosum_M_contig1086:168858..168980+ (Ascophyllum nodosum dioecious)
TGGATCGAGGCCACCAGATGTCAGGCCGAGCGAAATTTTTCAGCGCTCAC
CCACCTCATTGGTGATCTGCGCAGTAGGATGCTTGCAAGTAAGGTCGAGC
GCATGGTGTTCATTCGGCTTAAC
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