mRNA_A-nodosum_M_contig1085.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1085.11.1
Unique NamemRNA_A-nodosum_M_contig1085.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1085.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1085contigA-nodosum_M_contig1085:188886..189580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size695
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.4586277-UTR-A-nodosum_M_contig1085:188885..1888961680866471.4586277-UTR-A-nodosum_M_contig1085:188885..188896Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1085 188886..188896 +
1680866471.483329-UTR-A-nodosum_M_contig1085:189415..1895801680866471.483329-UTR-A-nodosum_M_contig1085:189415..189580Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1085 189416..189580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.4702938-CDS-A-nodosum_M_contig1085:188896..1894151680866471.4702938-CDS-A-nodosum_M_contig1085:188896..189415Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1085 188897..189415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1085.11.1prot_A-nodosum_M_contig1085.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1085 188897..189415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1085.11.1

>prot_A-nodosum_M_contig1085.11.1 ID=prot_A-nodosum_M_contig1085.11.1|Name=mRNA_A-nodosum_M_contig1085.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=173bp
MTTVHEHEYFKMMRAREDRIRTFLQLELEACLEEVTWSIRCHNCEVLGCP
QEEFPARLLPTLPPSYEDNLQSTLIMAQKGIFPESLKMILKLEYQLPVLR
PVPEISVQPDSVIEEHRAGESSTASECDPSPRRAAVVTRSEEPGTPPHSP
VISTGSGPEGEFSRLKPVRMGF*
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mRNA from alignment at A-nodosum_M_contig1085:188886..189580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1085.11.1 ID=mRNA_A-nodosum_M_contig1085.11.1|Name=mRNA_A-nodosum_M_contig1085.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=695bp|location=Sequence derived from alignment at A-nodosum_M_contig1085:188886..189580+ (Ascophyllum nodosum dioecious)
GATTTTTGAAAATGACGACTGTTCACGAGCACGAGTACTTCAAAATGATG
CGGGCGCGTGAAGACAGGATAAGAACCTTCTTGCAACTCGAGCTCGAAGC
TTGCTTGGAAGAGGTTACTTGGTCGATAAGATGTCATAACTGCGAGGTTC
TCGGCTGCCCGCAGGAGGAATTCCCGGCGAGGCTTTTGCCTACCCTTCCG
CCGAGCTACGAAGATAATCTCCAGAGTACATTGATCATGGCACAAAAAGG
TATATTTCCTGAATCTTTAAAAATGATCTTGAAATTAGAGTATCAGCTTC
CTGTACTTCGTCCAGTACCCGAAATCTCAGTGCAACCCGATAGTGTGATA
GAGGAACACCGGGCCGGAGAGAGCAGCACGGCGTCAGAGTGCGATCCATC
GCCGCGACGCGCCGCGGTCGTTACGAGGTCAGAGGAACCCGGAACGCCGC
CGCACTCGCCCGTGATTAGTACGGGGTCAGGACCCGAGGGAGAATTTTCT
CGTTTGAAGCCAGTACGGATGGGTTTTTGAGTTCAAATTGCACAAGCCTG
GAGCAGGAGTATATTCTGCTGCAAGTTCAACCAGAAGTCGGGATGGACGA
CAGAAACAACGCAAACACTTCACAAGCCGCCACCCGCGAGGAGTCTGCGA
GACTACTAATTGGCCAGCAGCAAGGGATGAAAGCGTGGTCAACCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1085:188886..189580+

>mRNA_A-nodosum_M_contig1085.11.1 ID=mRNA_A-nodosum_M_contig1085.11.1|Name=mRNA_A-nodosum_M_contig1085.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=519bp|location=Sequence derived from alignment at A-nodosum_M_contig1085:188886..189580+ (Ascophyllum nodosum dioecious)
ATGACGACTGTTCACGAGCACGAGTACTTCAAAATGATGCGGGCGCGTGA
AGACAGGATAAGAACCTTCTTGCAACTCGAGCTCGAAGCTTGCTTGGAAG
AGGTTACTTGGTCGATAAGATGTCATAACTGCGAGGTTCTCGGCTGCCCG
CAGGAGGAATTCCCGGCGAGGCTTTTGCCTACCCTTCCGCCGAGCTACGA
AGATAATCTCCAGAGTACATTGATCATGGCACAAAAAGGTATATTTCCTG
AATCTTTAAAAATGATCTTGAAATTAGAGTATCAGCTTCCTGTACTTCGT
CCAGTACCCGAAATCTCAGTGCAACCCGATAGTGTGATAGAGGAACACCG
GGCCGGAGAGAGCAGCACGGCGTCAGAGTGCGATCCATCGCCGCGACGCG
CCGCGGTCGTTACGAGGTCAGAGGAACCCGGAACGCCGCCGCACTCGCCC
GTGATTAGTACGGGGTCAGGACCCGAGGGAGAATTTTCTCGTTTGAAGCC
AGTACGGATGGGTTTTTGA
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