mRNA_A-nodosum_M_contig1085.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1085.1.1
Unique NamemRNA_A-nodosum_M_contig1085.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5KKD1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.860e-7
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:   44 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSLQYNGVAERGLGLIEEAAMAARIQAKVLF 105
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.780e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:  541 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLF 602
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.780e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:  311 IVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLF 372
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.780e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:  517 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLF 578
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5L6C0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.380e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:   44 IVRSDNGGECFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLF 105
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.400e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:  378 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLF 439
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.420e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:  256 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLF 317
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.420e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:   44 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLF 105
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.430e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:  790 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLF 851
[Close]
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.430e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = -2 
Query:   13 IIRTDDAPQLKAGKFDEICRKLHIKREF------KLNGVAERGLTLIEKVAKASAYQAKVSF 180
            I+R+D+  +   G+F  +C +L IK+EF      + NGVAERGL LIE+ A A+  QAKV F
Sbjct:  497 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLF 558
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1085.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KKD1_9PHAE8.860e-746.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE1.780e-646.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE1.780e-646.77Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JH25_9PHAE1.780e-646.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6C0_9PHAE2.380e-646.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE2.400e-646.77Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L3Y0_9PHAE2.420e-646.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE2.420e-646.77Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JBA7_9PHAE2.430e-646.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE2.430e-646.77Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1085contigA-nodosum_M_contig1085:72596..72794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size182
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.0633516-CDS-A-nodosum_M_contig1085:72595..726811680866471.0633516-CDS-A-nodosum_M_contig1085:72595..72681Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1085 72596..72681 -
1680866471.1851785-CDS-A-nodosum_M_contig1085:72699..727361680866471.1851785-CDS-A-nodosum_M_contig1085:72699..72736Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1085 72700..72736 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.1997674-UTR-A-nodosum_M_contig1085:72736..727941680866471.1997674-UTR-A-nodosum_M_contig1085:72736..72794Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1085 72737..72794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1085.1.1prot_A-nodosum_M_contig1085.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1085 72596..72736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1085.1.1

>prot_A-nodosum_M_contig1085.1.1 ID=prot_A-nodosum_M_contig1085.1.1|Name=mRNA_A-nodosum_M_contig1085.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=41bp
MSVRPRSATPFSLNSLLMCSFLQISSNLPAFNWGASSVRMI
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mRNA from alignment at A-nodosum_M_contig1085:72596..72794-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1085.1.1 ID=mRNA_A-nodosum_M_contig1085.1.1|Name=mRNA_A-nodosum_M_contig1085.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=199bp|location=Sequence derived from alignment at A-nodosum_M_contig1085:72596..72794- (Ascophyllum nodosum dioecious)
GTCCATGCCGACAAACGACACTTTCGCCTGGTAAGCAGACGCCTTCGCTA
CTTTCTCGATGAGCGTTAGACCACGTTCTGCTACTCCGTTCAGCTGCGGC
GTATTCGCAGAAGTAAATTCTCTTTTGATGTGTAGCTTCCTACAGATCTC
GTCAAATTTGCCTGCCTTCAACTGGGGCGCGTCATCAGTGCGAATGATT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1085:72596..72794-

>mRNA_A-nodosum_M_contig1085.1.1 ID=mRNA_A-nodosum_M_contig1085.1.1|Name=mRNA_A-nodosum_M_contig1085.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=123bp|location=Sequence derived from alignment at A-nodosum_M_contig1085:72596..72794- (Ascophyllum nodosum dioecious)
ATGAGCGTTAGACCACGTTCTGCTACTCCGTTCAGCTTAAATTCTCTTTT
GATGTGTAGCTTCCTACAGATCTCGTCAAATTTGCCTGCCTTCAACTGGG
GCGCGTCATCAGTGCGAATGATT
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