mRNA_A-nodosum_M_contig10846.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10846.2.1
Unique NamemRNA_A-nodosum_M_contig10846.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10846.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10846contigA-nodosum_M_contig10846:10389..11086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLF6
PFAMsMULE
Model size523
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.62e-10
EggNOG OGs2CMGX@1|root,2QQB8@2759|Eukaryota
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.0138812-CDS-A-nodosum_M_contig10846:10388..107301680866471.0138812-CDS-A-nodosum_M_contig10846:10388..10730Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10846 10389..10730 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.0257065-UTR-A-nodosum_M_contig10846:10730..108171680866471.0257065-UTR-A-nodosum_M_contig10846:10730..10817Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10846 10731..10817 -
1680866471.035807-UTR-A-nodosum_M_contig10846:10992..110861680866471.035807-UTR-A-nodosum_M_contig10846:10992..11086Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10846 10993..11086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10846.2.1prot_A-nodosum_M_contig10846.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10846 10389..10730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10846.2.1

>prot_A-nodosum_M_contig10846.2.1 ID=prot_A-nodosum_M_contig10846.2.1|Name=mRNA_A-nodosum_M_contig10846.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp
MAKQADNHVDVYCQVSDEAVVDDYTDTVMFGATLLLSFYKLVGHVSIDVM
VKVVYTFNESKSSHSFVIGPIGFQLRSCLQALGCGLCSGSDNFQYFSRAV
TYSRRYLSGAGAA*
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mRNA from alignment at A-nodosum_M_contig10846:10389..11086-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10846.2.1 ID=mRNA_A-nodosum_M_contig10846.2.1|Name=mRNA_A-nodosum_M_contig10846.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=698bp|location=Sequence derived from alignment at A-nodosum_M_contig10846:10389..11086- (Ascophyllum nodosum dioecious)
GTTCGGTGTGATGAAGAGCAAGATGACCCGCTGAACTCAGTAGTGCCCAT
TAGGAGAGCTTGACTGAGTTGGTGCGAGCTCCTACGCAACAAATGTGAGG
TTGAAATTGACGTGTTAACGATGTATACGCTGTATTTTTCAACGGATTCA
GTGAACACGACAGCAGCTGGTGAAAGTTGCGTCCATCCAAGGCATCCACC
GTTTTTCTCCGTCTATTTCATCATTTCCTCCTTCCAAATCCCCTTTATGA
TGGCAATCGTTGCTCCCAGGAACTGATTGCCGAAAGCCCCGCGAGTGCCA
CCTACGCCACTGTCACGCTTTCGTCGGGTGCAGACGCCGCGAGCTTCCTT
GGAGGCATGGCAAAGCAGGCAGACAATCACGTAGACGTGTACTGTCAGGT
TTCGGACGAGGCTGTGGTAGATGATTACACTGACACGGTTATGTTCGGTG
CAACATTGTTGCTCTCGTTTTACAAGCTCGTTGGACATGTGTCAATCGAT
GTGATGGTGAAAGTGGTGTACACGTTCAATGAGTCAAAATCCAGCCATAG
TTTTGTCATCGGGCCCATTGGTTTCCAACTGCGTAGCTGCTTGCAGGCTT
TAGGATGCGGGCTATGTTCGGGAAGCGATAACTTCCAGTACTTTTCCAGA
GCGGTGACGTACTCACGTAGATACTTATCGGGAGCGGGTGCGGCGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10846:10389..11086-

>mRNA_A-nodosum_M_contig10846.2.1 ID=mRNA_A-nodosum_M_contig10846.2.1|Name=mRNA_A-nodosum_M_contig10846.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig10846:10389..11086- (Ascophyllum nodosum dioecious)
ATGGCAAAGCAGGCAGACAATCACGTAGACGTGTACTGTCAGGTTTCGGA
CGAGGCTGTGGTAGATGATTACACTGACACGGTTATGTTCGGTGCAACAT
TGTTGCTCTCGTTTTACAAGCTCGTTGGACATGTGTCAATCGATGTGATG
GTGAAAGTGGTGTACACGTTCAATGAGTCAAAATCCAGCCATAGTTTTGT
CATCGGGCCCATTGGTTTCCAACTGCGTAGCTGCTTGCAGGCTTTAGGAT
GCGGGCTATGTTCGGGAAGCGATAACTTCCAGTACTTTTCCAGAGCGGTG
ACGTACTCACGTAGATACTTATCGGGAGCGGGTGCGGCGTAG
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