mRNA_A-nodosum_M_contig10830.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10830.2.1
Unique NamemRNA_A-nodosum_M_contig10830.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10830.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10830contigA-nodosum_M_contig10830:1690..7049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size199
Hectar predicted targeting categoryother localisation
Exons3
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866469.305922-CDS-A-nodosum_M_contig10830:1689..17651680866469.305922-CDS-A-nodosum_M_contig10830:1689..1765Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10830 1690..1765 -
1680866469.3152504-CDS-A-nodosum_M_contig10830:2098..21321680866469.3152504-CDS-A-nodosum_M_contig10830:2098..2132Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10830 2099..2132 -
1680866469.3805926-CDS-A-nodosum_M_contig10830:6961..70491680866469.3805926-CDS-A-nodosum_M_contig10830:6961..7049Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10830 6962..7049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10830.2.1prot_A-nodosum_M_contig10830.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10830 1690..7049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10830.2.1

>prot_A-nodosum_M_contig10830.2.1 ID=prot_A-nodosum_M_contig10830.2.1|Name=mRNA_A-nodosum_M_contig10830.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=66bp
MASVSACSDKGSPGRFASALPGQEEQQQHTQPGGKNVKTFSMCGRCTLRV
ATPFPSHTSRSPKRSG
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mRNA from alignment at A-nodosum_M_contig10830:1690..7049-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10830.2.1 ID=mRNA_A-nodosum_M_contig10830.2.1|Name=mRNA_A-nodosum_M_contig10830.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5360bp|location=Sequence derived from alignment at A-nodosum_M_contig10830:1690..7049- (Ascophyllum nodosum dioecious)
ATGGCTTCCGTCTCTGCGTGCTCCGATAAAGGGTCGCCGGGGCGATTCGC
TTCTGCCTTGCCCGGTCAAGAGGAGCAGCAGCAGCACAGCGTAACCGATG
GAGGCGGCTTGAGTGCGCTGCTTGAGCGGTCTTTCATCGGCATGTGAGGT
ATGCATGTATATGTCAAGTACTTTGTATTGGTATGTTTTTGGTGTAATTC
AGACAGGATGATTAGAGTCATAATAGGCTAAAATGAAGTGATGTACACTG
TCTGAAACGAGGAGAGGGATCCAAGCGTTGAAAGCGCCAGTGAGAGGGTT
CGATCGTCGAGGAAGGCGTGTGTAGAAGCTTTGGTTGGGTCTCCTCTCTC
CTGGTCTCTCCTTGATTCTTGCTCGAGAGTTTGGGATTTCTCCTGATTTC
CGCGGCGGCGTCCATTTATTTATTTAAAACCACCATACGCTATCGAGTCA
GTCCCGAGTTTATAGGGTCGCGCAGTTACCGATGACGTTCACTGCCGAGA
GTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGAGCT
GCCTTGGCAGGTCACTATGGACCGATTAATATACGCCAATCTGTCGTTCA
TCACAGGTTGCAAGCACGGTGCTCGTCTGGGAACGGGATGGTTTGCACCG
CTTTTATTTGCGCCGTTACCGGGTGCTCCAGGACCCTCAACACAAGCGCA
TGCCAGCTTGGAGTCACCGGCATGTGAGATATTGTAAAATGTTCGCACTG
TGAAAGCCCGCCTAGCACACTACCCTAAACCAACTAACCTTGTTGCGACT
GAGAAATTCCGTGGGTCTTTTTTTCAACTTCCCTGTATCTTTAAGGCTGT
AGTAAACACAGTAGGAGGTTTGCTGGCCTCGAGGCGTGTTTTTTGCTGGT
TACCGTTCGTTTTTTTTTGTTCCTAATCGACAAACTCAGACGAAAGCACC
CCTTTAAACACGCGAATAAAAAAAACTCGCGAGGATTGCTGCATCGTACA
AGTAACTTGTAAGACAATTGCGTTCAGATTTTTCCAAACACATTCTGAAG
TAAGAATACCCTGGCACAGAGCAAGGAGTCGCGTGAGTTACACACCCACC
GAACCATAGCAGATGGGGAAACGAAATCCCCGAAGCGTGCCCGCAACAAC
CCCAAAGTGCCCCGATAACAGGCGGGAGTTGAGGGTACACGCTACAGTAT
ATACGTATGCATGTGTTGTCATCACATATAATAGCAGAGTACAAGTCAAC
CGCGATAGGTTGCCAATCCTGCCCATGGTCAGCTGAACAGGGAAATTTTT
CCTTGCCCCCGTTCGCGCCTGAGAACTTGGTTTCACGAGACAGGTTTGGC
TGTACCGTCTCGTGTTAGCCTGCTCATTCTCTATACAAACGCTGAATCTG
GTGCTTACTCACGGTATTCCTCCCGAGTTCCGCGGCGGCGTCCATATATT
TTTGCCAGCACCACACACCATCGGGTCAGTCCCGAGCTTATCGGGTCACG
CAATTGCGTACCGATTGCGTTCACTGCGACGAGTCCGTTGGCACAGGGCC
AGTAGTCCTCAAGGTAGTTCGGGTGACGGGTGCTGCCTTTGCATCACCGC
GGACCAAATGCTATTGTGCTCCTCTCTTTTCCCACACCCACTATTGGTAC
ACAGTGTGTACGTTCAAATTATCGGGAGTATACCAAAATATTAGTACTGC
TGTAGTCTAGTGCTGTACTGTTTTGTGGAACTATTTTTTCCAACCCCGAC
TTAGTCTGTAGTCTACACGTGTAAAAAGTTCAGTGCACACGATACAGTAT
CATCATATATGTTGGATTTCAAAACATAGTTATTATTGCTGCACTGCCGA
GAGTCCGTTGGCACAGGGCCAGTAGTCCTCAAGGCAGTTCGGGTGACGGG
TGCTGCCTTTGCATCACCGCGGACCAAATGCTATTGTGCTCCTCTCTTTT
CCCACACCCACTATTGGTACACAGTGTGTACGTTCAAATTATCGGGAGTA
TACCAAAATATTAGTACTGCTGTAGTCTAGTGCTGTACTGTTTTGTGGAA
CTATTTCTTCCAACCCCCGACTTAGTCTGTAGTCTACACGTGTAAAAAGT
TCAGTGCACACGATACAGTATCATCATATATGTTGGATTTCAAAACATAG
TTATTATTGCTGCACTGCCGAGAGTCCGTTGGCACAGGGCCAGTAGTCCT
CAAGGCAGTTCGGGTGACGGGTGCTGCCTTTGCATCACCGCGGACCAAAT
GCTATTGTGCTCTCTCTTTTCCCACACCCACTATTGGTACACAGTGTGTA
CGTTCAAATTATCGGGAGTATACCAAAATATTAGTACTGCTGTAGTCTAG
TGCTGTACTGTTTTGTGGAACTATTTCTTCCAACCCCCGACTTAGTCTGT
AGTCTACACGTGTAAAAAGTTCAGTGCACACGATACAGTATCATCATATA
TGTTGGATTTCAAAACATAGTTATTATTGCTGCACTGCCGAGAGTCCGTT
GGCACAGGGCCAGTAGTCCTCAAGGCAGTTCGGGTGACGGGTGCTGCCTT
TGCATCACCGCGGACCAAATGCTATTGTGCTCCTCTCTTTTCCCACACCC
ACTATTGGTACACAGTGTGTACGTTCAAATTATCGGGAGTATACAAAAAA
AAAACGATTCCACAAAACAACTGTTGTGGTACAGCAGTACTAATATTTTG
GTATACTCCCGATAATTTGAAAAATACTCACTGTATTTTCAAATTATCGG
GAGTATATAAAAATAGTAGCACTGCTGCTGTAGTCGTGATGTACTGTTTT
TAAAGAATTGTTTTTCCCCCCAACTTATAGTCTGTAGTCTATACGTCATG
TAAAAAGTTCAGTGCACACGGTACTCCTGTACATATTAAAACTAGTGTGT
TAATAGTGAAAAAAAGGGGGTTTTGGTACATGGGAAAACTCAAAATTTGG
TTTGGGAGAGTTCAACAAATCGCATAAAGCAACACTAAATGACTACATCT
AGATGTAATCTATCTCTCTCCAACGAGCGCAAGCGTTTTCAAGAGATGAT
TGCCTCGGTTTGGCGCGTCGATCGGGATGCATTCGGATGTAATCAGTGGC
CTATATTCCACATGCGCCAGCATATTCAGAAAAATGCAAACCGTGTCTCC
TGTGCGGCATGTTTGGAGCTCGTTCAAATTCAGACACAGACCATAACATC
TCAAGAAAGGAATGCGTCACTGTTGTGGATGCCTGGGGAGTAGATGGGGA
TCGCGAGCGCTGTTCGGATGGTGGTATCGCGTAATGCGGCGCAATTGCTT
CTACCGTACCAGTAGGGTTAATTGAGACTCTACTGGATCACTTGGATGAG
CTTGGAGCCACGGTTAAAACACACCTGCGACGACGCTCCCGAAGCAGACT
CCCCTTTATATCGCAAAGGCTACAATATTCTGCCTCAACCTTATAATTTC
TTCAACCCTCCGAGCCACACCAGGACCGCTGGAGTCTCGTGCAAGACCTC
CCTCGAATTTGGGGGATGATCTGAAGGCTGATACTTCAACCTTCGAATAC
GACCGAACCAGGGTATGCCTAAGCGTAAAAACTTCAAATGACGAGCCCTC
TCATGCACCTCTACACGCACGCACCTTGAGGGGCGTCGCTCTGTCGAGTT
GGTGAAGCTCTCTTTGAAGGCTGTCCGCGCAAGCCGCGCGTAGGGGTTTC
ATGGGCCTTATGGAGGCTCTCAATTGGTACTGACGTTGTACCGCATATTT
TGTTTCTGTTTTCAAATGTGTAACCGTTTACCTGAAATAAATAAAAACGG
GGATGCGGGGATATTTCCTGTTTACTACAGCCTTAAGATTGTGTATGCAG
TGGACTGCCACCAGTAATACGGAAAACACAGAAATATTAATGTAATTAAT
TGCTGTACTACTGTATTGTACTGTTGTACACTACTGTCATAAATAAAGTA
TAACAATAGTTAATTGTACTGTGCTGTATATACTGTCGACCCAATGTTAC
TACCATCGGGGAACCCTTTTAAATGCCACGAAGAGGTTTTGTATTTGCAG
CCTATGATCCCACCTAAACGTTTTGATATTTTCCCCCTGACTGGGGATGC
TCATAAGGTCTAGGCGCGTTCAGATTTTTATTTAAACAATTTTTCGCCTG
CGTTTGCGCATCAGGAAAAAACGATACTTACCTAACGCGAAGGCCGACAG
CATCGCTGCATTTCTGAGAGACCTTGCAAGCCGATGGGAGATGCAGCCGG
ATTTATGTGAGATACACAGCACTGCCCACCAAGCAGGTGAGTCAGGTTAA
AGAACATGGCGATTAATGTAAATGTACAGTAGAACGGTGGGCTTCTCCCG
AGATTATACTGTTGACCCAATGTTATCTGCATCGGGGAACCTGTTTAAAT
GCCATGAAGAGGTTTTGTATTTGCAGCCTTTGATCCCACCTAAACGTTTT
GACATTTTTTCCCCCATAACCGGGGGATGCTCAGAAGGTCTAGGTGTACC
TCTGATTTTTCTTTAAACATGCGTCTAGTCTATACTGTAGGCCGTTGACA
CGAAAAAAAACAATTGGTTCTAGTCTGCATCATACGAGACGCACGAGACG
AGTGTGTGATGCGGACCAACTCGACATCTCACGTAGCCCAGTTGGCTTTC
ACGTTTTTTTTTGTTGTTGATATTCTGATAACGCAGCGATGGTAAGAAAC
AGTAGTTCAATGCACAACAGCAGCAGAGTCTGGTAGGAGGTGAGATCCAT
AGCAGCGGACTGACTCTACTGTACACGACAAGTGCGTTTAGGAGGGGACT
GTAAAATAGTCGCTCGTTGAGTTTTTTTTATATATGTTGTATGCTAGTTT
TCCGAGGCCTGTCTTATTGCATGAGTTTTTTATAAAGAAAAATCAGAACG
CGCCTAGACCTTCTGAGCCCAGCCAGGGGGGAAAAATGTCAAAACGTTTA
GGTGGGATCAAAGGTTGCAAATACAAAAACATCTTCATGGCATTTAGCTA
TATCATCACTATAATAATACTTGGGTCACATAATTTCGGTCTATCCTCCG
AGGCACGCCAATACGCAGCACCAGCACTCTTCAGTGTATTTATCACCTCT
GCTCATTTCCCTTCGTAGTATACAAAACTGTCAACGATAAGCTCCATACA
GGTATGGCAGCCCAATCTTCGAATGATTCGCCCCTGTACTGTACTCTGAA
TAACATATATGAGTTGTTTCATATTCCATCCTCCTGCGTTTCCTGCCCGC
AAAATGCTCCGCTTTGTCTTATTGCTCGAAATAGCATGTGTGGGCGATGT
ACATTAAGAGTGGCCACACCTTTCCCATCCCACACATCACGAAGCCCCAA
GCGTTCCGGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10830:1690..7049-

>mRNA_A-nodosum_M_contig10830.2.1 ID=mRNA_A-nodosum_M_contig10830.2.1|Name=mRNA_A-nodosum_M_contig10830.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=198bp|location=Sequence derived from alignment at A-nodosum_M_contig10830:1690..7049- (Ascophyllum nodosum dioecious)
ATGGCTTCCGTCTCTGCGTGCTCCGATAAAGGGTCGCCGGGGCGATTCGC
TTCTGCCTTGCCCGGTCAAGAGGAGCAGCAGCAGCACACCCAGCCAGGGG
GGAAAAATGTCAAAACGTTTAGCATGTGTGGGCGATGTACATTAAGAGTG
GCCACACCTTTCCCATCCCACACATCACGAAGCCCCAAGCGTTCCGGT
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