mRNA_A-nodosum_M_contig1083.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1083.3.1
Unique NamemRNA_A-nodosum_M_contig1083.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1083.3.1 vs. uniprot
Match: A0A6H5KYI2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYI2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.040e-15
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:   50 IVDSLVTLAMLR----SKEEKEEEIGTRRECMRALIGLAESRSTRSMPAMRSLLSSTPSGRGVKCKKLVGRLRICKDILTRPA 286
            +V+SLV L+M R    +  + EEEIG RRECMRAL+GLAESR  R MPAMR LLS+ PSGRG K   L  RL  C++IL   A
Sbjct:  510 LVESLVVLSMGRVDGSAARKSEEEIGMRRECMRALVGLAESRVVRDMPAMRLLLSTDPSGRGAKDATLTKRLEECREILRSHA 592
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1083.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYI2_9PHAE1.040e-1557.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1083contigA-nodosum_M_contig1083:47691..48386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size322
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866469.1263332-UTR-A-nodosum_M_contig1083:47690..477661680866469.1263332-UTR-A-nodosum_M_contig1083:47690..47766Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1083 47691..47766 +
1680866469.1590304-UTR-A-nodosum_M_contig1083:48362..483861680866469.1590304-UTR-A-nodosum_M_contig1083:48362..48386Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1083 48363..48386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866469.1369307-CDS-A-nodosum_M_contig1083:47766..478681680866469.1369307-CDS-A-nodosum_M_contig1083:47766..47868Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1083 47767..47868 +
1680866469.1458688-CDS-A-nodosum_M_contig1083:48242..483621680866469.1458688-CDS-A-nodosum_M_contig1083:48242..48362Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1083 48243..48362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1083.3.1prot_A-nodosum_M_contig1083.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1083 47767..48362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1083.3.1

>prot_A-nodosum_M_contig1083.3.1 ID=prot_A-nodosum_M_contig1083.3.1|Name=mRNA_A-nodosum_M_contig1083.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp
MLRSKEEKEEEIGTRRECMRALIGLAESRSTRSMPAMRSLLSSTPSGRGV
KCKKLVGRLRICKDILTRPATFV*
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mRNA from alignment at A-nodosum_M_contig1083:47691..48386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1083.3.1 ID=mRNA_A-nodosum_M_contig1083.3.1|Name=mRNA_A-nodosum_M_contig1083.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=696bp|location=Sequence derived from alignment at A-nodosum_M_contig1083:47691..48386+ (Ascophyllum nodosum dioecious)
TCGGTCTCTCCTTCAATCTGATCCACCGTTGACCTCTGCCAAACGGGGTA
TCGTGGACTCTCTAGTCACACTCGCAATGCTGAGATCGAAGGAAGAGAAA
GAGGAGGAGATTGGGACTAGACGGGAGTGCATGCGTGCTCTCATTGGCCT
TGCTGAATCGAGATCTACAAGAAGTATGGTGAGGATAAAGGCCTGTCGTG
GTAGTAGGTGATTGCTCATATTGCGGGGGGAACGGACTTATTCAACGTAG
AAAAAACTACACTGATTGACGAAGACTCGTCGTAAAGCTCTCATCAAATT
TCTCTAAAAGGTGTCTCCTGAATGTACGTTATCCCGAATGACGACTACAA
TGTTACTGTGTCGCTTATGTATTCTCTGGTAGAGCCAGCCGCATTGCCCA
CCAAGTGCCAACCCTCGCGAGCCAGGATCCAGGCACTTGGAACGCCCGGG
ATAGCATCAAGAATCTTGGGGTATTTATTTTTAACATCACTGCGCTCTTC
GATTTTTCCCTGTCGCTTACCTACCTCTTCCTGTTACTGTATAATGTTCC
AGCCTGCTATGAGGTCGCTTCTCTCTTCAACACCCAGCGGCAGAGGGGTT
AAATGCAAAAAGCTCGTGGGAAGGTTAAGAATATGCAAGGACATACTCAC
GCGGCCGGCTACATTTGTGTAAGTGTAGGCGAAGAAAATATGTCAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1083:47691..48386+

>mRNA_A-nodosum_M_contig1083.3.1 ID=mRNA_A-nodosum_M_contig1083.3.1|Name=mRNA_A-nodosum_M_contig1083.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig1083:47691..48386+ (Ascophyllum nodosum dioecious)
ATGCTGAGATCGAAGGAAGAGAAAGAGGAGGAGATTGGGACTAGACGGGA
GTGCATGCGTGCTCTCATTGGCCTTGCTGAATCGAGATCTACAAGAAGTA
TGCCTGCTATGAGGTCGCTTCTCTCTTCAACACCCAGCGGCAGAGGGGTT
AAATGCAAAAAGCTCGTGGGAAGGTTAAGAATATGCAAGGACATACTCAC
GCGGCCGGCTACATTTGTGTAA
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