mRNA_A-nodosum_M_contig1083.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1083.2.1
Unique NamemRNA_A-nodosum_M_contig1083.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1083.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1083contigA-nodosum_M_contig1083:34883..42660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size600
Hectar predicted targeting categoryother localisation
Exons3
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866469.0553756-UTR-A-nodosum_M_contig1083:34882..349661680866469.0553756-UTR-A-nodosum_M_contig1083:34882..34966Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1083 34883..34966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866469.0700493-CDS-A-nodosum_M_contig1083:34966..350031680866469.0700493-CDS-A-nodosum_M_contig1083:34966..35003Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1083 34967..35003 +
1680866469.0786273-CDS-A-nodosum_M_contig1083:41933..422181680866469.0786273-CDS-A-nodosum_M_contig1083:41933..42218Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1083 41934..42218 +
1680866469.0862699-CDS-A-nodosum_M_contig1083:42466..426601680866469.0862699-CDS-A-nodosum_M_contig1083:42466..42660Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1083 42467..42660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1083.2.1prot_A-nodosum_M_contig1083.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1083 34967..42660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1083.2.1

>prot_A-nodosum_M_contig1083.2.1 ID=prot_A-nodosum_M_contig1083.2.1|Name=mRNA_A-nodosum_M_contig1083.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=172bp
MERKEHLASEAKDEIPQYPAQIVKRSAAIWPSHPTGPIAPAGTESSQSGP
VCYIPEREAASGYQPGTASILEPGGAIRLPTSIRQGSSFESPFWARFGSV
GISSSHDGESHQNMDNKPQVQVLSTFSHVECTNFVAKSTVGVLSLRVLQD
ALVETLDRINVDIVEFVACNVL
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mRNA from alignment at A-nodosum_M_contig1083:34883..42660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1083.2.1 ID=mRNA_A-nodosum_M_contig1083.2.1|Name=mRNA_A-nodosum_M_contig1083.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7778bp|location=Sequence derived from alignment at A-nodosum_M_contig1083:34883..42660+ (Ascophyllum nodosum dioecious)
CAACACTTTTTTATTATATCTCGTTAGCTTTCTCATCAATTAAGCTTTTT
CAAGAAGAAAGCCGCTGTGCTTGACGACGAAGATATGGAAAGGAAGGAGC
ATCTCGCATCAGAAGCAAAAGGTGACCGGGTTCGACGGCTATTTGTATTT
TTTTTTTTTTTTTTTTTTTCAATGATGTAGACTAGCTCTATAATGCGTGC
TTCATCTTGTCCACAAGAGGGTCCCTTTTCAAAATCGTTTCTTGTCCGTT
GTAAACATGTCATAATGTTGTGAACGGAGTGGAGCTATCATCGCTGCTCT
TACTTACGATAGATTATCTCTGGGACCTTACTTTACCCACTTTTGTTTGA
TGTTCTATGCGTACAGAACAGTACTTATTCCTCTTCTTGTTAACGCCTCT
TTGACTACTACTACTACTACTGCTGCTGTTAGTACGACCACCAAGCTTCG
CCGGTACTTTCAACATTCCCACTTCGTACCAATAATAGTGGGTGTGGGAA
AGAGAGGCGCATATTAATTGGCCCATGGTGACTTGCCGCAAGGCAGCACT
CGTTCGGAACTACGTTGAGGTTTACTGGGCCTGTGCCGGCGGACTTTCGA
CAGTGTATGGTCACACATATAGCAAGAGTATGGATAAACCGGGTAAGGTT
GCCAATCCTGCTCGTGGTCAGCTGAAGAGGGAAAATGAATATTCCCCTGT
CCGCGTTCAGTTCGTGCCTGAGAATTTGGTCTCGCGAGACGGTTTCGGCA
GTCCCGTCTCGCGTCAACCTGCTCATCTCCATGCTCAGGCTGAATCTGGT
GCTTGCGGAGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATATATTAATT
TAAACCGCCATACGCATGAACGAACGCCATCGGTACGCTAATGCGTGACC
CGATAAATTCCGGACTAAGCCGATGGCTATCATCGCGGTTTTAAATAAAT
AAAGTGATTCCGCCGCGGAACTCGGGAGGAACCTCGCAAGTAAGCACCAG
ATTCAGCCGGAGTATGGAGATGAACAGACTGACGCCGGACGGGACTGCCG
AACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGCGAACAGGGAAAA
TGATATTTTCCCTGTTCAGCTGACCACGAGCAGGACTGGCAACCTTACCC
GGTTGATCCATACTCTTGCTAGATGTATGTGTGACCATACATACATAATA
TATAGGCTCTATTGATTTGTCCCAGCGACTCTCTGTTTCTCTAAGAACGC
TCCTACTAATACTACTACGGTATTTCCCCTTTTCTAGATCCAAATCGATC
AGTTAATGAACACAACACATAAAAACACTGTTGTGATGGACTAAAAAAAA
AAAAAGGATGTAATCCGGAAGTGCAAATATAATGTTCACCTGTACTAATA
TAAGCTTACTGTTCTTCTTTGTCTCTTTTTACTACTACATAATGATTAAT
GTACTTGTATAGTTCCCTCTCTGACCCTAATTTAATTTCCCCTATGTCGC
CTCCCATCAATTTATATCAATAACAAAGAACCTCACCTGTATAGTAATAT
TAATTTAATTTTACTTTAATTTCTCTAAGATCATGTAAGACCCTATTACT
ACACTGTAGTCCAGAACTCTTAGAGTAGAAGGATTTGGTTTTGGTGTCCC
TGCATGGAGATTAATGTAAGTAGTGTACAGTATAACGGAGGGCTTCTCCC
CGATATTATACTGTCGACCCGATGGAATTACATTGTTGTTGTTGTTGTCT
TCACATTAACCGATCGGGCCTCAACCATACCCAGTAATATACGTGGTTGC
CAATCCGGTACGTGGTCACAAAGAGGTACCAAGGTCAACGGGTCACATCA
TGGTGACAACCCGCTACTCAGACCAACAGGGATTCAAATCGCGACAAAAA
GTTATGCGACTCTACAAGCGATGGCACCGACCAATAACAAAACGGTTCAT
CAAACTTCCTTTACTCCATATCGAGAGCACCCTCGATCGACTCGGATTGT
TGTCGCCTACCCACGACCAGCGTTCTCAGCAACAAATCGGACAAACACGT
TCCAACCAGTTTTGATCAACAATTCCAAGTTTCTCAAGGCTACACATCGT
ACAAAAATAAGGAAAATTGAAATACCGAGGTCCATGGTGGTGGAGGCCTT
GAGCTGTTGAAGCCGGCGCGCGAGCCAGCATCCAGCCGTCACAAAGCCCT
GTGCATCCTTGAAAAAGCCCCACGAATGTTGCCCGTTCGCCGCTCCATGT
GGCCCTCGTAGGAAGAAAAATGACCGTGGTCAGAGATCAGCTTTTCCCTC
AGAAACCTCCCGGTTCGCGCTTTCGATTCTCGCGCACAGGGGTTCAGCCC
TCCCCTGGCTCGTCAACGATCGAGCTGCCCTCCGCCTTCGCCGAATCTGG
TTGGGGAACCCTTTTGATACCATGAAGAGGTTTTGTCTCTACAGCCAATG
TTCCCACCTAAACCTTTAGACACTCTTCCACTTGAGGTGGATGCTCAGAA
GGTTTAGATGCGTTCAGATTTTTCTTAAAATTAAAAAAAAAAATAAGTTG
CCTTATAAGAAATTTCCTGTCTCTCTCTCTCGGTAGAAATAAATGTTTTT
CGGTGAGATGAAGAACGGGAAAGAGCTAGTCCAAGTTTCAGCTCGGTCTG
TCTCTTAGCGGGACTGTGAGAGCATTTTCTCGGATTTTTCCACATTTTTT
TAATGGCGAACAGCGCTGTTCACCAGAATCGACCTTAGGTGCATTTTAAA
ACTGCTGGTAGACATCTCGTCCACTATCGAACGATACATCTCTATGATCG
CACCAGCAATGGATTCCATTTGAGCCATCGGCGGATGGAATCCGCCAGCG
GTTCAAAAATAAAGAAGACGTAAGCTCCCGTTCTTAGACCGCCGTTCTTC
ATCATCTCACCAAAATATTGTTGTACTCGGTCCAGCATATGTAAGGACGC
AATATCTCCCAAAGGAGAATACCCAACCAGTTTGTAGCTGTCAATTGCCA
TCCACCTCTACTACGGTGTAAAGAGGAACGGAAACGAAGGGAACGAGAAC
CTCTCCGGAAACAAACAGGGAAGGTAGTGGTAATTTCATCAAAATGAGGC
CGGGTTATCCGTCCTCAACAGAGAGAGCATTATAAGAAGAAACAAACATT
CGAAAAATATCTACGAAATATGATGCCCCTCTCTTGGTTGTTCTAACAAT
TGGTACCAGATAGTGCACAACGCACGTTTACACTCTAAATCACTACTTAA
CGTATTACAAATACAGAGACTTCTGGCTTTGCATGGTCGTGTAACAGTCT
ACGTGTTTTGTATGTTTGAGTCAGTTGCCGCTAGATTACGGGTAGTAGGC
TATTGCCGTTTCTCCGTTACCGGGTCGTTCTGTTTATTCGTAAATAGCCT
ATCTCTCTCAAGATGCCTGCTGCATCTCCTTCAAGTCTCACAAGAAAATA
GCATTAATTTGCAATATTTTTACCTTATGATGAATGCAATAAGATGGTGT
GCTGGTCGGTCTCTCTCCGTGGTGTATGTATGGTAGTGATTTGCAAGTTA
TGTTTTTCGTCCAGCTTTTGGTTGCTGCATCGGGAATTCGCTTTCAAAAT
TCTCTTATTTCCTATCCATGCTCTCATTTCTCGCTCTCAGTAGAAATGCT
TGTCACACGGCAAACAACGTACATATTTATATAGCTCTAGAGTATTCATT
CTTCTTCACACACACACACGTGGTGGTATGCATATCTTGCCACTCGACAA
TGTGTGTTTTCTTCCCATTTACTCTGGACGTCGAGTTCGTTGGATGTACC
AGCCGGGGTCACACAGGAGGAAGCTCACACAGGATTTCTCACCCAACTTC
CTTCTGCGGTGCATGCCTTTATTTTTCTTGTGAGAACGATTCAGCCGTTT
CCTTCCCTCGTCGACCGTGAAGTCGAGTTTTGTATACTAACGATTTCCAC
TGCTTGTTGGGCATGTGCCGACCAAAGCACCGAAAGCATATCAAGAGAAC
TCAAAGGGCAATTCCGAGAATGGAGAACGACGAGCAACATAACATTATTG
CTACAGCAGCGCAGCTGTTGCAACGGACTAGATCCTGCACATTTATCCGT
TTTGTCCACAGCTCCAGCTCTATCTAACTGCTCGTAAATACTATCCTGCC
GGGTGACGCGACATACTGGATGATACCTTCAACGAAGAATATTTACGAAA
AATAACCCTCCTTACAGATAATGATCACTGTCCGCAGCCCCGCACACCTG
TTCTAGAGGAAAACTATTTAATAGCGCACTCTGTTCTAGAGGAAGGCCGA
CATGTGATATGTGGCTTAGCAAAAGTGGGAGGGAACTGCGCATAGAGTGT
GAGGTAATCCCTTGACGACGTGGAGTCATACTTATTTACAATAAGCAGGA
CGGGTACTACGATAGACCATGCCGCGTGCGGACAGTCAAGTTGTCTACTT
GTGCGTAGCGTGTGATAATAGACTTCGGTTTTTATACTATTAATAGTAAA
TAATAAAATATAGTACACCATTGAGGAGAACAGGAACCGTTCCAGTTCAA
TGGTATTGAGGTCGTTTGCGTGTAGAAAAAGGCGATCGGTCGGATCGTAA
TTAAGGCAATTCCGATATCACACGTGGAACGGGAGACGACGTCCAAGCGA
GCGCGAGTGAAATAATGAATGAGTGCTGTAGAATTTAGGGGGGATTGATT
TAGAAAAAATTGTAGAAAGTATGGAGCTAGTACGTCAATGAGAGGAGAGC
ATCCCATGAAATATGAGTTAGTCGATTCAAACTTCGGATACTGTCGACTT
CCAGATAATTGGGAAATGGAGGTCGTGAAGTTCCAATAAAATAAAACTAG
TCCAAACTCGCACTTTTCCAACTGGAGAGCTCCATGTGAGTTACCGAGGT
GGAGGCAAGAATCTCTCGGCGTGCCTTGAGGCTGGATGAACTGACACTAA
TGGTAATGCCACATAACAAACTCCGCCAAGTCCCTCTCCTTCGGTAAGGA
ACGGCCCCTACAACTGCAAGGAACGCATGGCAGATCAGACGCAACCTCGT
TCGGCACTTTCGGTGAAAGATACCTTCATCAAACCAATTGATTCGCTTGC
TCGCTCCACTTTGGCCGTGGTCGTTCTATCCTAGCCCTCCTGACTTGTGA
GGGACCTTTTCCACAGAGATCGCTGCCACCATTTTTGAGGTCTCCGCAGA
AGTCGCTCATGCTGCCTTTGCTCGGCCTAGTCGCATCCCCTTTGCTGCTG
TGGAACTGGCTTCAAGATCAATGGAACCCAAGTTAGCGTATTGTATGTAT
GGTCACACATATAGCAAGAGTGTGGATGAACCGGGTAAAGGTTGCCAATC
CTGCTCGTGGTCAGCTGAAGAGGGAAAATGAATACTTCCCTGTCCACGTT
CGCGCCTGAGAATTTGGTCTCGAAAGACGGGTTCGGCAGTACCGTCCCGC
GCCAGTCTGCTTATCTCCATACTCAGGCTGAATATCGTGCTTACTTACGG
GATTCCTCCCGAGTTCCTCGGCGGCGTCAATATATTTATTTTAAACCGCC
ATACGCCATCGAGTCAGTCCCGATTTTATCGGGTCACGCAATTGTGTGCC
GATGGCATTGACTGCCGAGAGTCCGCCGGCACAGGGCCAATAAATCGCAA
GGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAATTAAT
ATGCTCCTCTCTTTCCCATCTCCACTATTGGTGTGAAATGGGCACGTTGC
GTGATATGTTAAGTCAATTTCTCTATAGTTCTACAAGCTCTGAAAATGAA
CACAAGCGCTTCCTTCCAGATGTTTTCATACTAGTACCTTTCGACCTTGA
GAAAATGAACATTTATCGATGACATTTATGTATTTGTTTTTTTAAACGTT
TGTCCATTTCCCGGACATCCTCCGCTCCGTTTGAACCGACCCTATGTTCT
ACGTTGTGAGCGGGCTAGTATGAGAGAGAGATTATGGAACAGTTAGAATG
GAATACTTAAAATGTGGCCAATGAGATGGTTTAGAAATAACGAGTGTTAG
TCGTGTTAGCTGTTGCCCCCTGCCACAGCGAACAGAGATCGTTTTACGGC
GTCTTCGGTCCTGATGTTCAAAATATATAGGTGGCGGTATCCTACCCCAT
GCCATTCGTGCGTGCCGCCATAAAACGGGCAGTGGGTCAGAGTTCATCTC
GCCCCTCCCGACATAGCTCTAAGCAAGCATTGTGCCTCCCACGACACGAT
TTTCTCGCAGAGGCCATCCGATCATCTGAGCCCGCGAGCATCGCTTCTTG
CTCCATGCCACCTTCCCCGCAAGATCCGCTAGGCTTATCACGCGAGTATT
CTAGTGAGAAAAATGTTCACTATATAATAACTAGAAATGGTTACAAGTAC
TCGCAACTGTTATGCGTCCTGCTATTATCATCACATTTGAACGTAAGCCG
TCATTCTATTAATAGAGGCGTTTGATTTCGCAGATTTCTGTGTCGCCAAT
GTGTCCACTTGAGATCAACTTATCGCATTTCAAGGACCTCGGCGGCGCGT
AAACACAAACCCGATTAATCGTGTCGAACGACTCGCCCTTTTAGTAGGGC
CTTTTCTTCGAAGCGATAGCGACCTTTGATTGTTATTACATAATTAGTTT
GTTGTCGTGGGTAGAAATCGAAGAAACGATTCAAAGAAGCAAATCTACAA
TGTCTGCCGCAAACTCCAAATTTGATATAAACAAGGTAACCGTATCTGCC
ATATGGAGCATGTCTGCCTCGACAGCGAAAATCACGATTGACTCAGTATG
TATTGGAGCGACAACGATTGAACACCAATGTACACGTACATGAGGTTTCG
AGATCAGGCAAGCTGATTGATGTCAACGGGTCTTCACCAACGACTAAAAA
CAACTTGTGTCGCAATTGCTCCAGTACACACACACTGAATCATTCCTCAA
ACGAATTAAGCACCGAAAGTCAAAGCTTTAAAATTTAATGTGGCTTACCC
GTATTGCACGTCACCTTCTGGGTCGATTGCTCTCTTTGCACCAAAAAACA
GATGAAATCCCACAATATCCGGCACAGATTGTCAAGCGCTCTGCAGCCAT
TTGGCCCAGTCATCCTACTGGACCAATAGCCCCTGCGGGAACGGAGTCTT
CTCAAAGTGGGCCAGTCTGCTATATACCCGAACGGGAGGCAGCCTCTGGT
TATCAACCAGGAACCGCCTCCATACTTGAGCCCGGAGGAGCTATAAGGTT
ACCCACCAGCATCAGACAAGGAAGTTCCTTTGAGTCGCCCTTCTGGGCAA
GGTTCGGGAGCGTTGGCATCTCAAGTTCCCATGACGGTAAGTGTCACAAG
CAATAACTGGTTCTAATCGGTTCGTACGCTTCTTTGCCGGGTAGCAGAGT
TCGTTACTCGTCTACTGCTGTAACGCGTTTTGACGAGGGCTCGAAAAACT
AGTAGTGAGGAACCCATTGTGAGGGTTTTCATGTCCAAGATACTCCTGCC
AGCCAATGGTCAGAAAGTATCAAAATCTTCCTTGATGACCTCAGTTTAGA
TCGCGGATTATCCCTCAATCACTGCCCGACGCAGGAGAAAGTCACCAAAA
CATGGATAATAAGCCCCAGGTACAAGTGCTGTCGACCTTCTCTCACGTGG
AGTGTACCAACTTCGTGGCTAAGTCCACCGTCGGGGTCCTTTCCTTGAGA
GTGCTACAAGATGCCCTTGTCGAGACGCTTGATCGAATCAACGTGGACAT
CGTTGAGTTCGTGGCCTGCAACGTATTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1083:34883..42660+

>mRNA_A-nodosum_M_contig1083.2.1 ID=mRNA_A-nodosum_M_contig1083.2.1|Name=mRNA_A-nodosum_M_contig1083.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at A-nodosum_M_contig1083:34883..42660+ (Ascophyllum nodosum dioecious)
ATGGAAAGGAAGGAGCATCTCGCATCAGAAGCAAAAGATGAAATCCCACA
ATATCCGGCACAGATTGTCAAGCGCTCTGCAGCCATTTGGCCCAGTCATC
CTACTGGACCAATAGCCCCTGCGGGAACGGAGTCTTCTCAAAGTGGGCCA
GTCTGCTATATACCCGAACGGGAGGCAGCCTCTGGTTATCAACCAGGAAC
CGCCTCCATACTTGAGCCCGGAGGAGCTATAAGGTTACCCACCAGCATCA
GACAAGGAAGTTCCTTTGAGTCGCCCTTCTGGGCAAGGTTCGGGAGCGTT
GGCATCTCAAGTTCCCATGACGGAGAAAGTCACCAAAACATGGATAATAA
GCCCCAGGTACAAGTGCTGTCGACCTTCTCTCACGTGGAGTGTACCAACT
TCGTGGCTAAGTCCACCGTCGGGGTCCTTTCCTTGAGAGTGCTACAAGAT
GCCCTTGTCGAGACGCTTGATCGAATCAACGTGGACATCGTTGAGTTCGT
GGCCTGCAACGTATTG
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