mRNA_A-nodosum_M_contig1082.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1082.1.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 465 bits (1196), Expect = 1.410e-150 Identity = 292/605 (48.26%), Postives = 383/605 (63.31%), Query Frame = 3
Query: 186 IPAVPNQRASRKFRLEDAAVSDELLTALEEKSVVEVKKLLAELPEGTTTILNTPSLKEKHMLRTPLMAAAAKGDYAKWTATVRAFDQQFVNKLQRDTEMRIQLANRDDNGMTLAMIAARSKNVAITASVMWEIEQTEAKLALEAHDYKRMSLLTHSASVGPAPIFQEVRRSLTVVNGSEEVLVKELLHKSADDKTILMHAAKSGDAMLLKMVGDACRLYLSPGQVRTMITERDSDGLNMLMHAASCRTSTSSA----------SGTQAKKGSTTAGTSEATRPYASGTATGSIAGGNSTIPAEAVDNTSDDSASSDNEAKSATTAEKGVSEPSKGRKAKITLKPQVHDDDAAGAVVVPVFKIALAFVKNCLWKNQVLDELRAIDLWGRSVLTHALLSGHEHMFEAVLTAVRDDIPDEEISEMLETNEGEREDVPMINALAQGDAAMQQLYALRACQLKKDVQARSKLSTVNAKIESFIPGKLIVVFQLLRPQLESEGQFLLLLVMCALAPIVSLAASAATSAS-SKNKDITSRSNPLSALLGAPALFFWGLGTSDIGEYSFLHWSSTMSSTAMAVATIAIPAIDHFFNSKTAASIAET--ICCQE 1961
I VP R+F L+DA SD LLT +E+ + ++ +LL++LP G T++L TPSL KH +RTPLMAAAA GD A TAT++A +QQ+ NKL R++EMR QL NRD GMT M+AARS +VA+ ++ EI TEA LE HD+K M+LL H+AS GPAPIFQE ++++ G +E L R M+ ERDSDGLN+LMHAASC S+ + K G G +E++R + GTA+ + G T PA+A A+ D + T EK V +K K V+ DA VVVPVFK+A+ V CLW ++VL +L+A+DLWGRSVLTHALLSGHE MFEA AVRD + DE +SEM+ETNEGERED PMI+ALA+G+ M++LYALRA QLKKDV ARSKLST++AKIE FIPGKL+V+FQLL PQ+ Q +LL +MCALAP+V LA + + S SK+ + +RSN LS LLGAPA+FFWG+GTS +G+ + L WSS++S+T+MA AT+AIPA+D FFNS+ A++I + +C E
Sbjct: 42 INQVPGLGIERRFSLKDAEESDNLLTCIEDGDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLATCTATLQALNQQYSNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNTEALATLELHDHKHMTLLMHAASNGPAPIFQEAQQAMRKAFGGDEDL-------------------------------------------REMMVERDSDGLNLLMHAASCCAPASALVPAETPPVDPDSSHKKDG----GPAESSR--SKGTASKTALTGGGTSPADASSGAVAGDAAKDKK----TAVEKTVEADTKEEKG-------VNKRDA---VVVPVFKVAVRLVTRCLWTDEVLQQLKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQLILLYIMCALAPLVKLATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTA-LGWSSSLSATSMAAATLAIPAVDSFFNSRKASAIGDKARLCSDE 582
BLAST of mRNA_A-nodosum_M_contig1082.1.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 216 bits (550), Expect = 4.830e-56 Identity = 178/602 (29.57%), Postives = 286/602 (47.51%), Query Frame = 3
Query: 216 RKFRLEDAAVSDELLTALEEKSVVEVKKLLAELPEGTTTILNTPSLKEKHMLRTPLMAAAAKGDYAKWTATVRAFDQQFVNKLQRDTEMRI---QLANRDDNGMTLAMIAARSKNVAITASVMWEI----EQTEAKLALEAHDYKRMSLLTHSASVGPAPIFQEVRRSLTVVNGSEEVLVKELLHKSADDKTILMHAAKSGDAMLLKMVGDACRLYLSPGQVRTMITERDSDGLNMLMHAASCRTSTSSASGTQAKKGSTTAGTSEATRPYASGTATGSIAGGNSTIPAEAVDNTSDDSASSDNEAKSATTAEKGVSEPSKGRKAKITLKPQVHDDDAAGAVVVPVFKIALAFVKNCLWKNQVLDELRAIDLWGRSVLTHALLSGHEHMFEAVLTAVRDDIPDEEISEMLETNEGEREDVPMINALAQGDAAMQQLYALRACQLKKDVQARSKLSTVNAKIESFIPGKLIVVFQLLRPQLESEGQFLLLLVMCALAPIVSLAASAATSASSKNKDITSRSNPLSALLGAPALFFWGLGTSDIGEYSFLHWSSTMSSTAMAVATIAIPAIDHFFNSKTAASIAETICCQEWFFNLNAWVRWHK 2000
R+ ++ S+ +L A+E + ++++ L+ + + + PS+ +H +RTPLMAAAA G A + + A ++ + + + QL D++GMTL M+AARS NV I +V+ + E SA I E++R ++ + ++LL SADD+TILMHAA+ GD M + V AC+ ++ P ++R ++ + DS+G+ LMHA S + + +G T + + + D+ + V K ALA V+ +V ++L+A D WGR++ HA+L+ +F+AV A R+ I D+EI+ ++ N+ ++ D M AL AM A R +LK+ + + ST+ +KI+SFIPGKLIV+FQLL P++ S + LL++M A+AP +S AA A K R + +S L APA+FFWGLGTS +G + W+ + ++ A+AVATI IPA+D FFNS+ + CQ W F+ A +W K
Sbjct: 59 RQTSARESESSNRILGAVESRDHAKLREGLSGSVKPPSNAVLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRMETNRISLRKKQLEYMDESGMTLLMLAARSGNVGILEAVVERVRIAPEXXXXXXXXXXXXXXXXXXXXXSAVF--TVILNELQRCY------KDNVEEQLLASSADDRTILMHAARCGDQMGVLSVSHACQRFIMPSRLRKLVKQVDSEGVTFLMHAISATS-------------------------FHTGAPTATXXXXXXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAPRDEWVLDPGMAVLKSALALVE------EVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALMGINKEDKSDTVMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEVGSSDKLTLLIIMSAIAPGLSWAAGLV--AREKPGSTEKRRSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSRKVEQWYDKWSCQRWRFSQRAHAKWVK 619
BLAST of mRNA_A-nodosum_M_contig1082.1.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 145 bits (365), Expect = 1.950e-33 Identity = 130/467 (27.84%), Postives = 214/467 (45.82%), Query Frame = 3
Query: 216 RKFRLEDAAVSDELLTALEEKSVVEVKKLLAELPEGTTTILNTPSLKEKHMLRTPLMAAAAKGDYAKWTATVRAFDQQFVNKLQRDTEM---RIQLANRDDNGMTLAMIAARSKNVAITASVMWEIEQTEAKLALEAHDYKRMSLLTHSASVGPAPIFQEVRRSLTVVNGSEEVLVKELLHKSADDKTILMHAAKSGDAMLLKMVGDACRLYLSPGQVRTMITERDSDGLNMLMHAASCRTSTSSASGTQAKKGSTTAGTSEATRPYASGTATGSIAGGNSTIPAEAVDNTSDDSASSDNEAKSATTAEKGVSEPSKGRKAKITLKPQVHDDDAAGAVVVPVFKIALAFVKNCLWKNQVLDELRAIDLWGRSVLTHALLSGHEHMFEAVLTAVRDDIPDEEISEMLETNEGEREDVPMINALAQGDAAMQQLYALRACQLKKDVQARSKLSTVNAKIESFIPGKLIV 1607
R+ +A S+ +L A+E ++++ L+ + + PS+ +H +RTPLMAAAA G A +T + A ++ + + R QL D++GMTL M+AARS +V I +V+ + EA L D+ ++L H+A + +F + L ++ + ++LL SADD+TILMHAA+ GD M V AC+ ++ P ++R +I + D +G+ LMHA S + A T G + + ++ + G++ V K A A VK +V ++L+A D WGR++ HA+L+ +F+AV A R+ I D+EI+ ++ N+ ++ D M AL AM A R +LK+ + + ST+ +KI+SFIPGKLIV
Sbjct: 16 RQTSAREAESSNSILGAVESGDHAKLREGLSGSAKPPANAVLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAIGEQRMETNRISLRRKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLLDRDHSATTVLMHAAGARRSAVFTVILDELQ--RCYKDNVEEQLLASSADDRTILMHAARCGDQMGALSVSHACQRFIMPSRLRKLIKQVDGEGVTFLMHAISATADHTGAPTTXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXAGEGAPRNEWVLDPGMA----------------------------VLKSAWALVK------EVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREYILDDEIAALMGINKEDKSDTIMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIV 446
BLAST of mRNA_A-nodosum_M_contig1082.1.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI) HSP 1 Score: 143 bits (361), Expect = 1.050e-32 Identity = 100/255 (39.22%), Postives = 142/255 (55.69%), Query Frame = 3
Query: 1224 VPVFKIALAFVKNCLWKNQVLDELRAIDLWGRSVLTHALLSGHEHMFEAVLTAVRDDIPDEEISEMLETN-EGEREDVPMINAL-AQGDAAMQQLYALRACQLKKDVQARSKLSTVNAKIESFIPGKLIVVFQLLRPQLES--EGQFLLLLVMCALAPIVSLAASAATSASSKNKDITSRSNPLSALLGAPALFFWGLGTSDIGEYSFLHWSSTMSSTAMAVATIAIPAIDHFFNSKTAASIAETICCQEWFFNL 1976
+PV + AL F + LW + L A D W RS++ HA++SG +FEAV A R D+ DE+I +L+ E + A+ +Q M QL + LK DV R STV AKI++FIPG LIV+FQLL P+ + +G LLLV+C +AP S A A S +D + + S PA+FFWG+GTS I SF +W+ + S+ A+AVATI IPA+D +F+ + A + + +F NL
Sbjct: 135 LPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGA-----AMSVKRDPETTNTRAS-----PAMFFWGVGTSKIAPNSF-NWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTI--FFLNL 376
BLAST of mRNA_A-nodosum_M_contig1082.1.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 144 bits (364), Expect = 2.140e-32 Identity = 95/255 (37.25%), Postives = 138/255 (54.12%), Query Frame = 3
Query: 1224 VPVFKIALAFVKNCLWKNQVLDELRAIDLWGRSVLTHALLSGHEHMFEAVLTAVRDDIPDEEISEMLETN-EGEREDVPMINAL-AQGDAAMQQLYALRACQLKKDVQARSKLSTVNAKIESFIPGKLIVVFQLLRPQLES--EGQFLLLLVMCALAPIVSLAASAATSASSKNKDITSRSNPLSALLGAPALFFWGLGTSDIGEYSFLHWSSTMSSTAMAVATIAIPAIDHFFNSKTAASIAETICCQEWFFNL 1976
+PV + L F + LW + L A D W RS++ HA++SG +FE + A R DI DE+I +L+ E + A +Q M QL + LK DV R STV AKI++FIPG LIV+FQLL P+ + +G LLLV+C +AP S + + + + +R L PA+FFWG+GTS I SF +W+ + S+ A+AVATI IPA+D +F+ + A + + +F NL
Sbjct: 253 LPVIQAVLEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNSF-NWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTI--FFLNL 504 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1082.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1082.1.1 >prot_A-nodosum_M_contig1082.1.1 ID=prot_A-nodosum_M_contig1082.1.1|Name=mRNA_A-nodosum_M_contig1082.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=656bp MDEPQPGPIPAVPNQRASRKFRLEDAAVSDELLTALEEKSVVEVKKLLAEback to top mRNA from alignment at A-nodosum_M_contig1082:74414..126671- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1082.1.1 ID=mRNA_A-nodosum_M_contig1082.1.1|Name=mRNA_A-nodosum_M_contig1082.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=52258bp|location=Sequence derived from alignment at A-nodosum_M_contig1082:74414..126671- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1082:74414..126671- >mRNA_A-nodosum_M_contig1082.1.1 ID=mRNA_A-nodosum_M_contig1082.1.1|Name=mRNA_A-nodosum_M_contig1082.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1968bp|location=Sequence derived from alignment at A-nodosum_M_contig1082:74414..126671- (Ascophyllum nodosum dioecious)back to top |