mRNA_A-nodosum_M_contig1081.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1081.4.1
Unique NamemRNA_A-nodosum_M_contig1081.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1081.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1081contigA-nodosum_M_contig1081:96228..99539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size683
Hectar predicted targeting categorysignal peptide
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866467.8857234-UTR-A-nodosum_M_contig1081:96227..962481680866467.8857234-UTR-A-nodosum_M_contig1081:96227..96248Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1081 96228..96248 -
1680866467.962248-UTR-A-nodosum_M_contig1081:96590..967771680866467.962248-UTR-A-nodosum_M_contig1081:96590..96777Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1081 96591..96777 -
1680866467.9727862-UTR-A-nodosum_M_contig1081:99406..995391680866467.9727862-UTR-A-nodosum_M_contig1081:99406..99539Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1081 99407..99539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866467.953671-CDS-A-nodosum_M_contig1081:96248..965901680866467.953671-CDS-A-nodosum_M_contig1081:96248..96590Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1081 96249..96590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1081.4.1prot_A-nodosum_M_contig1081.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1081 96249..96590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1081.4.1

>prot_A-nodosum_M_contig1081.4.1 ID=prot_A-nodosum_M_contig1081.4.1|Name=mRNA_A-nodosum_M_contig1081.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp
MYVCALLSVLELLFLYTHCININLNASKPSEHPPDRGKNIVVRLRSGNPI
KCLEEVLPRQPMLPPKRFDGMLRKFRCVQISLKAALYTIASRSSVFAVCT
PKHCQDITADHAN*
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mRNA from alignment at A-nodosum_M_contig1081:96228..99539-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1081.4.1 ID=mRNA_A-nodosum_M_contig1081.4.1|Name=mRNA_A-nodosum_M_contig1081.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3312bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:96228..99539- (Ascophyllum nodosum dioecious)
GCGGCGTCGATGCCAGCTGTCGCCCAAGAATCGTCTGGAAGACCTTTGTT
GATGCCGGTGATCGAAGAGCAAGCGTCCTCCGTCGCGAGAGATTCTTCGG
TGAAGACGGAGGTGCAGGTCTCCTTGTAGTCAGGTATGCATAACGGCTTC
CTTTCAACTTGTGAAGTAGATATTAAGGCTGTAGTAAAGAGGGAAAATCC
CTGTACCCCCGCTTTTCAACCATTCATCAAACCGGTTTCATATTTTTTAC
AAAAACAGTTTCATGCGGTACAATGTACCAATTGGGAGCCGCCATACGCC
CACAAACACCCCTGCTCGCGGCGCGCGCGGACAAAGCTGGGAGGGTGATT
GCTCAAATCGACAGAGCGGTGCCCCTCAAGGTGCGTGCGTGTTGTGGTAT
ATCAGAGGGCTCTGTCGGCTGAAGTTTTTATGCTTGGACATGCTCTGTGT
CGCTCTAATTCGTCGTCGGAAAAATCAGCCCTTGCGGCTACACCACAAAT
TAGAGGAAATCCTGCACTGGACCTGTAGAGCGCCGGTGGTGCTCGGCGGC
GTGGAGATAGTGTATCGAAAAGGCAGAATATTGGACCTAGTACAATACTC
TGGGGATTAAAATTCCTGTCTCCTTCGCGGGTGTGGCATAGACGAATTAA
AGTTGACCATTGTGATCAGAAAACTCCCCACTGTTACCTGTAGACAAAAA
AACTCTCAATTGGTCCGCATCCGGTAAGGGTGCCCCCAAAACAGCACTCG
CGCGCGCCACATGTCCCCTAGGCACCTACAGCAGTGGTATATCGAACCCT
TGTGTTGTGAATGCGCCTGAAAAGAAACGAGCTTCAAAAATGCTGCACAG
CAGATATGATATGGTTAACATTTTCGTCAAAAGACCGTCTTGTGCTGTAA
TTGGTCCACCCGGGATCCGAAGGGATCATGTTTGACGCGCCAAACAGGGG
CAATCTTATCCCTAATAACTCTTACGCCCTTAATAAGAAAGATACCTTAC
ATCCGGCTCGAGTCATTTATGATATAGTTGTACGTTACACGCAACGCGCC
GGTCTCGAATTTTGCGATGCCACATATACAAATAACCAGTTTTTCCAGCT
TTAAATATACCGGGTTTAATATGGGTTGCCATGCTGGGCATTTTTTAGGA
GAAACCAGGGCAATCTTATCTCTAGTGACTCTTCTGCCATGAAAAAGATA
GATGACATCAGGAGTGAGCCATTTGTGATGCCGAATGTACAACATACCCG
TTATTTCCACTACTAATATACTAGTTTTAATATGTACAACATACCTGTTA
CTATTTTAAATATTGTTTGCTATGCAGCAGGCATGAAAAGAAAAACCCGG
TAAATTTCTCCCGATTGACCGCTTGTTGTATTGTCGATATTCAAAAGGCC
TACATTCGAGAGGCCGGCACTTTAAACCCCTATGTAATGTAAGGAGAGAC
CGGCATTCTCAGGCCAGTCAATGATGGATATGCTTTCTTTTTCCATGATC
ATTCCCGTAAAAAGCTTCGAACCCAACTCTAAACTCTAAACCTTTACACA
TGTACAGACAGAAGTTGGGAGGGGGAAAACAGGTCTGCAGTACAGCAATA
ATAACTATGTTTTGAATTACAACATATGACGATATTGTACCGTGTACACT
GAACTCTATAAGTCGGGGGTAAAAAACGGTTCCACAAACAGTACAGCAGT
AGACTACAGCAGTACTAATAATATTTTGATACTTGTATACTTTGTATACA
CCCGATAATTTGGACATATTCACTGTGTACCAATAGTGGGTGGGGGAAAA
GAGAGGAGTACAACAACATTTGGTCCATGGTGATGCAAAGGCAGCACCCG
TTACTCGAACTACCTTGAGGACTACTGGCCCTGTGCCAACGGACTCTCGG
CAGTGAACGCAATCGGTACGCAATTGCGTGACCCGATAAACTCGGGACTG
ACCCGATGGTGTGTGATGCTGGCAAAAGTATATGGACGCCGCCGCGGAAC
TCGGGAGGAATACCGTGAGTAAGCACCAGATCCAGCGTTAGTATAGAGAA
TGAGCAGGCTGACAAGAGACGGGGCAGCCAAACCTGTCTGGCGAAACCAA
ATTCTCAGGCGCGAACAGGGGCAAGGAAATTTTCCCTTCTTCAGCTGACC
ATGAACAGGATTGGCAACCTTGCGCAGTTGATTTGTACTCTGCTGTATGT
GATGACCACACATGCATACGTATATACTGTAGCGTGTACCCTCAACTCCC
GCCTGTCATCGGGGCACCTTGGGGTTGTTGCGGGCACGCTTCGGGGATAT
ATTTTTCCCGGCCGCTATGGTTCGGTGGGTGTGCAACTCACGCGACTCCG
TGCTCCGTGCCAGGGTACTCTCAATTACTTCAGAATGTGTTTGTAAAAAT
CTGAACGCAACTGTCTTACAAGTTACTTGTACAATGCAGCAATGCTTTGC
GTTTTTTTTTTATTCGCGTGTTTAAAGGGGGGCTTTCGTCTGAGTTTGTC
GACTAGGAACAAAAAAAAACGAACGGTAACAGCAAAAAAACACGCCTCGA
GGCCAGCAAACCTCTTACTGTGTTTACTACAGCCATTAACATATTAATGG
TAACACCATTTTTCGTTGCAAGGCAGTATGGCCCTCCCCGCGTTCCCGCA
TTTCCTTCTAGACCCTCGCGTTATCAGAGTGCAATCATGATTTTTCTTAA
AACACGCCCATCACCGGCTCCCTTCGACCTTGTGCTATCGTTCTCCCGTC
GTTCGAACTCAGGTTCTCTGTACATCGCACACGAACATGATGGTCGGGTC
AAGAGCGAAGTTCTACTGTTGTATCGAACGGCCGCTAGATAGGCATGTCA
TGTGGAGCGGTCTTAAAGACAGGACGCGTACTCCTGCCATGCTTCCGACT
TTGTACTAGTAGTTTTGTATGCGAAGTCTTTAAATCGTGGCGATAGCGTA
TGTATGTTTGTGCACTTCTCAGTGTGCTTGAATTGTTATTTCTATACACA
CATTGTATAAATATAAATCTGAACGCATCTAAGCCTTCTGAGCATCCCCC
AGACAGGGGGAAAAATATTGTGGTGAGATTACGATCGGGGAATCCGATTA
AATGCCTTGAAGAGGTCTTGCCCAGGCAACCCATGCTCCCACCCAAACGC
TTTGATGGGATGCTCAGAAAGTTTAGATGCGTTCAGATTTCTCTTAAGGC
TGCACTATACACGATTGCTTCCCGATCCTCGGTTTTTGCTGTTTGTACTC
CAAAACATTGCCAGGATATAACAGCCGATCATGCCAATTGAGGATCGATT
GTTTGATAGAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1081:96228..99539-

>mRNA_A-nodosum_M_contig1081.4.1 ID=mRNA_A-nodosum_M_contig1081.4.1|Name=mRNA_A-nodosum_M_contig1081.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:96228..99539- (Ascophyllum nodosum dioecious)
ATGTATGTTTGTGCACTTCTCAGTGTGCTTGAATTGTTATTTCTATACAC
ACATTGTATAAATATAAATCTGAACGCATCTAAGCCTTCTGAGCATCCCC
CAGACAGGGGGAAAAATATTGTGGTGAGATTACGATCGGGGAATCCGATT
AAATGCCTTGAAGAGGTCTTGCCCAGGCAACCCATGCTCCCACCCAAACG
CTTTGATGGGATGCTCAGAAAGTTTAGATGCGTTCAGATTTCTCTTAAGG
CTGCACTATACACGATTGCTTCCCGATCCTCGGTTTTTGCTGTTTGTACT
CCAAAACATTGCCAGGATATAACAGCCGATCATGCCAATTGA
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