mRNA_A-nodosum_M_contig1081.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1081.2.1
Unique NamemRNA_A-nodosum_M_contig1081.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM)

HSP 1 Score: 116 bits (290), Expect = 1.350e-29
Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = 1
Query:   46 EDLRSSFPIMDLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAERFEIWKTSVI--PISTGKAPLSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTY 468
            E+L   F + DLG  S+ LG  + RDR  R     Q+ Y   + ERFE+   + +  P+  G   LSKA  P++  EIA M+ +PYR+ VGALM++A  TRPD+ +    LA+F  NPGP HWKA     +YL+ T  + +TY
Sbjct:   16 EELEKHFKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYITDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTY 157          
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A401H4R8_9APHY (Uncharacterized protein n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H4R8_9APHY)

HSP 1 Score: 123 bits (309), Expect = 1.460e-29
Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   52 LRSSFPIMDLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAERFEIWKTSVIPISTGKAP---LSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDIM 492
            LR +F I DLGE+ + LG  + RDR ART    Q  Y  ++ +RF      + P++T   P   LS A  PQ  AE A MR IPYREAVG+LM+ +  TRPD+ +    L++F DNPG  HW+AV +  +YL  T  L +TYG    D++
Sbjct: 1254 LRKAFGISDLGEIHWILGFAVERDRTARTLALSQTSYINSIIQRFGF--EDLKPLTTPMDPNTTLSSAQSPQTTAEAAAMRDIPYREAVGSLMYASLGTRPDITYAVSFLSRFSDNPGRAHWEAVKRVFRYLSGTKDLKLTYGAQGLDLV 1401          
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 120 bits (302), Expect = 3.340e-29
Identity = 64/144 (44.44%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   64 FPIMDLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAERFEIW--KTSVIPISTGKAPLSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDI 489
            +P+ DLGEVS+ LG  + RDR+ART    Q  Y  ++  RF     K S IP+      L+K+  P + A+IA MR IPYREA+G+LM+ A  TRPD+ F   TLA+F  NPG  HW+AV +  +YL  T +L + YGG    +
Sbjct:  169 YPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGL 311          
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 121 bits (303), Expect = 3.630e-29
Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = 1
Query:   13 SETKQDEHQALEDLRSSFPIMDLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAERFEIWKTSVIPISTGKA-PLSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDIMP 495
            ++T+ DE + L  + + F I +LG V + LG  I  DR  R    +Q HY +T+ ERF       +     ++  LSKA GP++D + AEM   PYR  +G L +VA  TRPD+ F    L++F +NPGP HW A ++ L+YLK T   G++YGG  E+  P
Sbjct:  198 TQTRVDEVKKL--IAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTP 357          
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A8H5M255_9AGAR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5M255_9AGAR)

HSP 1 Score: 119 bits (297), Expect = 3.720e-29
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 1
Query:   70 IMDLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAER--FEIWKTSVIPISTGKAPLSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDIM 492
            I DLGE+ + LG  I RDR  RT    Q+ Y  ++  R  F+  K   IP+ T  A LS A  P   AE A+MR +PY EAVG+LM+ A  TRPD+ F   T+++F   PGP HW+AV +  +YLK +  L + YGG  ++++
Sbjct:   58 ITDLGELHWLLGIEIKRDRDRRTISLSQRSYLDSILRRYGFQDLKPVSIPMDTN-ARLSSAQSPATTAEFAQMRDVPYLEAVGSLMYAALGTRPDIAFAVQTVSRFSKKPGPAHWEAVKRIFRYLKGSTELWLVYGGNQKELV 199          
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A4S4LBP1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LBP1_9AGAM)

HSP 1 Score: 117 bits (294), Expect = 1.050e-28
Identity = 60/158 (37.97%), Postives = 90/158 (56.96%), Query Frame = 1
Query:    1 LLVLSETKQDEHQALEDLRSSFPIMDLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAERFEIWKTSVI--PISTGKAPLSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTY 468
            + + +++K  +    E+L   F + DLG  S+ LG  + RDR  R     Q+ Y   + ERFE+   + +  P+  G   LSKA  P++  EIA M+ +PYR+ VGALM++A  TRPD+ +    LA+F  NPGP HWKA     +YL+ T  + +TY
Sbjct:  141 MTIAAKSKDQDLFVKEELEKHFKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAKHLCRYLQGTKDMKLTY 297          
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A8H7C558_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7C558_AGABI)

HSP 1 Score: 117 bits (293), Expect = 1.100e-28
Identity = 66/168 (39.29%), Postives = 91/168 (54.17%), Query Frame = 1
Query:    1 LLVLSETKQDEHQALEDLRSSFPIMDLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAERFEIWKTSVIPISTGKAP---LSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDIMP 495
            +L  S T+  E  A  +L  S+ + DLG+ ++ LG  I RD         Q+ Y + + ERF +    V P ST   P   LS    PQ + E  EM+ +PYREA+G+LMW+   TRPDL F  + L++F +NPG +HW A+   L YLK T   G+TY     DI P
Sbjct:   73 ILGASSTENGESLAKLELGRSYELKDLGQANFILGMKIERDEATGDITLSQRAYCERILERFHM--QDVNPRSTPLKPHIVLSTDDMPQTEQEKLEMKNVPYREALGSLMWLQVATRPDLSFAVNLLSRFANNPGRKHWDALKHTLAYLKGTVHYGITYS-RNSDIRP 237          
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 120 bits (302), Expect = 1.270e-28
Identity = 64/144 (44.44%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   64 FPIMDLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAERFEIW--KTSVIPISTGKAPLSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDI 489
            +P+ DLGEVS+ LG  + RDR+ART    Q  Y  ++  RF     K S IP+      L+K+  P + A+IA MR IPYREA+G+LM+ A  TRPD+ F   TLA+F  NPG  HW+AV +  +YL  T +L + YGG    +
Sbjct: 1186 YPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGL 1328          
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A2G8SUK6_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SUK6_9APHY)

HSP 1 Score: 120 bits (302), Expect = 1.270e-28
Identity = 61/150 (40.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   52 LRSSFPIMDLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAERFEIWKTSVIPISTGKAP---LSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDIM 492
            LR +F I D GE+ + LG  + RDR ART    Q  Y + +  RF +      P+ST   P   L+    P+  AE+AEMR +PYREAVG+L + +  TRPD+ +    L++F +NPG  HW+A  +  +YL  T SL +TYGG   D++
Sbjct: 1221 LREAFAISDEGEIHWILGFAVIRDRSARTLSLSQTSYIEAIVRRFGL--EDAKPLSTPMDPHVQLTAEQSPKTTAEVAEMRNVPYREAVGSLQYASLGTRPDITYAVSVLSRFLENPGRAHWEACKRVFRYLAGTKSLRLTYGGEQRDLV 1368          
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI)

HSP 1 Score: 116 bits (290), Expect = 1.370e-28
Identity = 62/141 (43.97%), Postives = 82/141 (58.16%), Query Frame = 1
Query:   76 DLGEVSYYLGCHITRDRKARTARFDQQHYAQTVAERFEIWKTSVIPISTGKAP---LSKAGGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDI 489
            DLG VS+ LG  I+RD +A T    Q  Y   +  RF    T + P+ST   P   LSK   P++ AE+A MR +PYREA+G LM+ A  T+PD+VF   TLA+F  NPG  HW AV +  +YL  T +L   YGG   ++
Sbjct:    3 DLGPVSWLLGIKISRDLEAGTFSLSQHAYIDALLARFNF--TDLKPMSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGVLMYAALGTQPDIVFAVSTLAQFAQNPGQPHWDAVKRVFRYLLGTRTLSRVYGGEKREL 141          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1081.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S4K4A0_9AGAM1.350e-2941.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H4R8_9APHY1.460e-2943.33Uncharacterized protein n=2 Tax=Sparassis crispa T... [more]
A0A4S4K468_9APHY3.340e-2944.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL3.630e-2939.51Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A8H5M255_9AGAR3.720e-2942.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4LBP1_9AGAM1.050e-2837.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7C558_AGABI1.100e-2839.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6PCF8_9APHY1.270e-2844.44Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A2G8SUK6_9APHY1.270e-2840.67Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A060S8R4_PYCCI1.370e-2843.97Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1081contigA-nodosum_M_contig1081:17969..18466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size498
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.98e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size498
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.2418501-CDS-A-nodosum_M_contig1081:17968..184661680866468.2418501-CDS-A-nodosum_M_contig1081:17968..18466Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1081 17969..18466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1081.2.1prot_A-nodosum_M_contig1081.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1081 17969..18466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1081.2.1

>prot_A-nodosum_M_contig1081.2.1 ID=prot_A-nodosum_M_contig1081.2.1|Name=mRNA_A-nodosum_M_contig1081.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=166bp
LLVLSETKQDEHQALEDLRSSFPIMDLGEVSYYLGCHITRDRKARTARFD
QQHYAQTVAERFEIWKTSVIPISTGKAPLSKAGGPQNDAEIAEMRGIPYR
EAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTA
SLGVTYGGATEDIMP*
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mRNA from alignment at A-nodosum_M_contig1081:17969..18466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1081.2.1 ID=mRNA_A-nodosum_M_contig1081.2.1|Name=mRNA_A-nodosum_M_contig1081.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:17969..18466- (Ascophyllum nodosum dioecious)
CTACTAGTGCTGAGCGAAACGAAGCAGGACGAGCATCAGGCGCTGGAAGA CCTTCGATCCAGCTTCCCCATCATGGATCTAGGGGAGGTCTCGTACTACC TGGGATGTCACATTACTCGGGACCGCAAGGCGAGGACGGCGAGGTTCGAT CAGCAGCATTACGCGCAGACGGTAGCCGAGCGATTCGAAATTTGGAAGAC CAGCGTAATCCCTATTTCTACGGGGAAAGCGCCACTTTCGAAGGCAGGCG GGCCGCAAAACGACGCTGAGATCGCAGAGATGCGCGGCATCCCGTATCGC GAGGCAGTGGGGGCACTAATGTGGGTAGCCAACATGACTCGGCCTGACCT AGTTTTTACCGCGCACACGCTCGCCAAGTTTGGTGACAACCCTGGGCCCG AGCACTGGAAGGCAGTGATGAAAGCGCTACAGTACCTTAAACGAACGGCG AGCCTAGGGGTAACATATGGAGGCGCGACGGAGGACATCATGCCCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1081:17969..18466-

>mRNA_A-nodosum_M_contig1081.2.1 ID=mRNA_A-nodosum_M_contig1081.2.1|Name=mRNA_A-nodosum_M_contig1081.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:17969..18466- (Ascophyllum nodosum dioecious)
CTACTAGTGCTGAGCGAAACGAAGCAGGACGAGCATCAGGCGCTGGAAGA
CCTTCGATCCAGCTTCCCCATCATGGATCTAGGGGAGGTCTCGTACTACC
TGGGATGTCACATTACTCGGGACCGCAAGGCGAGGACGGCGAGGTTCGAT
CAGCAGCATTACGCGCAGACGGTAGCCGAGCGATTCGAAATTTGGAAGAC
CAGCGTAATCCCTATTTCTACGGGGAAAGCGCCACTTTCGAAGGCAGGCG
GGCCGCAAAACGACGCTGAGATCGCAGAGATGCGCGGCATCCCGTATCGC
GAGGCAGTGGGGGCACTAATGTGGGTAGCCAACATGACTCGGCCTGACCT
AGTTTTTACCGCGCACACGCTCGCCAAGTTTGGTGACAACCCTGGGCCCG
AGCACTGGAAGGCAGTGATGAAAGCGCTACAGTACCTTAAACGAACGGCG
AGCCTAGGGGTAACATATGGAGGCGCGACGGAGGACATCATGCCCTGA
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