mRNA_A-nodosum_M_contig10801.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10801.1.1
Unique NamemRNA_A-nodosum_M_contig10801.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A484LZS7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LZS7_9ASTE)

HSP 1 Score: 65.1 bits (157), Expect = 5.120e-11
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            KEV + HL++ G +AFVHI +D R KL+ K+ E I  G+SEDE   YR+W+P+ R+V+ SR+V F E
Sbjct:   58 KEVSYKHLRVFGCRAFVHIPRDERSKLDKKTKECIFLGYSEDE-FGYRLWDPRDRKVIRSRDVVFYE 123          
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A0D3AGD1_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3AGD1_BRAOL)

HSP 1 Score: 62.0 bits (149), Expect = 5.920e-11
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            K+V +SHL++ G KAFVHI +D R KLE+KS + + +G+ +DE   YR ++P  R++V SR+V F+E
Sbjct:   23 KDVSYSHLRVFGCKAFVHIPKDERSKLEMKSRQCVFFGYGQDE-FGYRFYDPVERKLVRSRDVVFME 88          
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.120e-11
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHIQDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            K+    HL++IG+ AFVH++  + KL  ++W  IL G+S D    YRV+NP+++R+V SRNVTFIE
Sbjct:  206 KQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRA-YRVFNPRTKRIVHSRNVTFIE 270          
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A484LYF8_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LYF8_9ASTE)

HSP 1 Score: 64.3 bits (155), Expect = 8.390e-11
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            K+V + HL++ G +AFVHI +D R KL+ K+ E I  G+SEDE   YR+W+P+ R+V+ SR+V F E
Sbjct:   58 KDVSYKHLRVFGCRAFVHIHRDERSKLDKKTKECIFLGYSEDE-FGYRLWDPRDRKVIRSRDVVFFE 123          
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A484L1C1_9ASTE (gag_pre-integrs domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L1C1_9ASTE)

HSP 1 Score: 63.5 bits (153), Expect = 3.410e-10
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            K+V + HL++ G +AFVHI +D R KL+ K+ E I  G+SEDE   YR+W+P+ R+V+ SR+V F E
Sbjct:  507 KDVSYKHLRVFGFRAFVHIPRDERSKLDKKTKECIFLGYSEDE-FGYRLWDPRDRKVIRSRDVVFFE 572          
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 6.430e-10
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHIQDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            K+    HL++IG+ AFVH++  + KL  ++W  IL G+S +    YR++NP ++R+V SRNVTFIE
Sbjct:  688 KQASLRHLRVIGSSAFVHVETYKSKLANRAWPGILVGYSPNSNA-YRIYNPHTKRIVPSRNVTFIE 752          
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.770e-10
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHIQD-ARKLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            K+ + S L+IIG++AFVHI+    KL+ K+WE +L G+++D   F R++N  + R+  +RNVTFIE
Sbjct:  458 KQANLSFLRIIGSRAFVHIEGHTTKLQAKAWEGVLVGYNDDSPTF-RIYNRTTGRITSTRNVTFIE 522          
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A6D2HWF4_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HWF4_9BRAS)

HSP 1 Score: 61.6 bits (148), Expect = 1.610e-9
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            ++V+++HLK+ G +AFVHI +D R KL+ K+ E I  G S DE   YR+W+PK+R+++ SR+V F E
Sbjct:   71 RKVNYNHLKVFGCRAFVHIPKDERAKLDSKTKECIYLGSSRDE-FGYRLWDPKNRKIIRSRDVVFFE 136          
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A5N5KU00_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KU00_9ROSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.550e-9
Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            K+V ++HL++ G +AFVH+ +D R KL+ K+ + I  G SED+   YR+W+PK +++V SR+V F E
Sbjct:   22 KDVSYAHLRVFGCRAFVHVPRDERSKLDSKTKQCIFLG-SEDDEFGYRLWDPKEKKIVRSRDVIFFE 87          
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A5N5MC61_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5MC61_9ROSI)

HSP 1 Score: 60.1 bits (144), Expect = 5.700e-9
Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
            K+V ++HL++ G +AFVH+ +D R KL+ K+ + I  G SED+   YR+W+PK +++V SR+V F E
Sbjct:  521 KDVSYTHLRVFGCRAFVHVPRDERSKLDSKTKQCIFLG-SEDDEFGYRLWDPKEKKIVRSRDVIFFE 586          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A484LZS7_9ASTE5.120e-1150.75Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A0D3AGD1_BRAOL5.920e-1147.76Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
A0A6H5KCZ9_9PHAE7.120e-1148.48Integrase catalytic domain-containing protein (Fra... [more]
A0A484LYF8_9ASTE8.390e-1149.25Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484L1C1_9ASTE3.410e-1049.25gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KY84_9PHAE6.430e-1045.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAG6_9PHAE8.770e-1045.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HWF4_9BRAS1.610e-947.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5KU00_9ROSI4.550e-944.78Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A5N5MC61_9ROSI5.700e-944.78Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10801contigA-nodosum_M_contig10801:10224..10418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3712.Bo20950s010.1
PFAMsRVT_2,gag_pre-integrs,rve
Model size195
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.71e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37NGF@33090|Viridiplantae,3GGSM@35493|Streptophyta
Descriptiontransposition, RNA-mediated
Cds size195
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866467.4334466-CDS-A-nodosum_M_contig10801:10223..104181680866467.4334466-CDS-A-nodosum_M_contig10801:10223..10418Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10801 10224..10418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10801.1.1prot_A-nodosum_M_contig10801.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10801 10224..10418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10801.1.1

>prot_A-nodosum_M_contig10801.1.1 ID=prot_A-nodosum_M_contig10801.1.1|Name=mRNA_A-nodosum_M_contig10801.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
KEVDWSHLKIIGAKAFVHIQDARKLELKSWERILYGFSEDEALFYRVWNP
KSRRVVDSRNVTFIE
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mRNA from alignment at A-nodosum_M_contig10801:10224..10418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10801.1.1 ID=mRNA_A-nodosum_M_contig10801.1.1|Name=mRNA_A-nodosum_M_contig10801.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig10801:10224..10418- (Ascophyllum nodosum dioecious)
AAGGAAGTCGATTGGTCGCATCTCAAGATCATCGGCGCTAAAGCTTTCGT CCACATCCAAGATGCCAGGAAGCTGGAACTCAAGTCCTGGGAAAGAATAC TGTACGGCTTTAGTGAGGACGAAGCGCTCTTCTACCGGGTCTGGAACCCG AAATCTCGCAGGGTGGTGGACAGCAGGAACGTGACGTTCATCGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10801:10224..10418-

>mRNA_A-nodosum_M_contig10801.1.1 ID=mRNA_A-nodosum_M_contig10801.1.1|Name=mRNA_A-nodosum_M_contig10801.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig10801:10224..10418- (Ascophyllum nodosum dioecious)
AAGGAAGTCGATTGGTCGCATCTCAAGATCATCGGCGCTAAAGCTTTCGT
CCACATCCAAGATGCCAGGAAGCTGGAACTCAAGTCCTGGGAAAGAATAC
TGTACGGCTTTAGTGAGGACGAAGCGCTCTTCTACCGGGTCTGGAACCCG
AAATCTCGCAGGGTGGTGGACAGCAGGAACGTGACGTTCATCGAG
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