mRNA_A-nodosum_M_contig1080.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_A-nodosum_M_contig1080.7.1
Unique Name	mRNA_A-nodosum_M_contig1080.7.1
Type	mRNA
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig1080.7.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig1080.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig1080	contig	A-nodosum_M_contig1080:204078..211024 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	229
Hectar predicted targeting category	other localisation
Exons	2
Cds size	228

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680866467.2809505-CDS-A-nodosum_M_contig1080:204078..204267	1680866467.2809505-CDS-A-nodosum_M_contig1080:204078..204267	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig1080 204079..204267 -
1680866467.2934036-CDS-A-nodosum_M_contig1080:210985..211024	1680866467.2934036-CDS-A-nodosum_M_contig1080:210985..211024	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig1080 210986..211024 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig1080.7.1	prot_A-nodosum_M_contig1080.7.1	Ascophyllum nodosum dioecious	polypeptide	A-nodosum_M_contig1080 204079..211024 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at A-nodosum_M_contig1080:204078..211024-
coding sequence from alignment at A-nodosum_M_contig1080:204078..211024-

protein sequence of mRNA_A-nodosum_M_contig1080.7.1

>prot_A-nodosum_M_contig1080.7.1 ID=prot_A-nodosum_M_contig1080.7.1|Name=mRNA_A-nodosum_M_contig1080.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=76bp
STCAAKSGEACGMVAASNASCTTSSTISASEDSDDNSVSSCLAPNDIPSG
INIDQRTLKEVAGRHPALDCGQPSLN

mRNA from alignment at A-nodosum_M_contig1080:204078..211024-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_A-nodosum_M_contig1080.7.1 ID=mRNA_A-nodosum_M_contig1080.7.1|Name=mRNA_A-nodosum_M_contig1080.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6947bp|location=Sequence derived from alignment at A-nodosum_M_contig1080:204078..211024- (Ascophyllum nodosum dioecious)
AGTACATGCGCTGCTAAGAGCGGCGAAGCCTGTGGTATGGTGAGTATGGT
TCAGTCGTCCCTTCAACAAGAGATACAGACTACAGCAGTAGCACGACAAA
ATCAAAACAGTACGTCACTTCTCTCCTTGTAAATATTGTATAAATTTATA
TGTAATAGATAAGGTGCGTACAAACTATGGAACAGTTCTGCATTACAGTA
TACCAGGTAAGTACTACAGACAGCGCAGGCATTCTGCTGCCCTATAGCTT
TCCAGTGTATGTGTGTGTTTGTGTTTTCTTCCCATTCATTCTGGACACCA
AGTTCGTTGGACGTACCAGCCGGGGTCACTCGGGAGGAAGGTCACACAGT
ATTTTTCATCCACCTTCCTTATATATACTGGTATTATATATGTATATGTT
GTGAGAAAAATCCCGAACTCGCGTCCCAACGTGTCAAGGTTATCACAGGA
GGTTACCTCTGAGCTACCGGGGCGACAGTACGCAACTGTATTTACAGTAC
AACAGCCGCAGCTTTCCTTCGTTGTACCGGTTACGATTGACTTGTTGTGC
AAGACAAGGTTGACGTGTCCTGCTCGAGTCCAAAGAAAAATACAAAATAC
GGACGTATCCAAACCTTCTGAGCATGTTATCTGTATGTATTTGTACGTGG
GAATTAGACTATGTCGAAACGCTCGGGTATGCCGCTCTGCTGGTGGTCGA
CGCGGTGATTACGCTCATCTTGAAGCTGTACTACTTCGAGTAAACTGTTT
AAGGCTGTAGTAAAGTACGTAGGAGGTTTCTGGCCGATAGGCGTGTTTTT
TGCTGGTTATCGTTCGTTTTTTTTGTTCCTAGTCGACAAACTCAGACGAA
AGCACGCCTTTAAACACGCGAATAAAAAAAAAACTCGCGAGGATTGCTGC
ATTGTACAAGTAACTTGTGTTCAGATTTTTCCAAACACATCCTGAAGTAA
GAGTACCCTGGTATAGAGCACGGAGTCGCGTGAGTTGCACACCCACCGAA
CCATAGCGGACGGAAAATATCCCCGAAGCGTGCCCGCAACAAATGCATTC
AGATTTTTCTTTAAACCCCAAGGTGCCCCGATAACAGGCGGGAGTTGAGG
GTACACGCGACAGTACAATATACGTATACATGTATCTGTGGTCATGACAT
ACAGCAGAGTACAAATCAACTGCGTAAGGTTGCCAATCCTGTTTATGGTC
AGCTGAACAGGGGAAAATTTCCTTGCCCCCGTTCGCGCCTGAGAATTTGG
TTTCACGAGACAGGTTTGGCTGTACCGTCTCTTGTCAGCCTGCTCATTCT
CTATACTAACGCTGAATCTGGTGCTTGGTATTCTTCCCGAATTCCGGGGC
GGCGTCCATATATTTTTACCAGCACCACACACCATCGGGTCAGTCCCGAG
TTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGTCC
GTTGGCACAGGGCCAGTAGTCCTCAAGGTAGTTCGAGTAACGGGTGCTGC
CCTTGCATCACCATGGACCAAATGTTAATGTGCTCCTCTCTTTTCCCACA
CCCACTATTGATATACAGTGAAAATGTCCAAATTATCGGGTGTACAAAGT
ATACAAGTATCAAAATATTAGTACTACTGCTGTAGTCAACTGCTGTACTG
TTTGTGGAACTGTTTTTGTTTTTACCCCCGACTTATAGAGTACAATATCG
TCATACGTTGTATTTCAAAACATACCTGGTAGTTATTATTGCTGTACTGA
CTGTGGATCTGTTTTCCCCCTCCCAACTTCTGTATGTACATGTGTGTAAA
GGTTTAGAGTTTAGAGTTGGGTACGAAGCATTTTACGGGAATGATCATGG
AAAAAGAAAGCATATACATCACTGACGGAATTGAGAATGCCAGTCTCTCC
TTACATTACATAGGGATTTAGGGTGACAGCCTCTCGAATGTAGGCCTTTT
AAATATCGACAATACAACAAGCGTCAATCGGGAGAAAATGTACCTGGTTT
TTCTTTCCATGTCTGCTGCATGTGTGTTGTGTGTGTTTTCTTCCCATTCA
TTCTGGACATCAAATTCGTTGGACGTACCAGCCGGGGTCACACAGGAGGA
AGGTCACACAGGATTTCTCATCCACCTTCTTTCTGCGGTGCGTGCCTTAA
TTTTTCTCGCGAGAAGGAATCAGCCATTCCTTTCCCTCATCGACCGTGAA
GTCATGGCAAACAATATTTAAAATAGTATATTAATAATAGTGGACAGAAC
AGGTATGTTGTCCATATTAAAACTAGTATATTAGTAGTGGAAATAACGGG
TATGTTGTACACTCGGCATTACCAATAATGGGTCACTCTCGATGTCATCT
ATCTTCTTCATGGCACAAGAGTCACTAGAGAGAAGATTGCCCTGGTTTCT
CCTCTAAAATGCCCTGCATGGCAACCCATATTAAACCCGGTATACTTAAA
GCTGGAAAACCGGTTATTTGTATATGCGGCATCGCAAAATTCGAGACCGG
CGCGTTGTATATAACGTACAACTATATCATAAATGACTCGAGCCGGATGT
AAGGTATCTTTCTTATTGAGGGCGTAAGCGTCATTAGGGATAAGATTGCC
CCTGTTTGGCGCGTCAAAGATGATCCCTTCGGGTCCCGGGTGGACCAATT
ACCGCACAAGACGGTCTTTTGACAAAAATGTTAACCATATCTGTTGTGCA
GCATTTTTGAAGCCCGTTTCTTTTAAGGCGCATTCACAACACCACAAGGG
TTCGATATACCACTGCTGTGGGTGCCTAGGGGACATGTGGCGCGCGCGAG
TGCTGTTTTGGGGGGCACCCTTACAGGATGCGGACCAATTGAGAGTTTTT
TTGTCTACAGGTAACAGTTGTTGTTTTCTTCACATTAACCGATCGGGCCT
CAACCATACCCAGTAATACACGTGGTTGCCAATCCGGTACGTGGTCTGCT
GGACAGTAGGGACTTTTCTGATCACAATGGTCAACTTTAATCCGTCCATG
CCACACCCGCGAAGGAGACAGGAATTTTAATCGCCAGAGTATTGTACTAG
GTTCAATATTCTGCCTTCTCGGTACACTATCTCCACGCCGCCAAGCACCA
CCGGCGCTCTAAAGGTCCAGTGCAGGATTTCCTCCAATTTGTGGTTTAGC
CGCAAGGGCTTATTTTTCCGACGACGAATTTGAGCGACACAGAGCATGTC
CAAGCATAAAAACTTCAGCCGACGAGCCCTCGTATGTATCTTAACACACA
CGCACCTTGAGGGGCACCGCTCTGTCGATTTGGGCAATCACCCTCCCAGC
TTTGTCCGCGCGCGCCGCGAGCAGGGGTGTTTGTGGGAATATGGCGGCTC
ACAATTGGTACAGACATTGTACCGCATGGAATTGTTTTCGTAAAAAATAT
GAAACTGGTTTCATGAATGGTTGAAAAGCGGGGATACGGGGATGCTCAAA
CTTTACTACAACCTTAAAGAAAAATCAGAACGCACCTAGACCTTCTGAGC
ATCCTCCAGTTAGGGGGGGGGAAATGTCAAAACGTGTATTTGTTGTTGTT
TTCTTCACATTAACCGATCGGGCCTCAACCATACCCAGTAATATAGAGCT
ACCTTGTTGCCAATCCGGTACGTGGTCTGCTGGACAGAAAAAGATCAGAG
GAACATCTACCAAGCTCCAATGAGAGCAAAATAAAAACACAAGCAATTGT
ATTTGCAGCCTTTGATCCCACCTAAACGTTTTGACATTTTTGCCCCCCTA
ACTGGGGAATGCTCAGAAGGTCTAGGTGCGTTCTGATTTTTCTTTTTAAA
ACGACAAAGAGAAAGGAACAAGAATAACAAAATATACATGCCAGAAAAAG
ATACGAAGGGCACTCGATAGAGAGAGTTTGGCATAGTGCCAGCCGTGAGC
CATCCGATACCCTCCCCAGATCGCAACCATGCACCCAAACGCGTAGCATC
TACCACATTCCGTACTCTCAGGGTTTCAGTTTTCACTAACGGCACAGTCG
ACGTCGCTTAGGGAGTCCTTGGGTTGGTCCAATCAACGCGGTTCGAAAAC
GTCTCAAGCTTGCTACAGTCACCCCAGGTGCAACCTCAACCTTGTCGGCC
TCTTCCGCTTCTCTCTTCTTCTGCCGTTGATTGGACGCGTTTTCTTCTTC
CCTCACCCACGCGGCCATAAACCTACAACTCACTTCGTGTACTATTTTAT
ACCACGCCCCAGGGTCAAGTGCGGCGGTTCTCCAGTACCCCGTGACGCCA
AATAGCCGAAGATCATCTGCCACGCAGTCCGTCCACTCTTTCTCCTTCCC
CCCCGTCCCACGTTTCCCCGCGTTCTCGAGCTCTCCCGACATGACCCTCT
CGGGTAACCTGTGGTCACCCATGCGGAGTAGCGCCCCCGCGTTCCAGTAC
CTGGTATCGAATTTCCATGGAATTCTTTCTAATTCCCAGGGGAAACTGTT
GAAACTGAGAAACGGCTCTTCGGGATATTACTGTATAACAGAAGCACTCT
ATCCACATCATCTACGTCCACCAGTTTTTGTTTTTTTCGAAAAATCTGAA
CGCATCCAAACACTTTCCGAGCACCCACTCGTCGCCCGAGTGGTCTAGTA
GGTAAGCACGTACACCTGCTAGCGCGGAATTCTTGAGTTCGATTCTTGTG
AAAAGAAGTATTTGTATAAACTAACTGGCTATTAGTCCGTAGCGGAAAGC
GTGAGAACGTGATTAGTAAGTAAAGTTCACACCATTGGTTGACGAGTTAT
AAGAGTACTGAACTTGCATCGCAATAAAAAATCATAAGGCGTGAACCGGG
GAGAGGTGGGAAGATCCTTCGTGACCACAGGCAGGATGGCAACGTTGCAG
CTGTAGATAGGATTGGTAACCTAGCACGTTGAAGTGAGATAGATAAAAAC
AAACAAACAAACAAACAAAACCTTGCGGGGGGAATTGTGTAGAAACATTT
GGTTGGGCAGATATCACCCGACTGTTTCTACGTGAAATCCAGCCGGCTTC
CCCGATGATACAGTAGTCACATACATTCATAATATCGAGTAGAAACACAG
CGTTATACTTCGTGAGCTCTACGACCAGTCGAAAGTGGCGCTCCCCATCA
AGACCCGGATGGTAAAGGCCGAGGCAATCGAGGCTCTACTGTAGGGATGC
AATACGTGGACCCTTCCCTTCGCCAGGAACACTAACTGCTCCGAAATCGG
CACCGTACACCAGGGGTCTTGTTTCGCATCAACGGGGCTCACAGCGCCAG
AGACCAGACAATCGAATGACTTTGCCGTACAATCTTGCACACATATCCAG
GTCCATTGTATGTTTTTGCCTCTGTTTTGATGTACGTGCATGTCGATTTA
GGTGATGGAAACGTAGAACTTTAGCAGGTTGGTATGCATCCGTCAGTTAA
TCCTTGATCGGGCAGCGGCTCATTGATGTTAACATTGTAATGATTTTAAC
AATGTAACATTGTAATGAGACTTGTGCACGCAAGATTGAGTGGCGTATTA
CATTGGGACGGTGATGGATTACATTCTGCGACAGGCAAGGGACCCGGGCG
CCCTATACTTGAGTACTATACGCACGATTCTGTCTGTACCGCACATGCCG
ACTGTACCAATAATGGGTCTGAGAAAAAGAAGAGCACACGTTCATTTGAT
TCATGGGGTGTTACCTGAAAAGGTAGCGCCTGTTACCAGGACTGTCTTGA
GGTCTACTGGCCCTGCGCCGGCAGACTCTCGGTGGTGAACGGCGTCGGCA
CGCAACTGCGTGACCTGATAAACACGGAACTTACTCGATGGCGGTTGACG
GTATAGATGGGTATAGATGGGCACCTAACACCGTCGCGGAAAGCGGGGGG
ATCCCGTGAGTATCGTACGTATCGGAGTCTTGGCACACCCCCTAGACTGA
CTTTCCAGGCTCGATTGCTCCACAGCCAAGTGGATGTGAACACCGACCGA
TATGTCTAAAGAAAGCTCTCGACAAGATATTTCGAAAACCGCCCTTTTCG
GCATTGGCACCCACATGGTTGTGGAGCAATCGAGCCTGGAAAGTCAGTCT
AGGGGGTGTGCCAAGACAGATACTTACAGTAAGCACCAGATTCAGCCTGG
GTGTGAGAATAAACGGGCTGACGCGGGACGGGACAGCCGAACCTGTCTTG
TGAGGACAATTTATCAGGAGCAAAAGGGGCAGCAACTTCCACCTTTGGCT
TTGGCTGCTGACTCACGAAGTGACCCCGGAGGTTGAACTGGCCGGAGATT
TTACGTAGCGGCGATAGCTGCGCATACGCAGTTCGACCTTCCTTCCGATG
CGGATAGATAACGATGCCACGGCTTCCATCGCTGAGGTTTGCTCACGTTT
ATACGGACAGTACCCTTTAAGTCCCAGGTTCCTGATCCACGATCTGGTCC
GTGATCTCGAACGGGGACTTTATATCGACGCATAATTAACATTCTGGTAC
ACTAATACGTGACTCGAAATGGAAAAATGGACTTGGTCCGCTATCCAGCG
ACAGAATCTGTCCGTTATCGCCTATTTTAGCCGGAAAGGGTATAAAATGA
TAAGGCCACCCTTTGATTTTATCTGGCACGAAACTGGAAGTCTTACGTAT
TGCCTGGTGGGCGTTCATCCGTGCCGCATCCTCACCGATGTCGAAAGTAT
TGATAAACGGATACCCACAAGAGTTACATCTTTAAAAGTCATCCGTCTCA
CCGGACACACTGTACGTTGTGCCGCTCTGTACTGTACCATTCTGTATCGT
ACTGCAGGTCGCCGCGAGTAACGCCAGCTGTACGACGTCGTCAACGATCA
GCGCTTCTGAGGACAGCGACGACAACAGCGTTTCCAGTTGCCTGGCGCCG
AACGACATACCCAGCGGTATCAATATCGATCAGCGGACCCTTAAAGAAGT
GGCCGGTCGGCACCCCGCGTTGGACTGTGGCCAGCCTAGTCTTAATA

Coding sequence (CDS) from alignment at A-nodosum_M_contig1080:204078..211024-

>mRNA_A-nodosum_M_contig1080.7.1 ID=mRNA_A-nodosum_M_contig1080.7.1|Name=mRNA_A-nodosum_M_contig1080.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at A-nodosum_M_contig1080:204078..211024- (Ascophyllum nodosum dioecious)
AGTACATGCGCTGCTAAGAGCGGCGAAGCCTGTGGTATGGTCGCCGCGAG
TAACGCCAGCTGTACGACGTCGTCAACGATCAGCGCTTCTGAGGACAGCG
ACGACAACAGCGTTTCCAGTTGCCTGGCGCCGAACGACATACCCAGCGGT
ATCAATATCGATCAGCGGACCCTTAAAGAAGTGGCCGGTCGGCACCCCGC
GTTGGACTGTGGCCAGCCTAGTCTTAAT