mRNA_A-nodosum_M_contig1080.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1080.1.1
Unique NamemRNA_A-nodosum_M_contig1080.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1080.1.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 3.260e-59
Identity = 129/362 (35.64%), Postives = 187/362 (51.66%), Query Frame = 1 
Query:  190 CPPCDFLFSKLEPSENGGKLVQNVKIQERGEPKSGTGFMFSWAGGTLVRTCRYLQSAFGEKSCVVEDEPVRASRYGGPAISNYTLI--------FEP-------SLGGDDAR-CSCDSIERVTIAISRFRKHTLPVSPTCLYAHPNGVDARTLLSPDGKHAGGYACSFADGSAVTNYDDLWRCVHEAACLITDDWHQMAIFRDPRPVAASAFYHL---HRNRKLSFYSGTVDDFVAAVLPTMSQWIAIRHMLFEGILQAKSTSFWYQDALEDPKGWHYRWLQTIGLQLPLSLMEDMVNAALVGDFGVEGKSRDRHPGVKKHEDQAVQAARKFEDEVSPQLLAIADDALRQWLPHVLLTRFHV 1218
            CPPC+ +F KL    NG +  Q+V++Q RGEPKSGT FMF WA   L+ TC  L   +GE +C        + R   P      L+        F+P       S GG  A  C C ++++V+I +S   KH LPV P+C + H + V      +P+ K      C+  +G  V NY D   C+ +  C I DD  QM I RDPR VA S+F+HL   H          +VD FV  +LPT+  +I +R+++    L  K+  F Y ++L DP  WH RWL ++GL  P  ++    N +L  ++G  GK  D+HPG K+  ++     R +EDE+S  +    +   R+WLP VLL +F +
Sbjct:   83 CPPCETMFGKL----NGAQ--QHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNV------TPENK-----GCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEK-----RTWEDEISHDVAEQLEGICREWLPPVLLEKFGI 422
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BLAST of mRNA_A-nodosum_M_contig1080.1.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.210e-36
Identity = 89/246 (36.18%), Postives = 127/246 (51.63%), Query Frame = 1 
Query:  496 IERVTIAISRFRKHTLPVSPTCLYAHPNGVDARTLLSPDGKHAGGYACSFADGSAVTNYDDLWRCVHEAACLITDDWHQMAIFRDPRPVAASAFYH-LHRNRKLSFYSGTVDDFVAAVLPTMSQWIAIRHMLFEGILQAKSTSFWYQDALEDPKGWHYRWLQTIGLQLPLSLMEDMV--NAALVGDFGVEGKSRDRHPGVKKHEDQAVQAARKFEDEVSPQLLAIADDALRQWLPHVLLTRFHVTP 1224
            + RV I+IS   KH LPV+ +C ++H +G    T+   DG       C   DG  V    DLW C+ +  C ITD+  Q    RDPR VA S ++H +H++        ++D  V  +LP +  +  +RH+LF G+L  ++  FWY+  +EDP  WHYRW    GL LP   ++ MV  N A         K  + HPG  +  D      R ++DEVSP +    D  LR+WLP VLL R+ + P
Sbjct:    2 LRRVEISISTVDKHRLPVNESCPWSHGSG----TVHEGDG-------CWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVAENQA--------HKHLNPHPGGAETSDN-----RTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIPP 223
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BLAST of mRNA_A-nodosum_M_contig1080.1.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 8.960e-29
Identity = 74/177 (41.81%), Postives = 100/177 (56.50%), Query Frame = 1 
Query:  706 CLITDDWHQMAIFRDPRPVAASAFYHLHRNRKLSFYSGTV------DDFVAAVLPTMSQWIAIRHMLFEGILQAKSTSFWYQDALEDPKGWHYRWLQTIGLQLPLSLMEDMVNAALVGDFGVEGKSRDRHPGVKKHEDQAVQAARKFEDEVSPQLLAIADDALRQWLPHVLLTRFHV 1218
            CL+ DD  Q A+ RDPR VA S ++++  +   +FYS  V      D+ V  +LP + Q+  IRH+LF+G L  KS  FWY+DA+ DP GWHYRW    G  LP S ++D ++A L      +   RD HPG      Q V + R +EDE+SP +    D  LR WLP VLL R  +
Sbjct:   24 CLL-DDSLQFAVLRDPRAVAVSTYFYVKSHP--AFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKD-IDATL--PEAQQKVKRDPHPGG-----QQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGI 189
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BLAST of mRNA_A-nodosum_M_contig1080.1.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.870e-15
Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 1 
Query:  886 LFEGILQAKSTSFWYQDALEDPKGWHYRWLQTIGLQLPLSLMEDMVNAALVGDFGVEGKSRDRHPGVKKHEDQAVQAARKFEDEVSPQLLAIADDALRQWLPHVLLTRFHVTP 1224
            +FEG+L  +S  FWY++ LEDP  WHYRW    GL LP + ++ MV          E    +RHPG  K       A R + DEVSP +    +  LR+WLP VLL RF V P
Sbjct:    1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMVAV------NQERLFFNRHPGGGKRT-----AKRTWRDEVSPGIHHDMESILRKWLPPVLLARFEVPP 102
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1080.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJE4_ECTSI3.260e-5935.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDV7_9PHAE1.210e-3636.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG38_9PHAE8.960e-2941.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF6_ECTSI1.870e-1542.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1080contigA-nodosum_M_contig1080:125878..129037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2265
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1191
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866467.3305347-UTR-A-nodosum_M_contig1080:125877..1269121680866467.3305347-UTR-A-nodosum_M_contig1080:125877..126912Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1080 125878..126912 -
1680866467.3737872-UTR-A-nodosum_M_contig1080:128998..1290371680866467.3737872-UTR-A-nodosum_M_contig1080:128998..129037Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1080 128999..129037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866467.3415039-CDS-A-nodosum_M_contig1080:126912..1276391680866467.3415039-CDS-A-nodosum_M_contig1080:126912..127639Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1080 126913..127639 -
1680866467.3545694-CDS-A-nodosum_M_contig1080:128218..1283571680866467.3545694-CDS-A-nodosum_M_contig1080:128218..128357Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1080 128219..128357 -
1680866467.3652549-CDS-A-nodosum_M_contig1080:128673..1289981680866467.3652549-CDS-A-nodosum_M_contig1080:128673..128998Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1080 128674..128998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1080.1.1prot_A-nodosum_M_contig1080.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1080 126913..128998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1080.1.1

>prot_A-nodosum_M_contig1080.1.1 ID=prot_A-nodosum_M_contig1080.1.1|Name=mRNA_A-nodosum_M_contig1080.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=397bp
MVRRGLSRGKLNLIALACVWLAFFHQALAYAQLKDADSIRGEVGSAEEVV
CPPCDFLFSKLEPSENGGKLVQNVKIQERGEPKSGTGFMFSWAGGTLVRT
CRYLQSAFGEKSCVVEDEPVRASRYGGPAISNYTLIFEPSLGGDDARCSC
DSIERVTIAISRFRKHTLPVSPTCLYAHPNGVDARTLLSPDGKHAGGYAC
SFADGSAVTNYDDLWRCVHEAACLITDDWHQMAIFRDPRPVAASAFYHLH
RNRKLSFYSGTVDDFVAAVLPTMSQWIAIRHMLFEGILQAKSTSFWYQDA
LEDPKGWHYRWLQTIGLQLPLSLMEDMVNAALVGDFGVEGKSRDRHPGVK
KHEDQAVQAARKFEDEVSPQLLAIADDALRQWLPHVLLTRFHVTPQ*
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mRNA from alignment at A-nodosum_M_contig1080:125878..129037-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1080.1.1 ID=mRNA_A-nodosum_M_contig1080.1.1|Name=mRNA_A-nodosum_M_contig1080.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3160bp|location=Sequence derived from alignment at A-nodosum_M_contig1080:125878..129037- (Ascophyllum nodosum dioecious)
CACAACAGATCATCGAGAAGCTGCGGTCGAAGAGACACCATGGTTCGAAG
GGGGCTGTCCCGGGGGAAACTCAATCTCATCGCTTTGGCTTGCGTTTGGC
TTGCTTTCTTCCACCAGGCTTTGGCGTATGCTCAATTGAAAGACGCCGAT
AGTATCAGGGGAGAGGTGGGCTCTGCGGAGGAGGTGGTCTGCCCCCCGTG
TGATTTCCTCTTTTCTAAGCTCGAGCCTAGCGAGAATGGGGGTAAGCTGG
TCCAAAATGTGAAGATTCAAGAGCGAGGAGAGCCGAAGAGCGGAACGGGC
TTTATGTTTTCGTGGGCCGGAGGGACACTCGTGCGAACCTGCCGTTACCT
GCAGTCGGCGTTTGGTGAGTATTGTACTACGGTGCCATAGAAGACATGTA
TGAGCAGTAAGGGATGCTAGAGGGGTTGCTTCACAATCATAGCACGCTCT
CGAGGCCGTCAGAGGTGGCAGCGAAACCCGAGGAATTCGACGGGCCACAG
TAAACAGCGTTCTGAATGAAGCATGCTGTTGTTTTGAGATAGGTAATTTG
TGTCGATAATCTAGCTCAGGAATAAGCTTCGTAACCTCGAAGAATCTTCT
CCGATCCGAAGCTGTAGTGTCTGCGCGGTTCGCAACTACATGAGCGGCCC
GCCTGCACCATGCGTTTGCAACGCGAATAGGCGAGAAGAGCTGTGTGGTT
GAAGATGAACCGGTACGAGCTTCTCGATATGGTGGCCCAGCGATCAGCAA
TTACACGCTAATTTTTGAGCCATCGTTGGGCGGTGACGATGCCAGATGCA
GCTGCGACTCTATAGAAAGGTAAGTGTCATCTTGTTAAACTCAGGCGTGT
GTCACACGAGCGTTTGCGTTAGGCTCCCGTGCCAGTCCGTTCGAGTTGAA
ATTATCGCCTGTGCACCCGTAAAAGGTGAGCCGTGTTTTCCACGAACAAT
AAAAGCACGTGTAAACGGGTTGAAGGGGTCTTAAAACGCATTCAAGCTCG
AAAGGGTAGCGGTTTCGCCGTGCGCGAAGCCCTTTGGATGGCTTGAGATC
CAGACGCTTTTGCTCCACGAGATGCGGGTAAAGTACTTGGACGTTGAAAA
ATCACACGTCCTGTTCGTTGTTGCGCGAGCTCTGCACCCACTCGATCGCA
GGTTCTTGCAAACGTTCTTGCCCCTCTGTATGGGCCACCTATTTTTCGTC
GCGATGAGGATACATGTGGAGGCGAGGTCTACTTTTGAGACTCGAGTCGT
GCAAGCGTTCCTGGAATGCGTGTGCCACCGCAGGCTTCGGCATGGGCTTG
GCACGCCCTTTCGATTTCTATCCCCCACCCTCAACAATCTCGTGGCGATA
GTTTCCCCCTCTTATCTTCATTTATTTGGTTTGTCCTCTCACTTCAAGGG
TAACTATCGCCATCTCACGGTTTCGGAAGCACACTCTGCCGGTGTCTCCC
ACGTGCCTGTACGCCCACCCCAACGGCGTTGATGCAAGGACCCTCCTCTC
CCCGGACGGCAAGCACGCCGGCGGTTACGCGTGCTCGTTCGCCGATGGTT
CGGCTGTGACGAACTACGATGATCTGTGGAGATGCGTGCACGAAGCAGCT
TGTCTTATCACAGACGACTGGCACCAAATGGCCATCTTCAGGGACCCAAG
ACCGGTTGCCGCGAGCGCATTTTACCACCTCCATCGAAATCGAAAGCTTT
CCTTTTACTCCGGCACGGTGGATGACTTTGTCGCCGCGGTGCTTCCAACG
ATGAGCCAATGGATCGCAATTCGGCACATGTTGTTTGAAGGCATCCTACA
GGCCAAATCAACGTCATTCTGGTACCAGGACGCGCTGGAGGATCCCAAGG
GGTGGCACTACCGATGGCTGCAAACGATCGGCCTGCAGCTCCCGCTATCC
TTAATGGAGGACATGGTCAATGCGGCACTCGTCGGCGACTTCGGCGTAGA
AGGCAAGAGTCGGGACCGTCATCCAGGGGTTAAAAAACATGAAGATCAAG
CGGTGCAGGCGGCCCGAAAATTCGAGGACGAGGTCAGCCCGCAGCTGCTG
GCGATCGCCGACGATGCGCTGCGGCAGTGGCTACCTCACGTGCTCTTGAC
GCGATTCCACGTGACTCCCCAATGAAGGACGCGAAGTAACTCGTCTCTTT
TTCCATTTATGCAGTACATCGTCCCCATCGCCTTGCAAGACCTCGATATA
CGTCTGTGTATGCGTTGACTATATTATACATAAACGCGCACCTGGCCCTG
TTCTGCTATTCATTATAAGTTACCCGTATTTGCCTCCCCCAAAGTGTGTG
TGTGGGTGTGTGTAAATTGCACATAATCCCTGCAGTTGCTCCTTCCGATG
CAGTATGAATGTTTATTTGCGTAAATGTTTGTGTTGCGCTAGGTTTCCAC
ATCTTACTTTTACATGCAGGCAATTTTGAGGAGTTCAAGTACACTCCTTA
CCGAAGATTTCACCGGCAGAGGGCCGTGGTGCAAAAGTCAAGAATTCGAT
CATCGAATGATAAGGTTTCCGTGGTCTCATAACCTGCCGCATTTCTGCCA
CAGAGGAAACTCATGAGTACATTCGACGTCCATGCAGCAAATGTCGCCCG
ACCTTGCAGTTTTTCACTAGAGCGGATTCCCGAGTTCGATTATTGACAGA
GAGATTTCTTTTATTGTGTTAGCGTGAGAACGCGAATGAGTAAAATGCGA
CCAATAATTGTGATTGGTTGACCAAGTGTAAGACAGCTGAACTTGCATGC
GATAAAAAATCGTTGGCGAGAACCCGGGGAGAGATGGAAAGATCTGTACG
GACCACCCAGACAGGACCGCAACGTTGCAGTAGGTAGGATAGGTAACGTA
GCACGTTGAGGCCCATACCCCGCGTTGTAGGTGAGACAGAAGATAAAATG
AATATATTTGCAAGGGTTGGCTTAAGACAGACCAGCTTGAGAAGAGGTCC
GGATGTCTTGAAGCATTCTCTAAAGGGAACTAACATGCGAATCGCCTGCA
AGGGATCAGCGAGGTGTAATAATGTTTTGTGGCAGGGCGTGTCAACCACC
TTTTGGATCCTGTGTGCTGCAAGGGGACCCGTATCTAGGACAGGAGATGC
ACAACGGGGTGATTCAGTGGACATGAAGTGTACGGGGTTTGAGTACGGCA
TATAGATGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1080:125878..129037-

>mRNA_A-nodosum_M_contig1080.1.1 ID=mRNA_A-nodosum_M_contig1080.1.1|Name=mRNA_A-nodosum_M_contig1080.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1191bp|location=Sequence derived from alignment at A-nodosum_M_contig1080:125878..129037- (Ascophyllum nodosum dioecious)
ATGGTTCGAAGGGGGCTGTCCCGGGGGAAACTCAATCTCATCGCTTTGGC
TTGCGTTTGGCTTGCTTTCTTCCACCAGGCTTTGGCGTATGCTCAATTGA
AAGACGCCGATAGTATCAGGGGAGAGGTGGGCTCTGCGGAGGAGGTGGTC
TGCCCCCCGTGTGATTTCCTCTTTTCTAAGCTCGAGCCTAGCGAGAATGG
GGGTAAGCTGGTCCAAAATGTGAAGATTCAAGAGCGAGGAGAGCCGAAGA
GCGGAACGGGCTTTATGTTTTCGTGGGCCGGAGGGACACTCGTGCGAACC
TGCCGTTACCTGCAGTCGGCGTTTGGCGAGAAGAGCTGTGTGGTTGAAGA
TGAACCGGTACGAGCTTCTCGATATGGTGGCCCAGCGATCAGCAATTACA
CGCTAATTTTTGAGCCATCGTTGGGCGGTGACGATGCCAGATGCAGCTGC
GACTCTATAGAAAGGGTAACTATCGCCATCTCACGGTTTCGGAAGCACAC
TCTGCCGGTGTCTCCCACGTGCCTGTACGCCCACCCCAACGGCGTTGATG
CAAGGACCCTCCTCTCCCCGGACGGCAAGCACGCCGGCGGTTACGCGTGC
TCGTTCGCCGATGGTTCGGCTGTGACGAACTACGATGATCTGTGGAGATG
CGTGCACGAAGCAGCTTGTCTTATCACAGACGACTGGCACCAAATGGCCA
TCTTCAGGGACCCAAGACCGGTTGCCGCGAGCGCATTTTACCACCTCCAT
CGAAATCGAAAGCTTTCCTTTTACTCCGGCACGGTGGATGACTTTGTCGC
CGCGGTGCTTCCAACGATGAGCCAATGGATCGCAATTCGGCACATGTTGT
TTGAAGGCATCCTACAGGCCAAATCAACGTCATTCTGGTACCAGGACGCG
CTGGAGGATCCCAAGGGGTGGCACTACCGATGGCTGCAAACGATCGGCCT
GCAGCTCCCGCTATCCTTAATGGAGGACATGGTCAATGCGGCACTCGTCG
GCGACTTCGGCGTAGAAGGCAAGAGTCGGGACCGTCATCCAGGGGTTAAA
AAACATGAAGATCAAGCGGTGCAGGCGGCCCGAAAATTCGAGGACGAGGT
CAGCCCGCAGCTGCTGGCGATCGCCGACGATGCGCTGCGGCAGTGGCTAC
CTCACGTGCTCTTGACGCGATTCCACGTGACTCCCCAATGA
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