mRNA_A-nodosum_M_contig108.44.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig108.44.1
Unique NamemRNA_A-nodosum_M_contig108.44.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.950e-51
Identity = 92/177 (51.98%), Postives = 122/177 (68.93%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCG-DCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
            AG D+F++++F+GN A  GGALRLAG A +  CSF +N ++  GG  VSNIG +S++S  SFS N + C+ G FL   E    +  IC GC  +CE CS ++PQ VP CS A++H+ S GG  VTL+ L I+PGYWRAT +S  +L CY A+AC GG+TGSE +C  GY GPYC+VC
Sbjct:  394 AGQDKFVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDGCPVECEGCSFEEPQLVPKCSDALEHSNSSGG-TVTLDALVIEPGYWRATPSSENVLECYNADACLGGVTGSESYCLEGYEGPYCAVC 569          
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 5.780e-49
Identity = 93/178 (52.25%), Postives = 114/178 (64.04%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEV-DDPFSFICSGCG-DCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
            AG D F  ++F+GN A  GGALRLAG A    CSF  N A+   G  VSNIG +SA+    FSGN FDC +  +L  ++  DDPF  +CSGC   CE C  D+   VPAC+  ++HA S GG N+TLE L I  GYWRAT +S  +L CY AEAC GG+T + G+C  GY GPYCSVC
Sbjct: 1037 AGKDAFNGSIFEGNSAGTGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDPFEVMCSGCEVTCEGCVFDEGLLVPACTEVMEHATSDGG-NITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGPYCSVC 1213          
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 7.880e-49
Identity = 88/179 (49.16%), Postives = 116/179 (64.80%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGD-CEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCRE 537
            AG+D F+DT F+ N A  GGALRLAG AS+  CSF +N ++ +GG  VSNIGT+ +    SFS N FDC +G+FL      D F  +C+GC   C  C+  DP  VP C+  ++H+ S  G + TLE L IQ GYWRAT +   +L CY A+AC GG+TG+ G+C  GY GPYC++C E
Sbjct: 1028 AGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTACVGCAFADPLLVPTCTDLLEHSTSSDGRD-TLETLSIQAGYWRATTSGTEVLACYHADACLGGVTGTSGYCLEGYEGPYCAICSE 1205          
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.040e-46
Identity = 89/177 (50.28%), Postives = 111/177 (62.71%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGDCEAC-SMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
            AG D F+DT F+ N A  GGALRLAG AS++ CSF +N +   GG  VSNIG +S+  + +FSGN FDC TG FL   E DD F  +C GC       +  +P  VP C   ++H+ S  G  +TLE L IQ GYWRAT  S  +L CY  EAC GG+TG+ G+C  GY GPYC+VC
Sbjct:  837 AGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCRDLLEHSTSPDG-KLTLEALSIQRGYWRATTTSEEVLACYHPEACLGGVTGTAGYCLEGYQGPYCAVC 1012          
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 6.730e-46
Identity = 89/180 (49.44%), Postives = 113/180 (62.78%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGD-CEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCREN 540
            +G D F DT+F+GN A  GGALRLAG ASLV CSF +N ++   G  VSN+G +S +S  +FSGN F+C   +FL      D     CSGC   C+ C    P  VP CS  + H+ S GG  VTLE L I PGYWRATN+S  +L CY  +AC GGITG+  +C  GY GPYC++C ++
Sbjct:  437 SGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFL-NYTSGDALDEACSGCQTTCDGCVQ--PPVVPLCSDVIPHSRSDGGL-VTLETLSIDPGYWRATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDD 612          
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.320e-45
Identity = 82/179 (45.81%), Postives = 112/179 (62.57%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGD-CEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCRE 537
            AG D   +++F+GN A  GGALRLAGEA +  CSF +N ++   G  VSNIG +S+++  SF GN FDC  G+F       D F  IC+GC   C+ C   +    P C+  +DH+ S GG NVTL+ L I  G+WRA+ +S  +L CY A+AC GG+TG+ G+C  GY GPYC +C +
Sbjct:  927 AGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDHFEAICNGCETTCDGCVFAEGSLAPICTEVMDHSTSDGG-NVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSD 1104          
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 2.860e-44
Identity = 83/177 (46.89%), Postives = 111/177 (62.71%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGD-CEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
            AG D F+  +F GN A  GGALR+AG AS+  CSF  N ++   G  +SNIG +S M+   FS N FDC +G+FL      DPF  +C+GC   C+ C  +     PACS  + H+ S GG N TL+ + I  GYWRAT+ S  +L C++A+AC GG+TG+ G+C  GY GPYCS+C
Sbjct:  644 AGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVCDGCVFEQGLVGPACSEVMAHSTSTGG-NTTLQEVSIDRGYWRATSVSEEVLECFQADACLGGVTGTSGYCLEGYEGPYCSIC 819          
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 8.060e-44
Identity = 88/192 (45.83%), Postives = 113/192 (58.85%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFL------------IEVEVDDPFSFICSGC-GDCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCREN 540
            +G D F DT+F+GN A  GGALRLAG ASL  CSF +N ++   G  VSN+G +S +S  SFSGN F+C   +FL            +     DP    CSGC   C+ C+   P  VP CS  +  + S GG  VTLE L I PGYW ATN+S  +L CY  +AC GGITG+  +C  GY GPYC++C ++
Sbjct:  431 SGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQATCDGCAQ--PPAVPLCSDVIPDSRSDGGL-VTLETLLIDPGYWMATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDD 619          
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.860e-43
Identity = 86/180 (47.78%), Postives = 107/180 (59.44%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDD-PFSFICSGCG-DCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCRE 537
            AG D  ++++FKGN A  GGALRLAG             +    G  VSNIG +S M+  SF+GN F C    FL     D+  F  +C GC   C+ CS D+P  VP CS  +DH  S GG  VTLE L I PGYWRAT++S  ILPCY A+AC GG+TG+ G+C   Y GPYCS+C +
Sbjct:  843 AGQDIVVNSVFKGNSAEVGGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEYDATDNGTFEAVCDGCRVACDGCSFDEPPAVPTCSDVMDHGTSTGG-KVTLETLSIDPGYWRATSSSKEILPCYNADACLGGVTGTAGYCLESYEGPYCSICSD 1021          
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.640e-41
Identity = 83/178 (46.63%), Postives = 104/178 (58.43%), Query Frame = 1
Query:    4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFL-IEVEVDDPFSFICSGCG-DCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
            AG D  ++++FKGN A  GGALR                +    G  VSNIG +S M+  SF+GN F C    FL  +   D  F  +C GC   C+ CS D+   VP CS  +DH+ S GG NVTLE L I PGYWRAT++S  ILPCY A+AC GG+TG+ G+C   Y GPYCS+C
Sbjct:  903 AGQDIVVNSVFKGNSAEVGGALRXXXXXXXXXXXXXXXVSGHQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEFDTSGDGTFEAVCDGCRVACDGCSFDEQPAVPTCSDVMDHSTSPGG-NVTLETLLIDPGYWRATSSSKKILPCYNADACLGGVTGTAGYCLESYEGPYCSIC 1079          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G2Z8_ECTSI1.950e-5151.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTI5_ECTSI5.780e-4952.25Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D8LSC0_ECTSI7.880e-4949.16Polymorphic Outer membrane protein G/I family n=3 ... [more]
D8LIY0_ECTSI2.040e-4650.28Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FHH1_ECTSI6.730e-4649.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0E9_9PHAE1.320e-4545.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTL7_ECTSI2.860e-4446.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KR67_9PHAE8.060e-4445.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI1.860e-4347.78Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE2.640e-4146.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:582800..584146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2Z8
PFAMsBeta_helix,Chlam_PMP
Model size542
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.2e-52
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866466.3009472-CDS-A-nodosum_M_contig108:582799..5830391680866466.3009472-CDS-A-nodosum_M_contig108:582799..583039Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 582800..583039 +
1680866466.31086-CDS-A-nodosum_M_contig108:583319..5835961680866466.31086-CDS-A-nodosum_M_contig108:583319..583596Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 583320..583596 +
1680866466.3216872-CDS-A-nodosum_M_contig108:584121..5841441680866466.3216872-CDS-A-nodosum_M_contig108:584121..584144Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 584122..584144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.44.1prot_A-nodosum_M_contig108.44.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig108 582800..584144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig108.44.1

>prot_A-nodosum_M_contig108.44.1 ID=prot_A-nodosum_M_contig108.44.1|Name=mRNA_A-nodosum_M_contig108.44.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=180bp
TAGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVS
NIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGDCEACSM
DDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYK
AEACNGGITGSEGFCHTGYSGPYCSVCREN
back to top

mRNA from alignment at A-nodosum_M_contig108:582800..584146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig108.44.1 ID=mRNA_A-nodosum_M_contig108.44.1|Name=mRNA_A-nodosum_M_contig108.44.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1347bp|location=Sequence derived from alignment at A-nodosum_M_contig108:582800..584146+ (Ascophyllum nodosum dioecious)
ACAGCCGGCAACGACCGCTTCATCGACACGCTTTTCAAGGGTAATATAGC CTCGGAGGGCGGTGCTCTGAGGCTCGCCGGCGAGGCCTCCCTGGTTCGGT GCTCGTTCGAGAAGAACGCGGCTGAGGTGGATGGTGGACCGACTGTATCC AACATCGGGACTCTATCCGCAATGTCCGAGTGCTCCTTCAGCGGCAACAC CTTCGATTGCGAGACGGGGTCTTTCCTTATCGAGGTTGAGGTAAGGCAGT GGCTGAAAGATAGCGAGGCCCGTAAGATGGCGAGTAAGCTCAGAGGCAAA CGAAATGCGTTTGTGTTGAGGTAGGCGCCAGGCGAGGTCGTCCGTGCGCC GCGTCCGTGGACGTTGATTGACGGGAGGATAGATCCCGTGCGAGGGATGG CATGGAAGTAGCTTGCTTTCAAGGCCTTCGCGCGACTGTTTTTCGTCCTA CATGGTGTCTCATTTCCCCCCTCTGCCCTGCCCCCCCCTCCCCGCTTTCC CTGGTCGCACCGCACCACAGGTTGACGACCCTTTCAGCTTTATTTGCTCC GGGTGCGGTGACTGCGAAGCATGCTCGATGGACGATCCACAGACGGTTCC AGCATGCTCATCGGCCGTGGACCATGCACTCAGCCAAGGGGGGCACAATG TCACCCTAGAGTGGCTGCAGATTCAACCGGGGTACTGGCGGGCGACCAAC AATAGCTTGGCAATCTTGCCGTGTTACAAGGCCGAGGCTTGCAATGGTGG GATAACGGGCTCAGAGGGGTTCTGCCATACTGGCTACTCGGGACCATGTG AGTTTGGCGCTGTACACTGTGTACTACAAGTAAGTAGTATCGATACTTTT ATAATTTTGTCGCCTGCTTTTCGCAGCTCACACGTTGCTCCAAGCAGGGA GACGCAGGATGTTTTTGACGAAACCCCATATTTGGTACATACCACGAATC TGTTTCGTATTTTTACGAAAAGCATATCTTGCCAGCGCATGGCAAACAGC TCAAGTTCTTGTTCCCTCTTATGATAGACGATACACGATACAGGGAAGAT GGCGGACGAACTTCGTAGTAGGTCGTTTTCGCTCTTGGTAACGTTCGATA CCAGGATAAACCTTGCCGAAGCCAGAACGTGAGTCTTGCCGAACCTTGGA ACAGCGGCTCTACGCTGGAGCTTTTCAGCCCGACATCATTGAACTCGTCA TCCCCGCAACCTCTTTTGCTCTCATATTATATGTTTTGGTCTTCGTCCTG TCTGAAAAAACGAAAACCTCGCGACATGCTCTCCATCTCTCTTTTTTTTT TTACGTTGCCACCCCATGTTAGATTGTTCCGTTTGCAGGGAAAATTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig108:582800..584146+

>mRNA_A-nodosum_M_contig108.44.1 ID=mRNA_A-nodosum_M_contig108.44.1|Name=mRNA_A-nodosum_M_contig108.44.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at A-nodosum_M_contig108:582800..584146+ (Ascophyllum nodosum dioecious)
ACAGCCGGCAACGACCGCTTCATCGACACGCTTTTCAAGGGTAATATAGC
CTCGGAGGGCGGTGCTCTGAGGCTCGCCGGCGAGGCCTCCCTGGTTCGGT
GCTCGTTCGAGAAGAACGCGGCTGAGGTGGATGGTGGACCGACTGTATCC
AACATCGGGACTCTATCCGCAATGTCCGAGTGCTCCTTCAGCGGCAACAC
CTTCGATTGCGAGACGGGGTCTTTCCTTATCGAGGTTGAGGTTGACGACC
CTTTCAGCTTTATTTGCTCCGGGTGCGGTGACTGCGAAGCATGCTCGATG
GACGATCCACAGACGGTTCCAGCATGCTCATCGGCCGTGGACCATGCACT
CAGCCAAGGGGGGCACAATGTCACCCTAGAGTGGCTGCAGATTCAACCGG
GGTACTGGCGGGCGACCAACAATAGCTTGGCAATCTTGCCGTGTTACAAG
GCCGAGGCTTGCAATGGTGGGATAACGGGCTCAGAGGGGTTCTGCCATAC
TGGCTACTCGGGACCATATTGTTCCGTTTGCAGGGAAAAT
back to top