mRNA_A-nodosum_M_contig108.44.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.950e-51 Identity = 92/177 (51.98%), Postives = 122/177 (68.93%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCG-DCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
AG D+F++++F+GN A GGALRLAG A + CSF +N ++ GG VSNIG +S++S SFS N + C+ G FL E + IC GC +CE CS ++PQ VP CS A++H+ S GG VTL+ L I+PGYWRAT +S +L CY A+AC GG+TGSE +C GY GPYC+VC
Sbjct: 394 AGQDKFVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDGCPVECEGCSFEEPQLVPKCSDALEHSNSSGG-TVTLDALVIEPGYWRATPSSENVLECYNADACLGGVTGSESYCLEGYEGPYCAVC 569
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 179 bits (455), Expect = 5.780e-49 Identity = 93/178 (52.25%), Postives = 114/178 (64.04%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEV-DDPFSFICSGCG-DCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
AG D F ++F+GN A GGALRLAG A CSF N A+ G VSNIG +SA+ FSGN FDC + +L ++ DDPF +CSGC CE C D+ VPAC+ ++HA S GG N+TLE L I GYWRAT +S +L CY AEAC GG+T + G+C GY GPYCSVC
Sbjct: 1037 AGKDAFNGSIFEGNSAGTGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDPFEVMCSGCEVTCEGCVFDEGLLVPACTEVMEHATSDGG-NITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGPYCSVC 1213
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 179 bits (454), Expect = 7.880e-49 Identity = 88/179 (49.16%), Postives = 116/179 (64.80%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGD-CEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCRE 537
AG+D F+DT F+ N A GGALRLAG AS+ CSF +N ++ +GG VSNIGT+ + SFS N FDC +G+FL D F +C+GC C C+ DP VP C+ ++H+ S G + TLE L IQ GYWRAT + +L CY A+AC GG+TG+ G+C GY GPYC++C E
Sbjct: 1028 AGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTACVGCAFADPLLVPTCTDLLEHSTSSDGRD-TLETLSIQAGYWRATTSGTEVLACYHADACLGGVTGTSGYCLEGYEGPYCAICSE 1205
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 172 bits (436), Expect = 2.040e-46 Identity = 89/177 (50.28%), Postives = 111/177 (62.71%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGDCEAC-SMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
AG D F+DT F+ N A GGALRLAG AS++ CSF +N + GG VSNIG +S+ + +FSGN FDC TG FL E DD F +C GC + +P VP C ++H+ S G +TLE L IQ GYWRAT S +L CY EAC GG+TG+ G+C GY GPYC+VC
Sbjct: 837 AGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCRDLLEHSTSPDG-KLTLEALSIQRGYWRATTTSEEVLACYHPEACLGGVTGTAGYCLEGYQGPYCAVC 1012
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 171 bits (432), Expect = 6.730e-46 Identity = 89/180 (49.44%), Postives = 113/180 (62.78%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGD-CEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCREN 540
+G D F DT+F+GN A GGALRLAG ASLV CSF +N ++ G VSN+G +S +S +FSGN F+C +FL D CSGC C+ C P VP CS + H+ S GG VTLE L I PGYWRATN+S +L CY +AC GGITG+ +C GY GPYC++C ++
Sbjct: 437 SGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFL-NYTSGDALDEACSGCQTTCDGCVQ--PPVVPLCSDVIPHSRSDGGL-VTLETLSIDPGYWRATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDD 612
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 170 bits (430), Expect = 1.320e-45 Identity = 82/179 (45.81%), Postives = 112/179 (62.57%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGD-CEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCRE 537
AG D +++F+GN A GGALRLAGEA + CSF +N ++ G VSNIG +S+++ SF GN FDC G+F D F IC+GC C+ C + P C+ +DH+ S GG NVTL+ L I G+WRA+ +S +L CY A+AC GG+TG+ G+C GY GPYC +C +
Sbjct: 927 AGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDHFEAICNGCETTCDGCVFAEGSLAPICTEVMDHSTSDGG-NVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSD 1104
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 166 bits (420), Expect = 2.860e-44 Identity = 83/177 (46.89%), Postives = 111/177 (62.71%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDDPFSFICSGCGD-CEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
AG D F+ +F GN A GGALR+AG AS+ CSF N ++ G +SNIG +S M+ FS N FDC +G+FL DPF +C+GC C+ C + PACS + H+ S GG N TL+ + I GYWRAT+ S +L C++A+AC GG+TG+ G+C GY GPYCS+C
Sbjct: 644 AGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVCDGCVFEQGLVGPACSEVMAHSTSTGG-NTTLQEVSIDRGYWRATSVSEEVLECFQADACLGGVTGTSGYCLEGYEGPYCSIC 819
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 164 bits (416), Expect = 8.060e-44 Identity = 88/192 (45.83%), Postives = 113/192 (58.85%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFL------------IEVEVDDPFSFICSGC-GDCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCREN 540
+G D F DT+F+GN A GGALRLAG ASL CSF +N ++ G VSN+G +S +S SFSGN F+C +FL + DP CSGC C+ C+ P VP CS + + S GG VTLE L I PGYW ATN+S +L CY +AC GGITG+ +C GY GPYC++C ++
Sbjct: 431 SGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQATCDGCAQ--PPAVPLCSDVIPDSRSDGGL-VTLETLLIDPGYWMATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDD 619
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.860e-43 Identity = 86/180 (47.78%), Postives = 107/180 (59.44%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFLIEVEVDD-PFSFICSGCG-DCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVCRE 537
AG D ++++FKGN A GGALRLAG + G VSNIG +S M+ SF+GN F C FL D+ F +C GC C+ CS D+P VP CS +DH S GG VTLE L I PGYWRAT++S ILPCY A+AC GG+TG+ G+C Y GPYCS+C +
Sbjct: 843 AGQDIVVNSVFKGNSAEVGGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEYDATDNGTFEAVCDGCRVACDGCSFDEPPAVPTCSDVMDHGTSTGG-KVTLETLSIDPGYWRATSSSKEILPCYNADACLGGVTGTAGYCLESYEGPYCSICSD 1021
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 157 bits (398), Expect = 2.640e-41 Identity = 83/178 (46.63%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 4 AGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSNIGTLSAMSECSFSGNTFDCETGSFL-IEVEVDDPFSFICSGCG-DCEACSMDDPQTVPACSSAVDHALSQGGHNVTLEWLQIQPGYWRATNNSLAILPCYKAEACNGGITGSEGFCHTGYSGPYCSVC 531
AG D ++++FKGN A GGALR + G VSNIG +S M+ SF+GN F C FL + D F +C GC C+ CS D+ VP CS +DH+ S GG NVTLE L I PGYWRAT++S ILPCY A+AC GG+TG+ G+C Y GPYCS+C
Sbjct: 903 AGQDIVVNSVFKGNSAEVGGALRXXXXXXXXXXXXXXXVSGHQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEFDTSGDGTFEAVCDGCRVACDGCSFDEQPAVPTCSDVMDHSTSPGG-NVTLETLLIDPGYWRATSSSKKILPCYNADACLGGVTGTAGYCLESYEGPYCSIC 1079 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig108.44.1 >prot_A-nodosum_M_contig108.44.1 ID=prot_A-nodosum_M_contig108.44.1|Name=mRNA_A-nodosum_M_contig108.44.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=180bp TAGNDRFIDTLFKGNIASEGGALRLAGEASLVRCSFEKNAAEVDGGPTVSback to top mRNA from alignment at A-nodosum_M_contig108:582800..584146+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig108.44.1 ID=mRNA_A-nodosum_M_contig108.44.1|Name=mRNA_A-nodosum_M_contig108.44.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1347bp|location=Sequence derived from alignment at A-nodosum_M_contig108:582800..584146+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig108:582800..584146+ >mRNA_A-nodosum_M_contig108.44.1 ID=mRNA_A-nodosum_M_contig108.44.1|Name=mRNA_A-nodosum_M_contig108.44.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at A-nodosum_M_contig108:582800..584146+ (Ascophyllum nodosum dioecious)back to top |