mRNA_A-nodosum_M_contig108.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig108.1.1
Unique NamemRNA_A-nodosum_M_contig108.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 554 bits (1428), Expect = 1.480e-183
Identity = 283/485 (58.35%), Postives = 355/485 (73.20%), Query Frame = 1
Query:    1 SGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEE--PTPMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVP-VRMKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTP 1446
            S +LLT    ISAAWR HY RLAAD TGNS+  D+W  W   PQR+H+  LD  I   EM+EAL RI+R+K+PG DG+PAD L+LA  EE   +PMG  +L +LN +WK+  IP+  R STVV IPKKGD+TDM N+RGISLM T LKVLV+++S RLN AFE+  +FS++QAGFR +EECVTQ+ACLLEI +RRK      Y++FVDLKKAYDTVPQEAL AKL FYGVRG  L FIRALY+ S+I VR G  +S+   L RGVRQGCPLSPVLFNIFIND++DGAE  GVP V  +     RIP LLFADDLV +S +R  +  M   ++ W AENEMS GI KCG+M +      L + P RW++AG+ +PIV  YTYLGL F   LDV  M+ +++A G++LV  +TP+L  R IPVP+KVAVVRGV++PRLLFGAEV+GM  +IT  +QV +N+ +RMV GM+  +TVS+VA+WRE+  P
Sbjct:  446 SRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQRRHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLFNIFINDILDGAESLGVPEVGNQLERAPRIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAIGHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIP 930          
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 349 bits (895), Expect = 3.890e-106
Identity = 195/497 (39.24%), Postives = 288/497 (57.95%), Query Frame = 1
Query:    1 SGSLLTEVTAISAAWRDHYGRLAADPTGNSQSP----DRWTRW-GQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEEPTPMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVG---GTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPV-----RMKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSM--LHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAI-TEPMQVLLNQVWRMVGGMNRNST-VSTVAIWREMG 1440
            SG L TE   I+A W  HY  L  DP   +       + W R  G  P    L+ ++  I   E+ +AL R+  NKA G DGI A+ LKLA+    +P G +LL ++N +W +  +P  W +S VVSI KKGD+T M NYRGIS+M   +K+L+ V++ RL    +   +  + Q GF   EEC  Q A + +I  RR+ +GLPTY  F+DL+KAYDT+P E L +KL+  G+ G  L F++ALY  S +QV+ G   G +S+P  + RG+RQGCP SP+LFNIFIND+ DG E  G  V      +      R+P  LFADD V L+ S   +  M    ++W  ++ M  G++KCG+M + +   +  L +   RWQ+ G+ VP+VSEY YLG    +DL + +++ DRV K +R V+ L   L  R IP+ ++ +V++  ++P L +G EV+GM+       +Q +LNQ  R + G+   +  V+T  + RE+G
Sbjct:  338 SGVLHTEPGEINACWARHYRELLRDPHPAACRATIYHEAWERRRGGRPPSPALDGINGPIGGGELCKALKRLNNNKASGVDGITAETLKLAIYAPDSPFGKSLLELMNNIWTTKCVPKQWCSSAVVSILKKGDVTVMDNYRGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILFNIFINDIFDGIEGLGCEVPGCVDMLDSRQPLRVPGQLFADDTVGLAPSLDNLHAMFAHFSQWAEDHYMGFGVKKCGVMALGRHSDVVALREQADRWQLGGERVPVVSEYRYLGALINSDLSMRNIVGDRVNKSRRAVEALDSVLGGRDIPINVRTSVLKTCILPVLTYGCEVWGMDSTSGVNRLQTILNQCLRRLVGVGAKAPGVATAPLLRELG 834          
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 325 bits (833), Expect = 5.670e-95
Identity = 184/472 (38.98%), Postives = 274/472 (58.05%), Query Frame = 1
Query:   10 LLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAV-AEEPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTV 1419
            L+T     S AW  H+  LA D TGNS+S ++W+  G   +  + E  D  + +TE+  AL     NK+PG DGIP+++ KL    EEPT P       ++N++W+   IP     S +V IPKKGD+ D  NYRGISL+ T  KVL  +++ RL+    K  I  K QAGFR +EECV Q+  L E+ +RRK+ GL T++ F+D  KAYD VP +AL+ K+   G+ G+    I ALY   ++ VRVG  +S+  +   GVRQGCP SP+LF+IFIND++DG +   VP     G+ T IP LLFADD V L+ S   ++    ++T W+ + EM +  +KCGIM +N    ML      + I G+ +  V+EY YLG+ F    +  S L +    G++   ++  FL  R IP  M++A+VR V++P L +G E++GM+      +Q + +   R+V G+ R++ +  +
Sbjct: 1029 LVTGHEEKSEAWAAHFEELAKDSTGNSRSAEKWSNMGLGSEAVYTE-CDAILTWTEICAALKSTPNNKSPGSDGIPSEVWKLVQNEEEPTSPFAKLFSKLVNKIWEDEKIPQKLDPSVIVPIPKKGDMRDPNNYRGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKSSGIGGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLDGIKGVKVP-----GIDTEIPGLLFADDAVVLAESPAELQIALEKLTVWSLKWEMQINQEKCGIMGINSSTGML------FTIMGKPIKQVAEYKYLGVVFNDKWNNLSALKNNRDNGRKAFHSMYYFLSRRDIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQKIADDAARLVAGVGRSTALQRI 1488          
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG)

HSP 1 Score: 315 bits (808), Expect = 1.570e-93
Identity = 178/470 (37.87%), Postives = 269/470 (57.23%), Query Frame = 1
Query:   10 LLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVS 1413
            L+T+  A +  W  H+  LA D TGNS+S  +W   G+    +  E  D  + + E+  AL     NK+PG DGIP+++ K+   E EPT P+   +L ++  +W +  IP     S V+ IPKKGD+ D  NYRGISL+ T  KVL  +++ RL     K  I +K QAGFR +EECV Q+  L E+ +RRK+ GL T++ F+D  KAYD VP EAL+ K+   G+ G+    I ALY   ++ VRVG  +S+  D   GVRQGCP SP+LF+I+IND++DG +   +P     G++  IP LLFADD V L+ S   ++    ++T W+ + EM +   KCGIM +N    ML      + I G+ +  V EY YLG+ F    +  S L +     ++   ++  FL  + +P  M+ A++R V+IP L +G E++GM+      +Q + +   R+V G+ R++ +S
Sbjct:  343 LITDSEAKAEVWASHFEELAKDSTGNSRSAKKWRDIGKNYTAEFTE-CDTPLSWAEICAALKSTPNNKSPGSDGIPSEVWKMVQYEDEPTSPLAKLILRLITGIWDAEKIPKQLDPSVVIPIPKKGDIRDPNNYRGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLRKIKTAGIGGKLYRVIEALYRSPKMCVRVGDRLSKTVDYNCGVRQGCPASPMLFDIYINDLLDGIKGVKIP-----GIEECIPGLLFADDAVVLAESPAELQIALEKLTAWSQKWEMQINQDKCGIMGINSSTGML------FTIMGKPITQVKEYKYLGVVFNNKWNNLSALQNNKENERKAFQSMYYFLSRKDVPTAMRAALIRTVLIPILCYGCEIFGMSAVRCSTLQKVADDATRLVAGVGRSTALS 800          
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG)

HSP 1 Score: 314 bits (804), Expect = 6.440e-93
Identity = 180/472 (38.14%), Postives = 270/472 (57.20%), Query Frame = 1
Query:    1 SGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTV 1410
            S  L+T+    +  W  H+  LA D TGNS+S ++W   G        E  D  + +TE+  AL     NK+PG DGIP++  KL   E EPT P    LL ++N +W +  IP     S VV IPKKGD+ +  NYRGISL+ T  KV+  ++S RL     K  I +K QAGFR +EECV Q+  L E+ +RRK+ GL T++ F+D  KAYD VP +AL+ K+   G+RG+    I ALY   ++ VRVG  +S+  +   GVRQGCP SP+LF+IFIND++ G +   +P     G+ T I  LLFADD V L+ S   ++    +++ W+ + EM +  +KCGIM +N    ML      + + G+ +  V+EY YLG+ F    +  S L      G++   ++  FL  + IP  M+VA++R V+IP L +G E++GM+   +  +Q + +   R+V G+ +++ +
Sbjct:  402 SRQLVTDSETKAEVWAAHFEELARDSTGNSRSAEKWRDIGSDSTEVFTE-CDTPLSWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKNSGIRGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLGGIKGVKIP-----GIDTEIAGLLFADDAVVLADSPAELQIALEKLSAWSHKWEMKINQEKCGIMGINSSTGML------FTVMGKHIEQVTEYKYLGVVFNNKWNNLSALKSNRKNGRKAFHSMYYFLSRKDIPTAMRVALIRTVLIPILCYGGEIFGMSATRSGTLQKVADDATRLVAGVGKSTAL 861          
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A1R1YD24_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YD24_9FUNG)

HSP 1 Score: 307 bits (787), Expect = 8.910e-93
Identity = 173/469 (36.89%), Postives = 264/469 (56.29%), Query Frame = 1
Query:   10 LLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTV 1410
            L+T+  A +  W  H+  LA D TGNS+S D+W   G  P        D  + + E+ +AL     NK+PG DGIP+++ KL   E EPT P       ++N +W S  +P     S VV IPKKGD+ D  NYRGISL+ T  KV+  +++ RL     K  I +K QAGFR +EECV Q+  L E+ +RRK+ GL T++ F+D  KAYD VP +AL+ K+   G+  +    I ALY   ++ VRVG  +S+  +   GVRQGCP SP+LF+I+IND++ G +   +P     G +  I  LLFADD V L+ S   ++    +++ W+ + EM +  +KCGIM +N    ML      + + G+ +  V+ Y YLG+ F    +  S L +    G++   ++  FL  + IP  M+ A++R V+IP L +G E++GM+      +Q + +   R+V G+ R++ +
Sbjct:  256 LITDTNAKAEVWATHFEELAKDSTGNSRSADKWENIGTIPAV--FPECDAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKLVQNEKEPTSPFAKVTSRIINGIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGIGSKLYRIIEALYRSPKMCVRVGDKLSKLVEYNCGVRQGCPASPLLFDIYINDLLHGLKGVEIP-----GTEATISGLLFADDAVVLAESPSELQIALEKISAWSQKWEMQINQEKCGIMGINSCTGML------FTVMGKPIEQVTNYKYLGVVFNDKWNHLSALQNNRENGRKAFHSMYYFLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQKVADDAVRLVAGVGRSTAL 711          
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 316 bits (810), Expect = 3.070e-92
Identity = 189/488 (38.73%), Postives = 268/488 (54.92%), Query Frame = 1
Query:    1 SGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQC-PQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEE---------------PTPMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPK-KGDLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKE--GIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSE---PADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMKGGV--KTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPA-RWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLL-NQVWRMVG 1386
            S  +LT+   I+ AW  ++G LA D TG+      W R G   P    LE L+  + + E+  AL  ++  KAPG DG+ AD LKL   +                P PM   L  +L  MW   T+PS W  + VV I K +GD  +M NYRGISL+   LK+L  +++ RL    + +      K QAGFR +EEC+     L E+ +RR++M LP+Y+ F+DLKKAYDTVP  AL  KL+  GVRG+ L FI+ LY  S +  R          PA L RG+RQGCP+SP+LFN+FIND++D     GV V    G+   T +  LLFADDLV LS     +++    +T W  + EM  G+ KC IM ++ P+S L      +W + GQ VP+V EY YLG      LD+   +  RV + K+ + +++PFL  R IP+ ++  V   +V P  L+GAE++G+ +  T P+  L  N + R+ G
Sbjct:  623 SKEVLTDPLEIAQAWNLYFGELAEDRTGHQSDTAHWERVGSSIPSLPPLEGLNRPLQWKEVRAALLSMKNGKAPGCDGVSADFLKLCCGQSLEEEDDDGDDAETHPPNPMAAVLFKLLCAMWAQETVPSVWNMAEVVPIFKNRGDQLEMENYRGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKEQAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQNLYRHSSVSFRAPSDCCRNISPAPLRRGLRQGCPMSPLLFNVFINDIIDEIRELGVHVP---GLPRSTTLGGLLFADDLVLLSDHPDKLQQSLDAITHWADKWEMQFGVSKCAIMGIDMPISHLSSLREDQWTLQGQPVPLVEEYVYLGTLLHNSLDMKESIRYRVGRAKKALQSVSPFLSCRSIPLHIRSRVFMSMVCPVALYGAELWGLREDRTRPIHSLFANAIQRIAG 1107          
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG)

HSP 1 Score: 314 bits (804), Expect = 7.960e-92
Identity = 176/469 (37.53%), Postives = 269/469 (57.36%), Query Frame = 1
Query:   10 LLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTV 1410
            L+T+  A +  W  H+ +LA D TGNS+S D+W   G           D  + + E+ +AL     NK+PG DGIP+++ KL   E EPT P+   +  ++N++W S  +P     S VV IPKKGD+ D  NYRGISL+ T  KV+  +++ RL     K  I +K QAGFR +EECV Q+  L E+ +RRK+ GL T++ F+D  KAYD VP +AL+ K+   G+  +    I ALY   ++ VRVGG +S+  +   GVRQGCP SP+LF+I+IND++ G +   +P     G +  I  LLFADD V L+ S   ++    +++ W+ + EM +  +KCGIM +N    ML      + I G+ V  VS Y YLG+ F    +  S L +    G++ + ++  FL  + IP  M+ A++R V+IP L +G E++GM+      +Q + +   R+V G+ R++ +
Sbjct:  582 LITDTDAKAEVWATHFEKLAKDSTGNSRSADKWKNMGTI--AAVFPECDAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKLVQNEIEPTSPLAKVISKIINRIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGIGSKLYRIIEALYRSPKMCVRVGGKLSKLVEYNCGVRQGCPASPLLFDIYINDLLHGLKGVEIP-----GTEAMISGLLFADDAVVLAESPAELQIALEKISAWSQKWEMQINQEKCGIMGINSSTRML------FTIMGKPVEQVSNYKYLGVVFNDKWNHLSALQNNRENGRKALHSMYFFLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQKVADDAARLVAGVGRSTAL 1037          
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR)

HSP 1 Score: 307 bits (786), Expect = 4.320e-91
Identity = 178/493 (36.11%), Postives = 276/493 (55.98%), Query Frame = 1
Query:    1 SGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQR-KHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLK-LAVAEEP-TPMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKG-DLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVV----------------NKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTV 1419
            +G+++ +       W  H+G LA+D TG+S+  + W    + P++ +     DE + Y ++  AL      KAPG DGIPAD+LK +++ EEP +    AL   +  +W  + IP       VV IPKK   + +MG+ RGI+L+ +  KV+  + +NR++   E  G+ +K QAGFR  EEC  Q A L E+ KRR +    TY+ F+D  KAYD VPQ AL+ KL+  G+ G  L  +++LY   R+ VRVG + S   +   GVRQGCP SP+LF++FIND++ G +   +P     GV   +  LLFADD V ++ S   + R    +T W+ ++EMSV   KCGIM +                NK   +  Q P  ++I G +VP VSEY YLG+RFT DL + SM+    +KG++ +  +   L  + +PV +K+  ++  +   L +GAEV+GM+    + +Q ++N+  R+V G  RN+ +  +
Sbjct:  194 TGNVIHDKKGKEELWARHFGDLASDKTGHSRDLEYWN--SKFPKKCEAFPECDESLSYEDLRIALKTTPWGKAPGLDGIPADILKVISMEEEPESKAAQALWITVRAIWNEAVIPREINVGEVVPIPKKVMSVVNMGDTRGIALLPSLTKVVAKIAANRISQIAETHGLLAKEQAGFRTLEECTAQVATLYEVVKRRSIRNQSTYLAFIDYAKAYDKVPQGALLRKLESIGIGGHLLQVVKSLYEDPRMCVRVGSSTSPVVNYHCGVRQGCPASPILFDLFINDLLQGMDGVAIP-----GVSEAVSGLLFADDAVVMAESESALRRNLDLLTSWSEKHEMSVNASKCGIMKIRATEDVIAGGPNFLQPNKKARVEQQEPEPFEIMGNVVPEVSEYIYLGIRFTPDLCLNSMMQHVESKGRKAIGAMYYLLSKKDMPVYVKILSIKVKLQSILTYGAEVWGMSTLRCKGIQRIMNEACRLVVGGGRNAAMDRI 679          
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Match: A0A1R1YJD8_9FUNG (LINE-1 retrotransposable element ORF2 protein n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YJD8_9FUNG)

HSP 1 Score: 310 bits (795), Expect = 7.100e-91
Identity = 175/469 (37.31%), Postives = 271/469 (57.78%), Query Frame = 1
Query:   10 LLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTV 1410
            L+T+    +  W  H+  LA D TGNS+S ++W   G        E  D  + + E+ +AL      K+PG DGIP++  K    E EPT P+   L  ++ ++W + +IP     S VV IPKKGD+ +  NYRGISL+ T  KV+  +++ RL     K  I +K QAGFR +EECV Q+  L E+ +RRK+ GL T++ F+D  KAYD VP EAL+ K+   G+ G+    I ALY   ++ VR+GG +S+  +   GVRQGCP SP+LF+I+IND++DG +   VP     GV+  IP LLFADD V L+ S   ++    +++ W+ + EM +  +KCG+M +N    ML      + + G+ +  V+EY YLG+ F    +  S L +    G++   ++  FL  + IP  M+V+++R V+IP L +G E++GM+   +  +Q + N   R+V G+ R++ +
Sbjct:  717 LITDSETKAEVWAAHFEELAKDSTGNSRSAEKWHGMGNDSAGVFTE-CDTPLFWAEICDALKSTPNKKSPGYDGIPSEAWKTVQHEIEPTSPLAKVLFRLIKEIWDNESIPEQLDPSVVVPIPKKGDMREPNNYRGISLIPTLSKVVSKIIARRLCKIENKYDILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLKKIRACGIGGKVYRIIEALYRSPKMCVRIGGQLSKLVEYNCGVRQGCPASPILFDIYINDLLDGIKGVKVP-----GVEEVIPGLLFADDAVVLAESPAELQIALEKLSAWSNKWEMQINQEKCGVMGINGNTGML------FTVMGKPINQVTEYKYLGVLFNDKWNNLSALKNNRENGRKAFHSMYYFLTKKDIPTAMRVSLIRTVLIPILCYGGEIFGMSTTRSGTLQKVANDAARLVAGVGRSTAL 1173          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE1.480e-18358.35Reverse transcriptase domain-containing protein n=... [more]
A0A7S1SJ55_9CHLO3.890e-10639.24Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A1R1YP44_9FUNG5.670e-9538.98LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A1R1Y7R2_9FUNG1.570e-9337.87Putative RNA-directed DNA polymerase from transpos... [more]
A0A1R1YAQ4_9FUNG6.440e-9338.14RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1YD24_9FUNG8.910e-9336.89RNA-directed DNA polymerase from mobile element jo... [more]
A0A3M2C3P5_9GAMM3.070e-9238.73Reverse transcriptase domain-containing protein n=... [more]
A0A1R1X7T5_9FUNG7.960e-9237.53RNA-directed DNA polymerase from mobile element jo... [more]
A0A0F9ZBM3_9MICR4.320e-9136.11Endonuclease-reverse transcriptase n=2 Tax=Nosema ... [more]
A0A1R1YJD8_9FUNG7.100e-9137.31LINE-1 retrotransposable element ORF2 protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:4971..6443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog45157.CMT010CT
PFAMsDUF4283,Exo_endo_phos_2,RVT_1
Model size1473
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.81e-71
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size1473
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866464.3557355-CDS-A-nodosum_M_contig108:4970..64431680866464.3557355-CDS-A-nodosum_M_contig108:4970..6443Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 4971..6443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.1.1prot_A-nodosum_M_contig108.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig108 4971..6443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig108.1.1

>prot_A-nodosum_M_contig108.1.1 ID=prot_A-nodosum_M_contig108.1.1|Name=mRNA_A-nodosum_M_contig108.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=491bp
SGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEY
LDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEEPTPMGNALLA
VLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVV
VLSNRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPT
YMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVG
GTVSEPADLLRGVRQGCPLSPVLFNIFINDVMDGAERSGVPVRMKGGVKT
RIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVN
KPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKG
KRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPM
QVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPLYVRWRRRE
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mRNA from alignment at A-nodosum_M_contig108:4971..6443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig108.1.1 ID=mRNA_A-nodosum_M_contig108.1.1|Name=mRNA_A-nodosum_M_contig108.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1473bp|location=Sequence derived from alignment at A-nodosum_M_contig108:4971..6443- (Ascophyllum nodosum dioecious)
TCCGGATCCCTTCTAACAGAAGTAACTGCCATCTCGGCAGCGTGGCGCGA TCACTATGGGCGACTTGCGGCTGACCCTACGGGGAACAGCCAATCACCGG ACCGGTGGACGCGGTGGGGACAATGCCCTCAGAGAAAGCACCTCGAGTAC TTAGACGAGGACATCCCGTACACGGAGATGTTGGAGGCCCTAAATCGGAT TCGAAGAAACAAGGCACCAGGACAAGATGGGATTCCCGCTGACTTACTTA AGTTGGCGGTGGCTGAGGAACCGACCCCTATGGGGAACGCGCTCTTAGCC GTGCTGAACCAGATGTGGAAGTCGAGCACCATACCTTCGGCTTGGCGCAA CTCAACAGTAGTTTCGATACCCAAAAAGGGGGACCTTACGGATATGGGAA ACTACCGAGGAATATCCCTGATGGCCACAGCACTTAAGGTGCTAGTGGTC GTCCTCAGCAACCGGCTTAACGGGGCGTTTGAGAAAGAGGGAATATTCAG CAAAGCCCAAGCAGGCTTCCGGAGGAAGGAAGAATGTGTCACCCAAAGTG CCTGCCTTTTAGAGATCACAAAGCGACGTAAACTCATGGGTTTACCCACG TATATGTTGTTCGTGGACCTCAAGAAGGCATATGACACGGTGCCGCAGGA AGCCCTTATGGCGAAACTCGACTTTTATGGAGTGAGGGGACGCACACTCG GGTTTATTCGAGCTCTTTACTCCCAAAGCCGTATCCAGGTACGGGTAGGG GGAACCGTGTCGGAACCAGCCGACCTCCTTCGGGGGGTTCGACAAGGGTG CCCCCTGTCGCCTGTTCTGTTCAACATATTCATTAATGATGTGATGGATG GGGCAGAACGTTCGGGGGTCCCAGTGCGCATGAAAGGGGGGGTAAAAACA CGCATTCCAGCATTACTGTTTGCGGATGACCTGGTTGCCCTTTCGAGATC CCGTAAGGGTATTGAGAGGATGACCAGACAGGTTACAGAATGGACGGCTG AGAATGAGATGAGTGTAGGGATCCAAAAGTGCGGAATAATGGTTGTGAAC AAGCCGCTCAGCATGCTTCACCAAACCCCGGCCCGATGGCAAATAGCGGG GCAACTTGTACCGATCGTCAGCGAGTATACGTACTTGGGGTTACGCTTTA CGGCAGACCTCGATGTGCCTTCAATGCTGAGTGATAGGGTTGCCAAAGGG AAGAGGTTGGTGGACACGCTAACACCGTTCTTGCGTACACGGGTGATTCC GGTACCAATGAAGGTGGCGGTGGTTAGAGGAGTGGTCATTCCGCGGCTGT TGTTTGGAGCTGAAGTCTATGGCATGAATAAGGCCATCACTGAGCCCATG CAGGTCCTGCTAAACCAAGTTTGGCGGATGGTCGGGGGGATGAATCGCAA TTCGACCGTCTCAACTGTTGCCATATGGAGAGAAATGGGAACGCCCCTAT ATGTGCGATGGCGGCGGCGCGAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig108:4971..6443-

>mRNA_A-nodosum_M_contig108.1.1 ID=mRNA_A-nodosum_M_contig108.1.1|Name=mRNA_A-nodosum_M_contig108.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1473bp|location=Sequence derived from alignment at A-nodosum_M_contig108:4971..6443- (Ascophyllum nodosum dioecious)
TCCGGATCCCTTCTAACAGAAGTAACTGCCATCTCGGCAGCGTGGCGCGA
TCACTATGGGCGACTTGCGGCTGACCCTACGGGGAACAGCCAATCACCGG
ACCGGTGGACGCGGTGGGGACAATGCCCTCAGAGAAAGCACCTCGAGTAC
TTAGACGAGGACATCCCGTACACGGAGATGTTGGAGGCCCTAAATCGGAT
TCGAAGAAACAAGGCACCAGGACAAGATGGGATTCCCGCTGACTTACTTA
AGTTGGCGGTGGCTGAGGAACCGACCCCTATGGGGAACGCGCTCTTAGCC
GTGCTGAACCAGATGTGGAAGTCGAGCACCATACCTTCGGCTTGGCGCAA
CTCAACAGTAGTTTCGATACCCAAAAAGGGGGACCTTACGGATATGGGAA
ACTACCGAGGAATATCCCTGATGGCCACAGCACTTAAGGTGCTAGTGGTC
GTCCTCAGCAACCGGCTTAACGGGGCGTTTGAGAAAGAGGGAATATTCAG
CAAAGCCCAAGCAGGCTTCCGGAGGAAGGAAGAATGTGTCACCCAAAGTG
CCTGCCTTTTAGAGATCACAAAGCGACGTAAACTCATGGGTTTACCCACG
TATATGTTGTTCGTGGACCTCAAGAAGGCATATGACACGGTGCCGCAGGA
AGCCCTTATGGCGAAACTCGACTTTTATGGAGTGAGGGGACGCACACTCG
GGTTTATTCGAGCTCTTTACTCCCAAAGCCGTATCCAGGTACGGGTAGGG
GGAACCGTGTCGGAACCAGCCGACCTCCTTCGGGGGGTTCGACAAGGGTG
CCCCCTGTCGCCTGTTCTGTTCAACATATTCATTAATGATGTGATGGATG
GGGCAGAACGTTCGGGGGTCCCAGTGCGCATGAAAGGGGGGGTAAAAACA
CGCATTCCAGCATTACTGTTTGCGGATGACCTGGTTGCCCTTTCGAGATC
CCGTAAGGGTATTGAGAGGATGACCAGACAGGTTACAGAATGGACGGCTG
AGAATGAGATGAGTGTAGGGATCCAAAAGTGCGGAATAATGGTTGTGAAC
AAGCCGCTCAGCATGCTTCACCAAACCCCGGCCCGATGGCAAATAGCGGG
GCAACTTGTACCGATCGTCAGCGAGTATACGTACTTGGGGTTACGCTTTA
CGGCAGACCTCGATGTGCCTTCAATGCTGAGTGATAGGGTTGCCAAAGGG
AAGAGGTTGGTGGACACGCTAACACCGTTCTTGCGTACACGGGTGATTCC
GGTACCAATGAAGGTGGCGGTGGTTAGAGGAGTGGTCATTCCGCGGCTGT
TGTTTGGAGCTGAAGTCTATGGCATGAATAAGGCCATCACTGAGCCCATG
CAGGTCCTGCTAAACCAAGTTTGGCGGATGGTCGGGGGGATGAATCGCAA
TTCGACCGTCTCAACTGTTGCCATATGGAGAGAAATGGGAACGCCCCTAT
ATGTGCGATGGCGGCGGCGCGAA
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