mRNA_A-nodosum_M_contig10790.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10790.6.1
Unique NamemRNA_A-nodosum_M_contig10790.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10790.6.1 vs. uniprot
Match: D7G1F5_ECTSI (Amino acid/polyamine transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 8.840e-31
Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    4 NFLVATGTRDLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFSRTLGALKYTATLAIGLVIFLSGMVLSFLVVPRLDACP 261
            ++LV  G  DLMPT M  ILG SHP+S+  +R VWVT GFLLAAPLAFSRTLGALKYTATLAIGLV+FL+GMV+SFLV+P LDACP
Sbjct:  145 SYLVVIG--DLMPTAMDDILGRSHPDSVLRDRHVWVTIGFLLAAPLAFSRTLGALKYTATLAIGLVVFLAGMVMSFLVLPGLDACP 228
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BLAST of mRNA_A-nodosum_M_contig10790.6.1 vs. uniprot
Match: A0A7S1TS32_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TS32_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.460e-13
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    4 NFLVATGTRDLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFSRTLGALKYTATLAIGLVIFLSGMVLSFLVVPRLDAC 258
            ++L+  G  D+MP  M  ILGD  P   WL R+ W+ AG+LL  P+AF++TL ALK+T++ A+ +V+ +  M + + V P LD C
Sbjct:  206 SYLIVVG--DMMPDAMKFILGDDGPP-FWLSRQTWIVAGWLLVVPMAFAKTLDALKFTSSFAVAVVMGVVAMTILYAVDPDLDGC 287
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BLAST of mRNA_A-nodosum_M_contig10790.6.1 vs. uniprot
Match: A0A835YKE8_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.770e-9
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:    4 NFLVATGTRDLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFSRTLGALKYTATLAIGLVIFLSGMVLSFLVVPRL 249
            ++L+  G  DL+P  +  +L +    +L L R  W+T   +  APLA  R+LGALKYTATLAIG   FL  MV+++  VP L
Sbjct:  110 SYLIVIG--DLLPDAVEGLLKERAAPAL-LSRHFWITTAMVWIAPLAAQRSLGALKYTATLAIGFAFFLVSMVVAYAAVPSL 188
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10790.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1F5_ECTSI8.840e-3174.42Amino acid/polyamine transporter n=2 Tax=Ectocarpu... [more]
A0A7S1TS32_9STRA8.460e-1342.35Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A835YKE8_9STRA3.770e-943.90Transmembrane amino acid transporter protein-domai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10790contigA-nodosum_M_contig10790:12791..13921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1F5
Preferred nameAVT7
PFAMsAa_trans
Model size261
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005302,GO:0005310,GO:0005313,GO:0005326,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0006950,GO:0006995,GO:0007034,GO:0007154,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0015075,GO:0015171,GO:0015172,GO:0015173,GO:0015174,GO:0015175,GO:0015179,GO:0015181,GO:0015183,GO:0015189,GO:0015194,GO:0015238,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015800,GO:0015801,GO:0015802,GO:0015804,GO:0015807,GO:0015809,GO:0015813,GO:0015817,GO:0015819,GO:0015825,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0022889,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0031667,GO:0031668,GO:0031669,GO:0032329,GO:0032974,GO:0032975,GO:0033554,GO:0034220,GO:0034486,GO:0034490,GO:0034491,GO:0042221,GO:0042493,GO:0042594,GO:0043090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051938,GO:0055085,GO:0061459,GO:0070778,GO:0071496,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071944,GO:0089709,GO:0090454,GO:0090513,GO:0090514,GO:0090515,GO:0090516,GO:0090517,GO:0090518,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098852,GO:1901474,GO:1901481,GO:1901482,GO:1902022,GO:1902023,GO:1902024,GO:1902475,GO:1903400,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990822
Exons2
Evalue1.45e-31
EggNOG OGsCOG0814@1|root,KOG1305@2759|Eukaryota
Descriptionamino acid transmembrane transporter activity
Cds size261
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866463.8795342-CDS-A-nodosum_M_contig10790:12790..129601680866463.8795342-CDS-A-nodosum_M_contig10790:12790..12960Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10790 12791..12960 +
1680866463.894197-CDS-A-nodosum_M_contig10790:13830..139211680866463.894197-CDS-A-nodosum_M_contig10790:13830..13921Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10790 13831..13921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10790.6.1prot_A-nodosum_M_contig10790.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10790 12791..13921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10790.6.1

>prot_A-nodosum_M_contig10790.6.1 ID=prot_A-nodosum_M_contig10790.6.1|Name=mRNA_A-nodosum_M_contig10790.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp
FNFLVATGTRDLMPTVMSQILGDSHPESLWLERRVWVTAGFLLAAPLAFS
RTLGALKYTATLAIGLVIFLSGMVLSFLVVPRLDACP
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mRNA from alignment at A-nodosum_M_contig10790:12791..13921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10790.6.1 ID=mRNA_A-nodosum_M_contig10790.6.1|Name=mRNA_A-nodosum_M_contig10790.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1131bp|location=Sequence derived from alignment at A-nodosum_M_contig10790:12791..13921+ (Ascophyllum nodosum dioecious)
TTTAATTTTCTCGTCGCGACCGGTACCAGGGACCTGATGCCGACAGTCAT
GTCGCAAATCCTGGGAGATTCGCACCCGGAGTCACTGTGGCTGGAGAGGC
GTGTCTGGGTCACCGCGGGATTCCTGCTCGCGGCTCCTTTGGCCTTCAGT
CGAACCCTCGGAGCCCTCAAGTGCGCGCCATTAAAAAACACAAACAAACA
AAAAAGCATGAAATTGCTTTTTGTTTTTTTCGGTGGGGCGAGAAAGATTT
GTGCGAGTTTTTTTATTGTTTTTCCGCTTCCGGATATTAAAAAAAAAAAT
CCCTCTCAACTTTTTTTTTGTGTGCGTGTTTGTGTGCATATTTATTTAAT
TGCGCATATAACCGCGCAATCCGGCCCTGTCACCCTATTAATAGTCATTG
TATGCTATTAATACTATACTATACACTATGTACTATACACAATGTACTAT
ACTAGCATTGGTCCTCCCGAGGGGGGGAATCACAATGTGTGAGAATTGTG
TGGGGGGAGAGGGTTTATACGTGAGTGGTTGGGAAGGGTTTACAGGGGAC
AGGGGACATGTTATCAAAGGCATCTCTTGGGTGGCACGAACGGAAGTCGT
GTATTGCGATGGGATTTGCGATGATGCTATCCATACATACATATAAAAAT
ACACTCAATAAAATAATACGATCGGAGATGAGGGCGAAACAAACTGTACA
ATATAATCCCTTCCCAGGCCTTGCCGAGCCTGTCTTTGTGCGTACAAACG
AGGCAGTCTTTGAGCGCTGCGCGGAAACAGAAGGATTTTTTTTAATCTTT
TTTCTTTAATATCATTATTTTTTTGCTTTTCTTTGTATAAGAGACAAGAG
GTAGGTAATAAACCCAAATCGTTTTTAAAGAAAAAATTGAACACATCTAA
ACTTTTCCTTCTGATATTCAAAAATTTATTCGTGCGTCCTCTTTCGATCT
ATGTCCGGAACCATAATGGAAATATGTAACACTCGAAGCCACTTGATAAA
CGCCCCTCGCCCCTCCCCCTCCAAAACAAAAATCGGCCAGATACACCGCA
ACACTAGCCATAGGCCTGGTTATCTTTCTGTCGGGGATGGTGCTGTCCTT
CCTCGTGGTCCCGAGGCTCGACGCCTGCCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10790:12791..13921+

>mRNA_A-nodosum_M_contig10790.6.1 ID=mRNA_A-nodosum_M_contig10790.6.1|Name=mRNA_A-nodosum_M_contig10790.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig10790:12791..13921+ (Ascophyllum nodosum dioecious)
TTTAATTTTCTCGTCGCGACCGGTACCAGGGACCTGATGCCGACAGTCAT
GTCGCAAATCCTGGGAGATTCGCACCCGGAGTCACTGTGGCTGGAGAGGC
GTGTCTGGGTCACCGCGGGATTCCTGCTCGCGGCTCCTTTGGCCTTCAGT
CGAACCCTCGGAGCCCTCAAATACACCGCAACACTAGCCATAGGCCTGGT
TATCTTTCTGTCGGGGATGGTGCTGTCCTTCCTCGTGGTCCCGAGGCTCG
ACGCCTGCCCA
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