mRNA_A-nodosum_M_contig1077.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1077.9.1
Unique NamemRNA_A-nodosum_M_contig1077.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1077.9.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 7.360e-7
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:    4 NGQLQQRWYVSAKELQLVCVNVCVACRELETSQIVVTNYTPPHLW-----RRRDVEKHAKKITHSRLPAIRVRAITW 219
            +GQ ++RWYVS  ELQLV + VC ACR ++T  + V   TPP LW           +  K    SR+P ++   +TW
Sbjct:   22 DGQ-EKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTW 97
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1077.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNI6_9PHAE7.360e-738.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1077contigA-nodosum_M_contig1077:250112..250368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size257
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866463.1679955-CDS-A-nodosum_M_contig1077:250113..2503681680866463.1679955-CDS-A-nodosum_M_contig1077:250113..250368Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1077 250114..250368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1077.9.1prot_A-nodosum_M_contig1077.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1077 250114..250368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1077.9.1

>prot_A-nodosum_M_contig1077.9.1 ID=prot_A-nodosum_M_contig1077.9.1|Name=mRNA_A-nodosum_M_contig1077.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
RNGQLQQRWYVSAKELQLVCVNVCVACRELETSQIVVTNYTPPHLWRRRD
VEKHAKKITHSRLPAIRVRAITWKRSIDELSKKRV
back to top

mRNA from alignment at A-nodosum_M_contig1077:250112..250368-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1077.9.1 ID=mRNA_A-nodosum_M_contig1077.9.1|Name=mRNA_A-nodosum_M_contig1077.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=257bp|location=Sequence derived from alignment at A-nodosum_M_contig1077:250112..250368- (Ascophyllum nodosum dioecious)
CGAAACGGACAGCTGCAACAGCGATGGTACGTGTCAGCCAAGGAGCTTCA
GCTCGTGTGCGTGAATGTGTGCGTCGCTTGCAGGGAACTTGAGACGTCAC
AAATCGTTGTAACGAATTACACACCACCTCACCTCTGGCGACGGCGAGAC
GTAGAAAAGCACGCGAAGAAGATAACTCACTCGCGCTTGCCAGCGATAAG
AGTTAGGGCCATCACGTGGAAGAGATCGATTGACGAGCTATCAAAGAAGA
GGGTGCT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1077:250112..250368-

>mRNA_A-nodosum_M_contig1077.9.1 ID=mRNA_A-nodosum_M_contig1077.9.1|Name=mRNA_A-nodosum_M_contig1077.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig1077:250112..250368- (Ascophyllum nodosum dioecious)
CGAAACGGACAGCTGCAACAGCGATGGTACGTGTCAGCCAAGGAGCTTCA
GCTCGTGTGCGTGAATGTGTGCGTCGCTTGCAGGGAACTTGAGACGTCAC
AAATCGTTGTAACGAATTACACACCACCTCACCTCTGGCGACGGCGAGAC
GTAGAAAAGCACGCGAAGAAGATAACTCACTCGCGCTTGCCAGCGATAAG
AGTTAGGGCCATCACGTGGAAGAGATCGATTGACGAGCTATCAAAGAAGA
GGGTG
back to top