mRNA_A-nodosum_M_contig10761.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10761.1.1
Unique NamemRNA_A-nodosum_M_contig10761.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: D7FQZ4_ECTSI (Acetohydroxy-acid reductoisomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ4_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.170e-9
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VFEKQRI LGGTE+D+VKGGRDLF LLP AF   E I  + 
Sbjct:   72 VFEKQRIALGGTEEDVVKGGRDLFELLPTAFEGIEKIGVVG 112
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: A0A3M1JFW5_9CHLR (Acetohydroxy-acid isomeroreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1JFW5_9CHLR)

HSP 1 Score: 53.9 bits (128), Expect = 3.260e-7
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VFEK++IVLGGTE+ IV+GGR LF LLPKAF   + I  I 
Sbjct:    9 VFEKEKIVLGGTEEYIVRGGRHLFPLLPKAFEGIKQIGVIG 49
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: A0A7C4ZZ08_9CHLR (Acetohydroxy-acid isomeroreductase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4ZZ08_9CHLR)

HSP 1 Score: 53.5 bits (127), Expect = 4.460e-7
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VFEK++I+LGGTE+ IV+GGR LF LLPKAF   + I  I 
Sbjct:    9 VFEKEKIILGGTEEYIVRGGRHLFPLLPKAFEGIKQIGVIG 49
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: W7TPK9_9STRA (Acetohydroxy-acid reductoisomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPK9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.460e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VF+K  I LGGT+++IVKGGRDLF LLP+AF   + I  I 
Sbjct:   73 VFKKTPISLGGTQEEIVKGGRDLFPLLPQAFEGIKQIGIIG 113
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: A0A6N2E7T7_9SPIO (Acetohydroxy-acid isomeroreductase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6N2E7T7_9SPIO)

HSP 1 Score: 50.1 bits (118), Expect = 7.470e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VFEK++I L GTE+ IV+GGR LF LLPKAF   + I  I 
Sbjct:    9 VFEKEKISLSGTEEYIVRGGRHLFSLLPKAFDGVKTIGVIG 49
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: A0A804JK35_MUSAM (Ketol-acid reductoisomerase n=3 Tax=Musa TaxID=4640 RepID=A0A804JK35_MUSAM)

HSP 1 Score: 48.9 bits (115), Expect = 1.910e-5
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VF+K++I L G ++ IVKGGRDLF+LLP AF   + I  I 
Sbjct:   87 VFKKEKITLAGHDEYIVKGGRDLFYLLPDAFKGIKQIGVIG 127
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: A0A7C3J7K1_9CHLR (Acetohydroxy-acid isomeroreductase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3J7K1_9CHLR)

HSP 1 Score: 48.9 bits (115), Expect = 1.910e-5
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VFEK++IVLG T + IV+GGR LF LLPKAF   + I  I 
Sbjct:    9 VFEKEKIVLGDTVEYIVRGGRHLFPLLPKAFDGIKQIGVIG 49
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: A0A8J5KMK2_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KMK2_ZINOF)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VF+K+++ L G E+ IV+GGRDLF LLP+AF   + I  I 
Sbjct:   83 VFKKEKVTLSGNEEYIVRGGRDLFHLLPEAFKGIKQIGVIG 123
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: A0A1F6CZS7_HANXR (Acetohydroxy-acid isomeroreductase n=1 Tax=Handelsmanbacteria sp. (strain RIFCSPLOWO2_12_FULL_64_10) TaxID=1817868 RepID=A0A1F6CZS7_HANXR)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VFEK+ + L GT++ +V+GGRDLF LLPKAF     I  I 
Sbjct:    9 VFEKKALNLAGTQEHVVRGGRDLFKLLPKAFEGIRQIGVIG 49
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BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Match: A0A8B5WX23_9SPIO (Acetohydroxy-acid isomeroreductase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A8B5WX23_9SPIO)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADIS 123
            VFEK++IVL  TE+ IV+GGR LF LLPKAF   + I  I 
Sbjct:    9 VFEKEKIVLADTEEYIVRGGRHLFPLLPKAFEGVKQIGVIG 49
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10761.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ4_ECTSI1.170e-968.29Acetohydroxy-acid reductoisomerase n=2 Tax=Ectocar... [more]
A0A3M1JFW5_9CHLR3.260e-763.41Acetohydroxy-acid isomeroreductase n=1 Tax=Chlorof... [more]
A0A7C4ZZ08_9CHLR4.460e-760.98Acetohydroxy-acid isomeroreductase n=1 Tax=Anaerol... [more]
W7TPK9_9STRA5.460e-658.54Acetohydroxy-acid reductoisomerase n=2 Tax=Monodop... [more]
A0A6N2E7T7_9SPIO7.470e-658.54Acetohydroxy-acid isomeroreductase n=1 Tax=Spiroch... [more]
A0A804JK35_MUSAM1.910e-553.66Ketol-acid reductoisomerase n=3 Tax=Musa TaxID=464... [more]
A0A7C3J7K1_9CHLR1.910e-558.54Acetohydroxy-acid isomeroreductase n=1 Tax=Anaerol... [more]
A0A8J5KMK2_ZINOF2.620e-551.22Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A1F6CZS7_HANXR2.620e-553.66Acetohydroxy-acid isomeroreductase n=1 Tax=Handels... [more]
A0A8B5WX23_9SPIO2.620e-558.54Acetohydroxy-acid isomeroreductase n=1 Tax=Spiroch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10761contigA-nodosum_M_contig10761:9482..9610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQZ4
PFAMsIlvC,IlvN
Model size129
Max annot lvl2759|Eukaryota
KEGG rclassRC00726,RC00836,RC00837,RC01726
KEGG koko:K00053
KEGG ReactionR03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0030312,GO:0031967,GO:0031975,GO:0036094,GO:0042221,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0046983,GO:0048037,GO:0048046,GO:0050661,GO:0050662,GO:0050896,GO:0070402,GO:0071944,GO:0097159,GO:1901265,GO:1901363
Exons1
Evalue1.91e-10
EggNOG OGsCOG0059@1|root,2QQBF@2759|Eukaryota
EC1.1.1.86
Descriptionketol-acid reductoisomerase activity
Cds size129
COG categoryEH
BiGG ReactioniRC1080.CRv4_Au5_s10_g343_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866463.0564866-CDS-A-nodosum_M_contig10761:9481..96101680866463.0564866-CDS-A-nodosum_M_contig10761:9481..9610Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10761 9482..9610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10761.1.1prot_A-nodosum_M_contig10761.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10761 9482..9610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10761.1.1

>prot_A-nodosum_M_contig10761.1.1 ID=prot_A-nodosum_M_contig10761.1.1|Name=mRNA_A-nodosum_M_contig10761.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=43bp
VFEKQRIVLGGTEKDIVKGGRDLFFLLPKAFGDFENIADISF*
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mRNA from alignment at A-nodosum_M_contig10761:9482..9610-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10761.1.1 ID=mRNA_A-nodosum_M_contig10761.1.1|Name=mRNA_A-nodosum_M_contig10761.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at A-nodosum_M_contig10761:9482..9610- (Ascophyllum nodosum dioecious)
GTGTTCGAGAAGCAGCGCATCGTCCTTGGGGGCACCGAGAAGGACATCGT
AAAGGGGGGTCGCGATCTCTTCTTTCTGTTGCCCAAGGCCTTCGGCGATT
TTGAAAATATCGCGGATATTTCGTTCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10761:9482..9610-

>mRNA_A-nodosum_M_contig10761.1.1 ID=mRNA_A-nodosum_M_contig10761.1.1|Name=mRNA_A-nodosum_M_contig10761.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=129bp|location=Sequence derived from alignment at A-nodosum_M_contig10761:9482..9610- (Ascophyllum nodosum dioecious)
GTGTTCGAGAAGCAGCGCATCGTCCTTGGGGGCACCGAGAAGGACATCGT
AAAGGGGGGTCGCGATCTCTTCTTTCTGTTGCCCAAGGCCTTCGGCGATT
TTGAAAATATCGCGGATATTTCGTTCTGA
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