mRNA_A-nodosum_M_contig1076.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1076.4.1
Unique NamemRNA_A-nodosum_M_contig1076.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1076.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1076contigA-nodosum_M_contig1076:194619..198447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size285
Hectar predicted targeting categoryother localisation
Exons3
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866462.8212533-CDS-A-nodosum_M_contig1076:194618..1948061680866462.8212533-CDS-A-nodosum_M_contig1076:194618..194806Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1076 194619..194806 +
1680866462.8293657-CDS-A-nodosum_M_contig1076:197738..1977961680866462.8293657-CDS-A-nodosum_M_contig1076:197738..197796Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1076 197739..197796 +
1680866462.8441274-CDS-A-nodosum_M_contig1076:198409..1984451680866462.8441274-CDS-A-nodosum_M_contig1076:198409..198445Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1076 198410..198445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1076.4.1prot_A-nodosum_M_contig1076.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1076 194619..198445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1076.4.1

>prot_A-nodosum_M_contig1076.4.1 ID=prot_A-nodosum_M_contig1076.4.1|Name=mRNA_A-nodosum_M_contig1076.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=94bp
ANCLKHLSPQSVKNEVKLTASERRSTSRINGISQDHLFTIISVARIHIYI
LKASKSTPGVRLRTWTKMTAKHWQHEVRCSFEPSVPVPHTPGTR
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mRNA from alignment at A-nodosum_M_contig1076:194619..198447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1076.4.1 ID=mRNA_A-nodosum_M_contig1076.4.1|Name=mRNA_A-nodosum_M_contig1076.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3829bp|location=Sequence derived from alignment at A-nodosum_M_contig1076:194619..198447+ (Ascophyllum nodosum dioecious)
GCAAACTGCTTGAAGCATTTAAGCCCACAGTCAGTAAAAAACGAGGTCAA
GTTAACTGCGAGTGAAAGACGATCTACATCGCGGATCAACGGCATCTCAC
AGGACCACCTATTCACAATCATCAGTGTGGCTCGAATACACATCTATATC
TTGAAGGCATCGAAATCTACCCCTGGTGTTCGTCTGCGGTACGTGGCAGG
GTATATGTTGCGTAATACGCCCATTCCGGTCATGATTGTAACTTATTATC
GTTTGAATGTGGGCAATCGGGACAGTCTTGAAGCAGGTTACTCCTTAGCA
CCAAGCAGATGCAATCAATATGTTTGTTTTCATCCAGGATGTCGTTGCGT
GAGTGTCGCATCTTGACATTCCGTATCAGAATAACTACAAACAGCCCTGA
CATCATGGTTTGAGTACTCCGAACATAACGTATCAGAGCGTGCATAACTA
GTGGTGGCGTAGGCAAGCTGCTTGCAACACTTAAGCTCACAGTCAGTAAA
AAACGAGGTCAAGTTAACTACGAGTGAAAGACGATCTACATCGCGGATCA
GCGGGACCTCACAAGTCCACACATTCACATAATCAATGTGGCTCGAATAC
ACCTCAATATCGTCTAGGCATTAAGCCTATAACTGCAACCCCTGCTGCTC
GTCTGCGGTACGTGGCGCGTTACGTGGTGCATAATACGCCCATTCTAGGC
ATGATGATTGCAACTTATAATCGTTTGAACGGGGGCAAGCGGAACTGTCT
TGGAGCAAAATACTCTTTAGCACCAAGCAGATGCCATCAATGGTACGTAC
GACTAGTATTAATGGCATTATAGTATCGATAGTACTGTAGCAACATTACG
ATCAGTAGGAAGTTAACACAAATCTGAAATAATTTCCATATCAAAGGTGT
GGACGTTTCTCCCCCACCGCGGCCTAGCATCACCATCCACTACTAATATA
AATGCCATATTGATGATGATAATGTCCCATGAATCTAGATCACTACCTCA
AGGCATCGAGCCTCCCAGTCCGGGCACACCCTTGCATAGAAACAAAACAA
AGATCGCTGGGTTAGACAATACCTGCGTTCAACCCGCTTCCATTAAACGC
GGCCCTGCAACAAAAAATCACCCCTGGGCTCTATGACAGCCTTCGGTTCT
TTCAACATGTCGTCCACTCTATTATACCAATAGTGGATGTGGAAAAAGAG
AGGCGCACATTAATTGGTCCAAGTTGACCTGCAAAGGCAGCTCCCTTTAC
TAGAACTATCTTGAGGACTACTGGCTCTGTGCTGGCTGACTCTCGGCAGT
GTACGCCGTCTGTACACAATTGCGTGATGACCCGATAAACTCTGGAACTT
ACCCGACGGCGTATTGCCTATGGCGGTATAAACTGCCCTTTTCAGGGTTC
ACCATGGACCATTTTTTTTTTGTCTCTCTTTTCTCACGCCATACATTGAT
TGATCGATTGGATTCTCACATAAGCTGATGTCAAAAGTCCAGCCCGTGCA
GCGTGGTCATAAGGTAGAAAAAACACCATCCGGAAGGAAAGAACGTACGA
CGTACTCTCCGTACAAAGAGAAAGCGGAAATGGTACAAAAAAATACTCGG
AATGTACGATATCTCCAAAGAAAGAAAAAAGAAAAAAGAAAAAGAAAGAA
ACACGTGTGGCTATCGGGACGCAGCCTGCATATCGAAGGAGGATTGAACG
AAGGGCCGCGGCTTCAACGAAAGCATATAGACGAAAACGAAGCAAAACAA
AACAAACGTAACACCAGAGAAAAACGCCATGGCATTTGCAAACGAAAAGC
CCGGAGGATAGAAGTTCGCGCCACTTGTGGCTAGTCAACAAGAGCGAGCG
AACCAGCACGAGCCCGCTTGCTTTGGGCTATCCTCTTCTTGGTCCTTCCC
GTCACGTTCGGGCATACCACTGCATGCCGTAGTCCAGCCCTGGTTTTCTC
TGCAACGGTCCATTTCGCCATGAAATGTTCCGCCCCTTGTTCTGCCGTTC
TGCGCCATTTCCCCTCGTCCTGGGCTGCAGTCGTCCACTGGTAGGCGTTG
ATGCCGAAAGCTCTAAGATCATCCAGGAAACACCCCATCCACTCTCTTTC
CTGGCCCCCGACACAGCCCGCGCCCCCCCACCATTTCTCCGAACATCACG
CACTTCGGCAGTCTCGTATCCTCCATGCGCGCCACAAATCCCGCAAACAA
GATCCGCCTCCTGCGTAAAGTCGCCTCGATGCTCTTACTTCCCGTCTTGA
CAAGCGTGTCCAGACAGGAAATCGGGTGGTCGGCGCGATTGTGCTTTCGC
CAACCAATGCAGCGAGTCAAGAACCTGTGGTGGGCTCGGCGCAGCGTGTC
GTAGTGGCACGCGCGCGGGCTCTACGTGACGCAGTCATACAGCATTGTCT
CGAGTACCTCGGCCCTTAGCATCCGGATTTTGAGCTCGAGGGGAGCGCTC
GGTCGGTCGTACAGTTCGAGGGTGTACTTCCGGAAGCTGCACCATGCGTT
GCGTGCGCGCCAGTCGACCTCGATGGACAGGTCGGGATTTTGGTTGACGT
TTCCCCCGAGGGATGCAAACTGTTCGTCTGATTGTACACCTGGCCCGCTG
CCTCTACGCTGAATGTGGCGGTGGACTCCGGCATCTCCTTTCCGCGTAAA
CACATGATCTCAGTCTTGGCCTCCGATACGGCGAGAATGCCGCGCACACG
ACCGCTATCACCCCTATCATCTTCCTCAACTGCTCGGGTGATTGCGATGC
CCACTATTGGTGACTGTACGTGTGTGGTCCATAAAGTATCGGTAATGTAT
GTATGTATGTATCGTCGTCACATATAACAAAAGGGTAAGGATCAAACGGG
TAAGGTTGCCGATCCTGCTCATGGTCAGCTGAACAGGGAAACTGAACATT
TGCCTGTTCCCGTTCGTGCCTGAGAACTTGGTCTCGCGAGACGGATTCGG
CAGCCCCGTCCCGCGTCAGCCTGGTCATCTCCATACTCAAGCTGAATATG
GTGCTTACTTACGTGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTATT
TATTTATTAAAACCGCCATACGCCACTGCACCTCGACTGCATCGTTTCGC
TTGAAATACCCGTCGCGCAGCACCTGGACGAAGATGACGGCAAAGCACTG
GCAGCATGAAGTCCGGTGCTCCTTTGAGGTGGGTGTTACTGTTGAGCTAC
TTACTCGTGTCAGAAGCATGAGCGAAACACATTACCGGTACCATTTTATG
TACTTGGAGTATTGAAGCAATGTGCGGAGTTCATATCAGATTTGAACAGG
TCCCGAACGTGTTCGTGCGCGAAGCGAATTTCGTCCTTACCCCGTCCCCT
CCTGAACATGCACCACTATGTGTCGTTTCTCCCGGATCCGTTTTTTTTTC
GCTCGTTTCCTTTTTCGTCTGCAAGCTCGAATGTTTTGAAATCTCGCAAT
ATCGATATTTCAAGCGTGTTTCGTCTCAATTCCTACCTACCCTCATGATC
TCTGGTTTTCGTGTTTGGTCCTCTCGCGGACTGGACAACATAAAATGTCG
CTCGCGACACTTTCTCAACCCTATTTTTGTATCCGTTTGTATGTCTTCAC
ATGTGTCGCTTCTTGCTCTGACGACTTTTTGCCAGCTGGGCGAGGGGGGG
GTGATGGCCCGCAACGCGCGGTAGCGTTGAAGCGCACGTTCGAGTACAAG
CTTTGCGAGGTCACCCTCGTTTTGTCGGCGTTCACGAGGTTCACAACTCG
AAGTCCTACGACTGCCTCGTCTTACTCTTCTCCGACAGTAGCCATCTGTG
CCAGTGCCGCACACTCCAGGTACTCGGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1076:194619..198447+

>mRNA_A-nodosum_M_contig1076.4.1 ID=mRNA_A-nodosum_M_contig1076.4.1|Name=mRNA_A-nodosum_M_contig1076.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at A-nodosum_M_contig1076:194619..198447+ (Ascophyllum nodosum dioecious)
GCAAACTGCTTGAAGCATTTAAGCCCACAGTCAGTAAAAAACGAGGTCAA
GTTAACTGCGAGTGAAAGACGATCTACATCGCGGATCAACGGCATCTCAC
AGGACCACCTATTCACAATCATCAGTGTGGCTCGAATACACATCTATATC
TTGAAGGCATCGAAATCTACCCCTGGTGTTCGTCTGCGCACCTGGACGAA
GATGACGGCAAAGCACTGGCAGCATGAAGTCCGGTGCTCCTTTGAGCCAT
CTGTGCCAGTGCCGCACACTCCAGGTACTCGG
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