|
|
Homology
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: D7FPB2_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB2_ECTSI) HSP 1 Score: 348 bits (893), Expect = 2.730e-119 Identity = 176/183 (96.17%), Postives = 179/183 (97.81%), Query Frame = 3
Query: 144 MSRDSNYDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK--VDPAGHYFPYKATSSGSKEQEAMNWLEKKV 686
MSRDSNYDHQIT+FSPQGRLYQIEYAFKAAMG GLTSVSVRGK+TSVMVTQKKVPDRLIDPTSVTNIFKIT+KIGCLMTGMIADSRVLVQRLRYEAHEFRFK GYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK VDPAGHYFPYKATSSGSKEQEAMNWLEKKV
Sbjct: 1 MSRDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKGVVDPAGHYFPYKATSSGSKEQEAMNWLEKKV 183
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: A0A835YUN1_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN1_9STRA) HSP 1 Score: 305 bits (782), Expect = 2.040e-102 Identity = 147/184 (79.89%), Postives = 164/184 (89.13%), Query Frame = 3
Query: 144 MSRDSNYDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGSKEQEAMNWLEKKVTLL 695
MSRDSNYDH ITIFSPQGRLYQIEYAFKAA SGLTSV+VRGKD V+VTQKKVPDRLIDP SVTN+F++T+++GCLMTGM AD+R VQRLRYEAHEFRFK GYD P LARR ADI QVYTQQAS+RALACVA+L+AVDDEKGPQ+FKVDPAGH+FPYKA +SG+KEQEA+NW EKKV L
Sbjct: 1 MSRDSNYDHHITIFSPQGRLYQIEYAFKAASSSGLTSVAVRGKDACVVVTQKKVPDRLIDPASVTNLFRVTDRVGCLMTGMTADARASVQRLRYEAHEFRFKYGYDVPVGTLARRFADICQVYTQQASLRALACVALLVAVDDEKGPQVFKVDPAGHFFPYKAAASGAKEQEAVNWFEKKVDTL 184
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: A0A7S2XVL7_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVL7_9STRA) HSP 1 Score: 275 bits (702), Expect = 3.150e-90 Identity = 130/180 (72.22%), Postives = 156/180 (86.67%), Query Frame = 3
Query: 147 SRDSNYDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGSKEQEAMNWLEKKV 686
+RDSNYD I+IFSPQGRLYQIEYA KAA SGLTS++VRG +T +VTQKKVPDRLIDP SVT+++++ KIGCLMTGM AD+RV+VQRLRYEA E+RFK+GYD P HVLARR+AD++QVYTQ A +RA+A +L VDDEKGP LF++DPAGHY P+KATS+G+KEQEAMNWLEKKV
Sbjct: 3 ARDSNYDRYISIFSPQGRLYQIEYAKKAANSSGLTSIAVRGAETCALVTQKKVPDRLIDPESVTSLYQVNNKIGCLMTGMTADARVVVQRLRYEAAEYRFKHGYDVPVHVLARRLADLSQVYTQHAGIRAMAATTILAGVDDEKGPMLFRIDPAGHYLPFKATSAGAKEQEAMNWLEKKV 182
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: A0A7S2WQZ1_9STRA (Proteasome subunit alpha type n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQZ1_9STRA) HSP 1 Score: 267 bits (683), Expect = 2.420e-87 Identity = 130/180 (72.22%), Postives = 153/180 (85.00%), Query Frame = 3
Query: 147 SRDSNYDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGSKEQEAMNWLEKKV 686
SRDSNYD ITIFSPQGRLYQ+EYA KAA +GLT+V+VRG ++ MV QKKVPDRLIDP+SVT +++ITEKIGCLMTG+ AD RV V RLR EAHEF+F GYD P HVLA+RIADI+QVYTQ+AS+R LAC +L +VDDEKGPQLFK+D AG +FPYKAT++GSK EAMNWLEK+V
Sbjct: 3 SRDSNYDRHITIFSPQGRLYQVEYAIKAAENTGLTAVAVRGANSCAMVIQKKVPDRLIDPSSVTYVYQITEKIGCLMTGLTADCRVQVTRLRQEAHEFKFNYGYDMPVHVLAKRIADISQVYTQEASLRMLACNVILSSVDDEKGPQLFKIDSAGSFFPYKATAAGSKAAEAMNWLEKRV 182
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: K8YP06_NANGC (Proteasome subunit alpha type n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YP06_NANGC) HSP 1 Score: 266 bits (679), Expect = 8.870e-87 Identity = 132/179 (73.74%), Postives = 151/179 (84.36%), Query Frame = 3
Query: 150 RDSNYDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGSKEQEAMNWLEKKV 686
RDS YDH ITIFSPQGRLYQIEYAFKAA GLTSV+VRGK+ +VTQKKVPDRLIDP+SV+NI++IT+K+G +MTGM DSR V RLR EAHEFRFK GYD P HVLA+RIADIAQ QASMRALA V ML+ VDDE+GPQL+KVDPAGH+FP+KAT++G K+ EA NWLEKKV
Sbjct: 4 RDSQYDHHITIFSPQGRLYQIEYAFKAANSEGLTSVAVRGKECVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIAQ----QASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEATNWLEKKV 178
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: A0A4D9D8R2_9STRA (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8R2_9STRA) HSP 1 Score: 280 bits (715), Expect = 9.730e-86 Identity = 136/183 (74.32%), Postives = 156/183 (85.25%), Query Frame = 3
Query: 138 VNMSRDSNYDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGSKEQEAMNWLEKKV 686
+ RDS YDH ITIFSPQGRLYQIEYAFKAA GLTSV+VRGK+ +VTQKKVPDRLIDP+SV+NI++IT+K+G +MTGM DSR V RLR EAHEFRFK GYD P HVLA+RIADIAQVYTQQASMRALA V ML+ VDDE+GPQL+KVDPAGH+FP+KAT++G K+ EA NWLEKKV
Sbjct: 25 IMSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSEGLTSVAVRGKECVAVVTQKKVPDRLIDPSSVSNIYQITDKLGAVMTGMTTDSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEATNWLEKKV 207
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: A0A7S2C157_9STRA (Proteasome subunit alpha type n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C157_9STRA) HSP 1 Score: 261 bits (668), Expect = 5.410e-85 Identity = 125/182 (68.68%), Postives = 150/182 (82.42%), Query Frame = 3
Query: 138 VNMSRDSNYDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGSKEQEAMNWLEKK 683
NMSRD+NYD ITIFSPQGRLYQ+EYA KAA +GLT+V+VRG D+ +V QKKVPDRLIDPTSVT +++IT KIGCLMTG+ AD RV V R+R EAH+++F GYD P HVLA+RIADI QVYTQ+AS+R LAC ++ +VDDE GPQ+FK+D AG YFP+KAT+SGSK EA NWLEKK
Sbjct: 7 TNMSRDANYDRHITIFSPQGRLYQVEYALKAADSTGLTAVAVRGADSCALVIQKKVPDRLIDPTSVTYVYEITPKIGCLMTGLTADCRVQVTRMRQEAHQYKFDYGYDMPVHVLAKRIADICQVYTQEASLRMLACNVIIASVDDELGPQIFKIDAAGSYFPFKATASGSKHMEATNWLEKK 188
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: A0A7S2VZ72_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZ72_9STRA) HSP 1 Score: 259 bits (663), Expect = 2.810e-84 Identity = 129/182 (70.88%), Postives = 153/182 (84.07%), Query Frame = 3
Query: 144 MSRDSNYDHQITIFSPQGRLYQIEYAFKAAMG-SGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGSKEQEAMNWLEKKV 686
MSRDSNYDH I+IFSPQGRLYQ+EYAFKAA SGLT V++RGKDT +VTQKK+PDRL+DP SVT+IF IT KIGCL+TG++ D + +QR RYEA +F+F+NGY P HVLARRIADIAQV TQ ASMR LA V +LI VDDE+GPQ+FKVD AGH+ P+ AT+SGSKEQEA+N+LEK V
Sbjct: 1 MSRDSNYDHHISIFSPQGRLYQMEYAFKAASSASGLTGVAIRGKDTCCVVTQKKIPDRLMDPKSVTHIFNITPKIGCLITGIMPDCKAQIQRARYEAADFQFQNGYSIPVHVLARRIADIAQVNTQSASMRPLATVCLLIGVDDERGPQVFKVDCAGHFLPFLATASGSKEQEAVNFLEKSV 182
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: F0W2W5_9STRA (Proteasome subunit alpha type n=2 Tax=Albugo TaxID=65356 RepID=F0W2W5_9STRA) HSP 1 Score: 256 bits (654), Expect = 5.530e-83 Identity = 125/175 (71.43%), Postives = 147/175 (84.00%), Query Frame = 3
Query: 162 YDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGSKEQEAMNWLEKKV 686
YD ITIFSP+GRLYQIEYAFKA GSGLTSV+VRG D+ V +TQKKV D+LIDP SVT+IF+IT +IGCLMTGM AD++ VQRLRYEA+EF FK GY P +VLA+R ADIAQVYTQ ASMRA V MLI +DDEKGPQL+K+DPAGH++ YKATS+G EQ+A+N+LEKKV
Sbjct: 6 YDRHITIFSPEGRLYQIEYAFKAVQGSGLTSVAVRGMDSCVFITQKKVQDKLIDPESVTHIFQITAEIGCLMTGMYADAKAQVQRLRYEANEFAFKFGYSVPCYVLAKRAADIAQVYTQHASMRAFGVVTMLIGIDDEKGPQLYKIDPAGHFWGYKATSAGKNEQQALNYLEKKV 180
BLAST of mRNA_A-nodosum_M_contig1073.18.2 vs. uniprot
Match: H3G9M2_PHYRM (Proteasome subunit alpha type n=26 Tax=Oomycota TaxID=4762 RepID=H3G9M2_PHYRM) HSP 1 Score: 256 bits (653), Expect = 7.850e-83 Identity = 124/175 (70.86%), Postives = 149/175 (85.14%), Query Frame = 3
Query: 162 YDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVTQKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGSKEQEAMNWLEKKV 686
YD ITIFSP+GRLYQIEYAF+AA S LTSV+VRGKD++V VTQKKV D+LI+P SVTN+F+IT +IGCLMTG+ ADS+ VQRLR+EAHEF K GY P HVLA+RIAD+AQVYTQ ASMRA + ML++VD+EKGPQLFK+DPAGH++ YKATS+G KEQEA N+LEKK+
Sbjct: 6 YDRHITIFSPEGRLYQIEYAFRAAKESTLTSVAVRGKDSAVFVTQKKVQDKLIEPDSVTNVFQITPEIGCLMTGLYADSKAQVQRLRFEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLVSVDEEKGPQLFKIDPAGHFWGYKATSAGVKEQEAQNYLEKKI 180
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D7FPB2 |
| Preferred name | PSMA6 |
| PFAMs | Proteasome,Proteasome_A_N |
| Model size | 698 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K02730 |
| KEGG Pathway | ko03050,map03050 |
| KEGG Module | M00337,M00340 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000502,GO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0005840,GO:0005844,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010468,GO:0010498,GO:0010499,GO:0010556,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014706,GO:0016020,GO:0016363,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030016,GO:0030017,GO:0030071,GO:0030163,GO:0031090,GO:0031323,GO:0031326,GO:0031331,GO:0031347,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0035639,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0042788,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050727,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051247,GO:0051252,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060537,GO:0060538,GO:0061061,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1903506,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2000112,GO:2001141,GO:2001252 |
| Exons | 5 |
| Evalue | 6.83e-121 |
| EggNOG OGs | COG0638@1|root,KOG0182@2759|Eukaryota |
| Ec32 ortholog description | Nucleophile aminohydrolases, N-terminal |
| Ec32 ortholog | Ec-15_004060.2 |
| EC | 3.4.25.1 |
| Description | threonine-type endopeptidase activity |
| Cds size | 555 |
| COG category | O |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01002,ko03051 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866460.8683274-CDS-A-nodosum_M_contig1073:175752..175854 | 1680866460.8683274-CDS-A-nodosum_M_contig1073:175752..175854 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1073 175753..175854 - |
| 1680866460.8797383-CDS-A-nodosum_M_contig1073:176609..176815 | 1680866460.8797383-CDS-A-nodosum_M_contig1073:176609..176815 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1073 176610..176815 - |
| 1680866460.8919933-CDS-A-nodosum_M_contig1073:177469..177551 | 1680866460.8919933-CDS-A-nodosum_M_contig1073:177469..177551 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1073 177470..177551 - |
| 1680866460.9038153-CDS-A-nodosum_M_contig1073:177895..177990 | 1680866460.9038153-CDS-A-nodosum_M_contig1073:177895..177990 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1073 177896..177990 - |
| 1680866460.9170582-CDS-A-nodosum_M_contig1073:185326..185396 | 1680866460.9170582-CDS-A-nodosum_M_contig1073:185326..185396 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1073 185327..185396 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866460.9283223-UTR-A-nodosum_M_contig1073:185396..185539 | 1680866460.9283223-UTR-A-nodosum_M_contig1073:185396..185539 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1073 185397..185539 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1073.18.2 >prot_A-nodosum_M_contig1073.18.2 ID=prot_A-nodosum_M_contig1073.18.2|Name=mRNA_A-nodosum_M_contig1073.18.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=185bp
MSRDSNYDHQITIFSPQGRLYQIEYAFKAAMGSGLTSVSVRGKDTSVMVT QKKVPDRLIDPTSVTNIFKITEKIGCLMTGMIADSRVLVQRLRYEAHEFR FKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLF KVDPAGHYFPYKATSSGSKEQEAMNWLEKKVTLL* back to topmRNA from alignment at A-nodosum_M_contig1073:175753..185539- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig1073.18.2 ID=mRNA_A-nodosum_M_contig1073.18.2|Name=mRNA_A-nodosum_M_contig1073.18.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=9787bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:175753..185539- (Ascophyllum nodosum dioecious) GTGTACGGGGACTTCTGTTTTGTCTTGGACGAGTCGAGAACTACAGAGGA
AGTTTTCAGTAATTATCAATCGCTCTTGAGCCAGGGTTGCTTTCCGAGCC
TTGAGCAGCGAGGAGACACAAGGCAGCTGCTGATAACGTGAACATGTCCA
GAGATTCGAACTACGACCACCAAATTACGATCTTCTCTCCTCAGGGAAGG
CTGTACCAAATAGGTGAGGGAGGATCCTGAAGCGAGAACACAAACGTAAC
ATTGTTGAAGGACTTGTTCTTGCAATATACAAATGCTTGCATTATGTGTT
CTACAGTAAAGTAAAGCTATGTCTGCATACAGTAACTACTTTCAGTAGAG
TGTTGACACCGTAAACCGGGTATGGTTTACAGAATATCTAAACCTTCTAA
ACATCCACCCAATCGAGGGGTCCATGGTTACCTGCGAAGGCAACACTCGT
TCGGAACTACCTTGAGGTTTACTGGCCCTGTGCCTGCGGACTCTCGGCAG
TGAACGCCATCGGTACGCAATTTTGCAATTTTGCGTGACCCGATAAACTC
GGGACTGACCCGATGGCGTATGGCGGTTTTAAATAAATAAATGGACGCTG
CCGCGGAACTCGGGAGGAATCCCGCGAGAAGGCACCAGATTCAGCCTGAG
TATGGAGATGAGCAGGCTAACGCGGGACGGGACTGCCGAACCCGTCTCGC
GAGACCAAATTCTCAGGCGCGAACGGGGACAGGGATATATCCATTTTCTC
TAATCAGCTGACCACGAGCAGGATTGGTAACCTTACCCGGTTGATACATA
GTTTTGCTATATGTATGACCAAACATACAATACATTGTCAAAACGTTTAG
GTTGGAACACAAGCTGCAGGCTGAATTTGGTGCCTACTCACGGGATTCCT
CCCGATTTCCGCGGCGGTGTCCATTTATTCAAACCGCCACACGCCATCGG
GTTAGTCCCGAGTTTATCGAGTCACGCAATTGCGTACCGATGGCATTCAC
TGCCGAGAGTCCGCCGGCACAGAGCCAGTAAACCTCAAGGTAGCTCCAGT
AACGGGTGCTGCCTTTGCATCACCATGAATCAATTAATATGCGCCTCTCT
TTCCCACACCCACGTTTGGTATGAAGTGGGCACGTTGAAAGTATCAGCCG
AAGTGGACATGTGAGCTCTCAATCAAGGAAAATATTAAACAGCACTGCTG
TTGAGAGACGAGGAAGCTGAGTTGAACAGCTGTGCTCTGTACGTGTGTAT
GTAGCAATGCTTCTGAAACACTGCTGTATTGCTTTTCCAGCTCGAGGACT
GTCGAATTATGGGACGCCGCTCGTGAGACTTGTGTTTCATGCGAACCACG
CATTGGCAGGAAAGACCCTTCAATCTCGATTGGGGAAGAGTTCTCCGGCC
TATCGTGTCTGTTCTCATGCTGAGGGAACCATTCCCGCGAGGCTTAATGG
TCGAGAGGAAGAATTCGTGCGGCATATGATCGTGTGAAGTCGGGTCTTGG
AGACAACTCTTGCCTATTAATGCAACAGCATTTACAGTATCATTAGTATC
CTCCCCCACGCTGAGTCGCCGCAGTCCGCACGAGCAGTGCCCCGCGAAGT
GCCTGGCGGCGCTGGGCATAATAAACCTCGGTTTACGTCCAGCGGAGTTG
CCAGTGGCCCATGGCGCCAACTTGGTAAGAAGAGATCCCCGGCTAGCCAA
TATCATGATAGTGCATCTTCCATGTTGCCTATGGCATCATCCATGTCCGT
GGTCTCTCGTCCACCCCTGCGTCTTCGGCTGATGGTATGTACATACAATG
TACGTGTGTGTGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCACG
CAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCGTTGATCCTC
CCGAGGGGGGATCAATGATACTTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGGTATTTATTAAATTGCACATAACCGCGT
AAACCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCC
CAAGGGGGGATCAATGATACTTATTACGAAAACCTCTGATCAGACGCGAC
AAGGGTGTGTGTGTGTGTGTGTTGTCATCCCATTTATTCTGGACGTCAGG
CTTGTGGACGTACCAGCCAGAGTAACACAGGAGGAAGGACACAGGATTTC
TCTACCTTCCTTCTGCGGTGCTTGCCTTAGCTGTTCTCGCGAAGAAGATT
GTTCGTGTGACTGCACCGAGATTCGAACTCACGTCCCAACGTCAGAAGGT
TTCGAGGTCACCAACTGAACCACCAGGGCGAGACCGGCTGTGCACTCGGT
TTGTGCAAGGAGTCCGTCGTATACACTGTTTATATCTGTACTTTTTTAAT
ATAGTAGTATTAATACTAGTATGATGGTTGCTAGGTTGAGCCGCATTTTG
GCTCTTTTAGTTGGTCACTTTTATCCTTTTATACAAGAAGTGCTCTTGGC
GCAAAAAGTTTTCTTAGACAAGAAAGAGCCGGGGGGAGGGGGGGGGGCAA
AAAAAATCGTCACTATTGTTTAAAGAAAAATCTGAACTCATCTAGACCTT
CTGAGCATCATCCCTCAGTCAAGCTATAAGTAGTAACAAGCGATGTGGAT
ATCCACTGGAAACCCGTGTGTGAGTAAATCCTATTAATGATGAGTAAATG
TTTCCTCTGCCTCGAGGTATTATTGGTAGGTCTGACTGTTAATAGATGAT
GTTTGATTACCTGCAAGATGAAGATACGCGTCAACTTTAGTCTACTGTAT
ATATAGAGAGTTCGATCCCGGCAAACGGGATTTTTCTCACTAAAAAACTA
AAAAAACAAAATAAAAATGCCCAACGGGTGGAGAACGATTAAATCGTTAG
TACACAAAATTCGACTTTACGGTCGACGAGGGAAAGGAATGGCTGAATCC
TTCTCGCGACAAAAATTAAGGCACGCACCGCAGAAAGAAGGTGGATAAAA
AATCCTGTGTGGCCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCAACGA
ACTTGATGTCCATAATGAATGGGAAGAAAACACACAAACACATATACAAT
ATCTTAGTTTCTTGCGCATTTCTTAAAAATGTACGTTCGACCTAATTTAG
TCCACTAGAAGTCATGGAGTCATCCTGCCGCAAGAGTCCCCTGGCTTTCT
AATTAATTAAGATAAGGCTTCGTGTGCAGTGACGAGATTCGATTTAGCGG
GGAGCTTTTGATGTAGTTGTATTGATTTATATTTGTCGCTTGGAAACAAA
ATAAAATACATGAACTTCATCCCGTATGGGGCGCGCGCCTCTACGAGGTG
ACACACTTGAAATGGATGTATGGAACATTGTAACGGATATTTTTCGGAAA
TTCTAATTCCAAGTGGGACGTTTTTATTCCTACTCGTGCGAGTACGGTAT
ACCTGGTACGAAATATGTATGTACTTTACAATACTAGTATTTATAGTTGG
TGCGAGTGTTTACCCAGGGGTTCTGATTGATGTCGACCCTTGCTCCCGAT
CAGGCCATGGCACGTGCTACTTAACCAAGCACACCCAGCAACGCGGTCCA
TTCATTTTCCCCATTATTAATCCGTGCCGCGATGGATTCATCAAGTCATT
GGATGCTGCATCTCCTCATCCCTTCATTTTTGAAGATTCTGACCTTTCAT
CATTGATTGCCTCAGCGTTCGTCACGCCTTTCCTCTTGAGATTAGAACTC
GGGGCGTCTCCTAAAACCGTACTGTAACAGATTAAATATAATAGTCGGGG
TCTATTGCTAGAGCTTTAGATGTATCCCGTAGTCTGCAATTGGTGGTGAA
GGTTGCGTTGCCACCTTGGCCACAAAGGCGCGATAGCACCGTTTGTGTAA
TCGTGCCCTCTCGGTCCGAAACCTGTTTTTGAGGTACGTGCGTGGAGGGG
AGGGGAGGGCAGGGGGGGGGAGGGTCTTCGCGGCGAGTGCAGGGCTAGAT
TCACCCGCAAGAGGGGACACACCAACTGGCTGTCTCCTCGATTTAGATAT
CAGATTTTCAGCCTGAGTGAGGAGAATGAGCAGGCTGACGTGGGATGGGT
CAGCCGAACCCGTCTCGCGAGACCAAATTTCCAGGCGCGAATGGGGACAG
GGAAATAATTATTTTTCCCTTTTCAGCCGACCACGAGCAGGATTGGCAAC
CTTTTATCCTGTTGATCTATTCTCTGCTATATGGGACGACCATGCATACA
TACATGCAGTCAGATGTAACGGGTTGGTTGACAAGCGCTGGCGGTTTGGT
TGGCAAGCGGGAGTGGGAGTGGTAGTGGATCGGTTGCATGAGGAGGGTGT
TTGCATCTTTGTATCAGGTGCGCCTTCCCCGAACGCCAATTTAATGCGCC
CTTTGGGAGGTGGCGGCACTCGGGGGTAAAAGTGGCTGCTCTCGTGGAAA
ACCTCGTATTCAATAGGATGTTGCAGCACGCGCAAGAGTACTGCTGCACG
TATGCTAGCGGGTGAGTAAGCACGATATTCGGCCAGGGTGAGGGGTGAGG
GATGAGGGATAGCTCCGCCGTCGACGAGGCAAGGGAGTAATAAACCCTTG
TGCGCGCGAGAATGACGGGCGAGAACCGGGAGGATTTTAAAAGAGAGAGC
TGATTTCTGACCTCGCACTAATTTTTCCCTTCGAGAGCCAACCTGGAGCG
GCGATCGGACAAGATTCCTTGGTGCTTTTCTAAGAGTTGAGGGCTTTTGA
CAGGAGGATGCCGGCTGGAGCGCTGGGTTCACAGCTCATCAAGGCCTCCA
TCACTATGGAACTCCATTCTACTGCGCGACGGAACCCTTGAGGAACGCGG
GTTTTGTTGATCGAACTGATCGGAGCGTCACTATTCCGCTTTGCAGCCAA
GAGGTCTGACTGTTTGGACGTGCGTAGGCAGCAGCAGCCGTAGGACTGAC
TGTTTGTGTCGCCGTAGTCTTGTGTTGCGAGGACAAGGCGCTCAAAGCTT
TTCCGTTTTTTTGTGTATCTTGCTTGCTCTCGAGGGGGCTAAATAGTTTG
CAAGCTTACCAGTCGCACCTACTGCTAAAGTCGACCATTCTGCATGCAGT
CTCGACGGAGGGATCTAGCTACATATACATCGCTCCCCGGTCCACGCTTA
CGATGTTATTTATTTATTTTTTTCCCCTGAGAAATTCTGCACACACGAAA
GCCTTACACAAAAAAAACTGTGAACGGTTCCAAGTAGGTACGGTACTGTT
GTTATTGTCGGTACAACCTATGCTCCCACCCAAACGTTTTGATGATGCGT
CTTCCCTTATTGGGTGGATGCTCAAGGTTTATAGATGCTTTTAGATTTTC
CTTGAACATGAGGAAAAAAAAGTAACGGTTTCGGTTGTGAAGAGCAGGCG
CCTCACTTCTGTATTACTATATATGTAATGTGCTGCAGCAGTAGGTAGGC
TACTGTACTGTACTGTACTGTTCTCGCAGCAAAAGTCGGTTACAGAGTGT
ACCGTGGCGGGCAGAGCGGATAAAAAAATCGCGCACGAACACAACACACC
CCAGCGTCAGGCAGGGCTATCAGTTGATGGAGGTGTGGAGGTTGCCGCTC
GCGGGAAGGAGAGCAGTGCTTTTGAGACACCGAGGGTGTAGAGGGGCATC
TGCGGAGATAACGTTTTGTCACCAAGACATGTATTGCCTTGCTTCTTGGC
GCTTTTATTTCAAAGAAAATCGGAACGCATCTCAGCCTTCTGATTCATGA
GTATCCACCCCGCCAGGGGAGGAAAATTGTCAACACGCTTATTTCGATGG
GAACATAGTAGGCTGTAACTGTAAGGACACAAACTCTTGTCGCCGCCTAA
GCTGTTCAAACGTTTAGGCGAGAGGCCAACTGCCCAGCAGGATTGCCTGG
GACATGGGACATGTAGATGGGTCCATGGTGCGGGCGTGTGGCGGAAGGAA
GCCTTAGAGCGTCGCGCGCAATAGTCCTGTGCAAATGGAGAGGACCCTGG
CTTTGGTAGGGTGTGTATCCCCGGGCCCCGAAACAGGTTAAAGCCTCCTC
CATTTGGACATTTTTTTTTACTCTAGACTATATATACATATATGTCCCAT
TGAACAAGTCAAGCAATTATAATAGTATTCATAGTCTAATCGTGCACATC
CTGTAGAGAGAATTATAGACATTATTCATAATGCAGGGTGATTGCGTATA
GCCACGTGCTATTGATAGTACCAGTTATGTCCGTCTGTGAAGGTGTAATG
CTGTTATGTTGGAATTGAGTTCTTGGGTGCTTCGCTTTAATCGTAAAAAA
AAACTTGTCAGATGGTTTTCCGATCTTAGCTCCTCTGTGTGGATGTGTGC
GTGTAAATATTAAATTGCACATAACCGCGCAATCCGGCCCTGTCATCCTA
ACGATAGTCATTCTGTGCCACTCGCATTGATCCTCCCAAGGGGAGATCAT
CAGACAGCTTTCTCTGTAGCTTGTAGTTCGTACTCAAAAACATGATATTG
ACGCGGATAAGTTTCCGATGTTCTCGGTTGGTTGGACCTGGCAAGGGTTT
TGTCGCGATTAGGATCCCTGTTGGTTTGAGTAGCGGACTGTCACCACGAC
GTGGCCCGTTGACCTTCGTGCCTCTTTGTAACCACAAGCGAGATTGACAT
TTGATAGGTCTATGGCTGACTTGTTGTGACACCGTAGTTTCTTTAATTGC
AAGGATAATACGCTGAATGCGTGAATCAACAAGAATTATACGTATTACGA
AAACGTGTGTGTGTATTGATTAAATTGCATATAACCGTCCAATCCGACCC
TGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCAATGGGGAA
TCGGTTATACTTATTACGAAAACCTCTGATTAGACGTGACAAAGGGGACA
CACTCTCTCTACTTGGACAGTTCTTACTTAAACCCTGGGTACATCGTGCT
TCCCCCCGGCTTCCTATGCTATCGTCTAGATTATCTGTGTGTGTGTGTAT
TGTATGTGTACCGTTCAGCAGTTTGGGCATCAACGGTGTATGGTATGGTA
TGGTATGGTATGGTTGTCAATCCTGTGTTTTTCCCTTGTGGTCAGTTGAA
CAGGGAAATAACGTGAATTTTCCCTGTCCCCCTTCGCGCCTTAGACTTGG
TCTCTCGAGACGATTCGCGTGAATTGTATGTTTGTTCTCTGTTTAAAATA
TAATGCGACGTACGACGTAGTTCAAGCCAAACGAAGCGTTTTGCTGCTCC
AACGCCGCTCAGAAATCTGTCACACCGGACTTAAGCTATCCTCTCTGCCC
TCTCGAAAGTGGTGAAGTAAACAGCGAGTTTCGACGTACCGTATGAAAAT
TTTAGATGCAAAGCCCTGGTAAGGGTGGCTTTCCCCTTGGAAATGAAAGC
GTAGAAATACACTCGTACTACTCCGGTACGTTTCCGAATTGACGGATTCA
GATAAATCACGCGAATATTTTGATTTCGCATTTGGTTCGACTGTACGCGC
GTGTCTCCAACGCCTTCCGCTGAATGGCCGATCGCACCCGACGCCGCAGA
GTATGCGTTCAAGGCTGCCATGGGGTCAGGGCTTACTTCGGTCTCGGTCC
GGGGGAAGGACACGAGCGTCATGGTGACGCAGAAGAAAGTTCCGGTAAGA
TTATCTGCACGACGGCCACCGGTCGCCCTCATATGTTGTCCCTCGTTGTC
GAGGCCGCCCGCAGCTTGGACTATGTTGGCCTGGTCAGCCTAGGTGGTTG
CGCCTCTGGCCAACACTTGCCCGCTCTCATAACTTGCTACAATCCCTCCC
TTCCCTAACCCTCACAACACGCTCGTTGGTTCTACTTTTTTGGCCTGATA
TAGGCGGCGGCGAAAGGCGTACGCTTCACTCAAGAATCCCCCCCGCCGTC
CCCCCGCATTCATCCGAACCAACCCCTCCGAGTCTAGTCTCTCCATGAAC
GTCGTCCGCCTCTGTTTTTTTCCCCTTTTTTTCCGTAGGACCGGTTGATC
GACCCCACCTCGGTGACGAACATCTTCAAGATCACCGAAAAGATCGGGTG
CCTCATGACCGGCATGATTGGTGAGGGGGGAAACCGTGGTCGAGTTTTTT
GTGCTGAATGACGCACGGTGCCTGTTTCTCTCTCTCCGAAGTTGTTGGTT
TAGGCTGCTCTTGACGATGGCCAGGAACGTGAGAATGTACATGGACTCTG
TACGCCAAGTGACGTCGTGTCTACCCTGCTATTAATATTAAAAAGTTTTT
TTACTGTAGCGGGAGAGCGAAAACGGCAAAGAGGCGTCGTTTGAGAGAAG
AGACCAATCCTGCCTGACAGTACTACAACTATTGCATTGCACTCGTATTC
ATCAATAGGATTTATTCCAGTCTGAGTACAGTACAGTACAGTACAGTACT
CTTTTCGCTTTCTTTTATAAATATTAAAAAATGCTATGGACACCCATAGA
TTCTGAAACGTGTCGTCCGCCCTCGTTTTTCTCAGCCTATCAATAGGCAC
CTTGTGCGCAGCAGCCGAGGCATGAAAGTAAATAAACCTAGTCGCCTTCG
TGCCGTCTCTTGAACCTGTCGCCCTATCGCCCTATCACCCTTACGGCCCG
TCACCTCATCCCTCATCCCTTTTCCTCTCGTTGATGACCCCTCTCCCCTC
TTCCTCATGTTTGTGCTTTATTTCACCCGATATTGTCCTCCTCTTTTGGC
CCTCCCACGCACGGTCAATCTCAGCGGACTCGAGGGTGCTGGTGCAGCGG
TTGCGGTACGAGGCCCACGAGTTCCGCTTCAAGAACGGTTACGACTGCCC
CGCGCACGTGCTGGCCCGGCGCATCGCCGACATCGCGCAGGTGTACACGC
AGCAGGCGTCCATGCGCGCGCTGGCGTGCGTCGCCATGCTGATCGCGGTG
GATGACGAGAAGGGGCCGCAGCTCTTCAAGGTACTGGTGTAAGCCTTCTC
CTTGTCCCTTGCTTGGTTTTACTCCAATTTTGCCCTGCCGCGGTCTGTAA
CGTTTTCGGGTGTTGGTGTTTGTAGTGTGAGAGTAAATACTGCTGTGTTT
GTGCATTTTGGTGTGCGTATCCAACAGATTGTGTTCCAACAGTGTGTGCG
GTAAACGACGGAGTTTTTATTTTTGAATGCTTTTGTGAATGTGTGTGAGT
GTTAAACAAAATGCTCAAAAACCGCGCAATCCGGCCCAGTCATCCTAGTC
ATTTTATGCCACTCGCATTGGTCCTCCCAAGGGGGATCAATGATATTTCC
TACGAAAACCTCTGATCAGACGCGACAAAGGGGACACGCTCTTATCTCCT
TGTACACTTCTTACTTAAGCTTTGAGTGCCATGTGCCCCGCCCCTGCTTC
CATGTGTGTGTGTGCTTGTAACGAAGCGTGGTATTGTAATTCGCTGCTTA
TGTCAGCAATAAAGTAGCGTACTCGACACACAGGCAGCTTGTGTTTTTGC
TTCAGCCTAGCCTTGTGGTCAGCCACCCGCGTTCCTGCTTTTCCCTAACG
GACGGAGTGCCCTCGTCGGCGCCGGTTCGTCATAGCGCGGTGTACCGCGA
AACTATAATTATATCTCGTGGTATTCCCTTGAACGTTTGCCTTCGTTTCT
TATGCTTCCGCGTCGGTGTTAAAGTGTTGACATCTCACTTAATAAGGTAT
ACATATTGTGTTACCTGGTACGTATTTGCCACAAGGTGGACCCTGCCGGG
CACTACTTCCCCTACAAGGCCACCTCGTCCGGCAGCAAAGAGCAGGAGGC
CATGAATTGGTTGGAAAAAAAGGTGACGCTGCTTTGA back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig1073:175753..185539- >mRNA_A-nodosum_M_contig1073.18.2 ID=mRNA_A-nodosum_M_contig1073.18.2|Name=mRNA_A-nodosum_M_contig1073.18.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=555bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:175753..185539- (Ascophyllum nodosum dioecious) ATGTCCAGAGATTCGAACTACGACCACCAAATTACGATCTTCTCTCCTCA GGGAAGGCTGTACCAAATAGAGTATGCGTTCAAGGCTGCCATGGGGTCAG GGCTTACTTCGGTCTCGGTCCGGGGGAAGGACACGAGCGTCATGGTGACG CAGAAGAAAGTTCCGGACCGGTTGATCGACCCCACCTCGGTGACGAACAT CTTCAAGATCACCGAAAAGATCGGGTGCCTCATGACCGGCATGATTGCGG ACTCGAGGGTGCTGGTGCAGCGGTTGCGGTACGAGGCCCACGAGTTCCGC TTCAAGAACGGTTACGACTGCCCCGCGCACGTGCTGGCCCGGCGCATCGC CGACATCGCGCAGGTGTACACGCAGCAGGCGTCCATGCGCGCGCTGGCGT GCGTCGCCATGCTGATCGCGGTGGATGACGAGAAGGGGCCGCAGCTCTTC AAGGTGGACCCTGCCGGGCACTACTTCCCCTACAAGGCCACCTCGTCCGG CAGCAAAGAGCAGGAGGCCATGAATTGGTTGGAAAAAAAGGTGACGCTGC TTTGA back to top
|