mRNA_A-nodosum_M_contig10725.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10725.1.1
Unique NamemRNA_A-nodosum_M_contig10725.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10725.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10725contigA-nodosum_M_contig10725:6041..8546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size248
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866460.4564655-CDS-A-nodosum_M_contig10725:6042..62081680866460.4564655-CDS-A-nodosum_M_contig10725:6042..6208Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10725 6043..6208 -
1680866460.4685416-CDS-A-nodosum_M_contig10725:8466..85461680866460.4685416-CDS-A-nodosum_M_contig10725:8466..8546Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10725 8467..8546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10725.1.1prot_A-nodosum_M_contig10725.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10725 6043..8546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10725.1.1

>prot_A-nodosum_M_contig10725.1.1 ID=prot_A-nodosum_M_contig10725.1.1|Name=mRNA_A-nodosum_M_contig10725.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp
RIHGAERPRSSADGANGDCSSPAQEYRYARLHGIQLEGELAPCSGCSMAK
GIRASTPHHTTSRAAAPLDMVHIDTADRSRNH
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mRNA from alignment at A-nodosum_M_contig10725:6041..8546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10725.1.1 ID=mRNA_A-nodosum_M_contig10725.1.1|Name=mRNA_A-nodosum_M_contig10725.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2506bp|location=Sequence derived from alignment at A-nodosum_M_contig10725:6041..8546- (Ascophyllum nodosum dioecious)
AGAATACATGGAGCGGAGAGGCCGCGCAGCAGCGCCGACGGCGCCAATGG
AGACTGCAGCAGCCCCGCCCAGGAGTATCGGTATGTTTGTGCCGTCGACC
GTCCCAGAACTGAGAGGTCGTGAAAATTTGCCAACTTTCTGCAGCGCTTC
CGGACATGGGCTTCTATTAGCGGCTGTGATTCGGCACCTGACTCTGAAAT
AATTGTAAGAACTTCAGGGACCCCGCGTGCAGAGTTAGAAAGAGTGCACG
ACCCCAGACTGGTAGACATCTCACTGAATGCCTGGCAGTCACTAACTAAG
GCTTTAGAGAAAGAGCAAGAGTTGTTGAAGATGGTAATCCGGATAGGGTC
TATCTCAAGAGGCTTGGCGCGCTCTAACGAAAATCGCGAACGCGTCAGAG
GAGGTTGAATACGACAGAGCGAAACGCGAATTCGAAACACTTGAAATGGA
TGCAAGCGAGTCGGTTGCTGAGTTCTTCACACGTGTGCACGTAATTCTGA
TGGAACTTGAAAGACACCAGATCCCAATAACCGACCGCGAGATTCAACGC
ATTGTGCTTGAAGTTTGTCCCCGTTTCCTGCATGAGACTAGTATGCATGC
GTATAAAGGTGAATGTGATCTTAAAGACCTGGAGACTGGGCTTGCCTGAG
TGGAGAAGTTCCGGTCGGACCAGATCAAGAAGGGCGTCCCCACATGCGCT
AGCCGCTGCCTATACAGGCAGCAGCGGAGCGGGGCTGAGGTGGTACCCGT
GGACGAGGCAAGCGCTCAGGCAGGCGCTCGGGCAAGCGCCAAGACGATGG
TCGCGATGAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAGCCACA
TGGCAGCAGCAACAGTCAGCTCCCTGGCAGCAGCAGCAGTCAACCCCATG
GCAGCAGCAGCAGTCACCCCCATGGCAGCAGCAACGGACACCTGCATGGC
AGCAACACCAGCCGCCTGCATGGCAGCAACACCAGCAGCAACGGTCACCT
GCACAGCAGCAGCAGCAGCGGCGATATCCACAGCAGCAACAACAGCATCG
AGGACCACGCCAACAGCAGTCCAACCCGTGGGCCAGCTGGGAGAGCCCGC
CCGCTCAACAGTACCGAGCGGAGTGCCCCATCAAAGGAGACAACAGCATC
AGGGACGAGGACAGCCGCGCTGGCCGCGTGCCACGTGTCAGCGGTGCGGC
GAGGATGAACATTTCCCGCTGAGTGCAGCGCAGCTTCACGCGCTCCAGCA
CCGCAGCATCGGCAGTACGGCCCACCCACTCCAGCGTGGACAGCGCACGA
CAGTGATGGACATTCCTCGACTGCATCCAGCTATGGACCACCCCCATCAC
AAGCGAGCTGGACCACCCCATCACAAGCGAGCTATGGACCTCCACCATCG
CAAGCCAGCCATGAACCTGCCCCGCCAATGCCACGATCGCCTAGACCTGA
CGGACCACCTCCTGCGGCGCCCGATCTGAGTCCGACTGAGCTTCACCCGG
CCAATCCCAGGCTCTGCAGGCACAGTATGTGCCACCAGGCGAGTTTTCGA
GTCCGGATTTGAGTGATTGGCGTGCAGACGATGATAGTGTAGGTGGGAGT
TACCTTCCTCGGATTCGTTGGACAACCTGTAGGCATTGACCAGCTAGGGG
ATGTCTGATAGAGATAGCGGTGCGACTACACACATGACGCGAAATGCCGA
CCTCATGTACGACACTAAGCTCCCCCAAAGATCAAGGATCATCCTGGTGA
TGGTTCTATTAAAAAGGTACAATTCGTGGGCAAAACCGACTTGGTGTTCC
ACAGCAGGACCGATTACCAGGTCACCTTCACAATGTATCATTCGTGCCCG
ACCTAGACTTCAACCTGTTTTCGTTCCACGTTGTGCAGGAAAAGCACGAA
ATAATCCTAAACAAAACAGGAGCCCACTTGCTGGGTGGTCGTCTCGTGTT
CCCCGTAGGCGTAATGGGTCGTCTGCGCGCGCTACTAGAGTATTGCCGGG
TAGTCAAGCGAGCGCGAATAACGCACTTGCAACTTTTGTTGAGCCCTCCC
CCACAGTGTCGACGGACCCCCCTCTGGACCCCTTCCCTGTACCGTACAGT
ACTGTAACCCCCCCCGTTGTACACCAAACATCGGGTGTAAGCAGATCTTG
TAAGACGAGTAACGCGGGTACCGGTTTTGGGAGGAGAGTGGAGGTCTGCG
TCTGTTTCGAGGAAGGTGTTGGGATGGCCGCAGTGCTTTCTCCTGGTGGA
CTATTTGTAAACAAGAAGAAGACGACAGTGGTAGACATTAACCACTTCCG
TGTTTCCCTTGCCCATGCCCACTCGAGTGTATTGAAAGCTACGCTCGATT
GCACGGCATCCAACTTGAAGGAGAACTGGCTCCGTGTTCTGGATGTTCAA
TGGCGAAGGGGATCCGCGCATCGACACCGCACCACACCACGTCCCGGGCA
GCGGCTCCACTGGACATGGTCCATATCGACACCGCGGACCGTTCCCGGAA
TCATTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10725:6041..8546-

>mRNA_A-nodosum_M_contig10725.1.1 ID=mRNA_A-nodosum_M_contig10725.1.1|Name=mRNA_A-nodosum_M_contig10725.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig10725:6041..8546- (Ascophyllum nodosum dioecious)
AGAATACATGGAGCGGAGAGGCCGCGCAGCAGCGCCGACGGCGCCAATGG
AGACTGCAGCAGCCCCGCCCAGGAGTATCGCTACGCTCGATTGCACGGCA
TCCAACTTGAAGGAGAACTGGCTCCGTGTTCTGGATGTTCAATGGCGAAG
GGGATCCGCGCATCGACACCGCACCACACCACGTCCCGGGCAGCGGCTCC
ACTGGACATGGTCCATATCGACACCGCGGACCGTTCCCGGAATCAT
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