mRNA_A-nodosum_M_contig10720.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10720.3.1
Unique NamemRNA_A-nodosum_M_contig10720.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: A0A7C9EQE4_OPUST (Alpha-1,3-glucosyltransferase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EQE4_OPUST)

HSP 1 Score: 62.4 bits (150), Expect = 4.790e-9
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    3 ARKSGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAV 158
            A  S +P K  +  A + AM+LL PCLI+IDHGHFQYN + LGL VA  AA+
Sbjct:   13 AYSSANPRKGKNELAWLMAMILLNPCLIIIDHGHFQYNCISLGLTVAAIAAI 64
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BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: A0A7C9EUB2_OPUST (Alpha-1,3-glucosyltransferase n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EUB2_OPUST)

HSP 1 Score: 62.4 bits (150), Expect = 5.230e-9
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    3 ARKSGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAV 158
            A  S +P K  +  A + AM+LL PCLI+IDHGHFQYN + LGL VA  AA+
Sbjct:  149 AYSSANPRKGKNELAWLMAMILLNPCLIIIDHGHFQYNCISLGLTVAAIAAI 200
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BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: A0A6P6T5D0_COFAR (Alpha-1,3-glucosyltransferase n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6T5D0_COFAR)

HSP 1 Score: 61.6 bits (148), Expect = 9.500e-9
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:   12 SGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAV 158
            SG P K  ++ A   A++LL PCLI+IDHGHFQYN + LGL VA  AA+
Sbjct:   80 SGKPIKEKTSVAWHIALILLNPCLILIDHGHFQYNCISLGLTVAAVAAI 128
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BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: A0A6P6T5M2_COFAR (Alpha-1,3-glucosyltransferase n=5 Tax=Coffea TaxID=13442 RepID=A0A6P6T5M2_COFAR)

HSP 1 Score: 61.6 bits (148), Expect = 9.770e-9
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:   12 SGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAV 158
            SG P K  ++ A   A++LL PCLI+IDHGHFQYN + LGL VA  AA+
Sbjct:  165 SGKPIKEKTSVAWHIALILLNPCLILIDHGHFQYNCISLGLTVAAVAAI 213
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BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: A0A830D937_9LAMI (Alpha-1,3-glucosyltransferase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D937_9LAMI)

HSP 1 Score: 61.6 bits (148), Expect = 9.800e-9
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 3 
Query:   12 SGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAVSGGR 170
            SG PT   S+ A    M+LL PCLI+IDHGHFQYN + LGL VA  AAV   R
Sbjct:  176 SGKPTGDKSSMAWHAVMILLNPCLILIDHGHFQYNCISLGLTVAAVAAVISNR 228
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BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: UPI000F604698 (probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase n=1 Tax=Coffea eugenioides TaxID=49369 RepID=UPI000F604698)

HSP 1 Score: 61.6 bits (148), Expect = 1.010e-8
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:   12 SGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAV 158
            SG P K  ++ A   A++LL PCLI+IDHGHFQYN + LGL VA  AA+
Sbjct:  370 SGKPIKEKTSVAWHIALILLNPCLILIDHGHFQYNCISLGLTVAAVAAI 418
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BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: A0A4S4EK99_CAMSI (Alpha-1,3-glucosyltransferase n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4EK99_CAMSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.480e-8
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:   12 SGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAV 158
            SGS +   S  A   AM+LL PCLI+IDHGHFQYN + LGLAV  AAA+
Sbjct:  163 SGSRSGRKSDVAWHIAMILLNPCLILIDHGHFQYNCISLGLAVGAAAAI 211
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BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: A0A022RVU6_ERYGU (Alpha-1,3-glucosyltransferase n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RVU6_ERYGU)

HSP 1 Score: 60.5 bits (145), Expect = 2.490e-8
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:   12 SGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAV 158
            SG PT   S+ A    M+LL PCLI+IDHGHFQYN + LGL VA  AA+
Sbjct:  174 SGKPTGDRSSMAWHTIMILLNPCLILIDHGHFQYNCISLGLTVAAVAAI 222
[Close]
BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: A0A2G9G9N1_9LAMI (Alpha-1,3-glucosyltransferase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9G9N1_9LAMI)

HSP 1 Score: 59.3 bits (142), Expect = 5.210e-8
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 3 
Query:   12 SGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAV 158
            SG  TK  S+ A    M+LL PCLI+IDHGHFQYN + LGL  A  AA+
Sbjct:  168 SGKSTKEKSSMAWHTVMILLNPCLILIDHGHFQYNCISLGLTTAAVAAI 216
[Close]
BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Match: A0A7I8K098_SPIIN (Alpha-1,3-glucosyltransferase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K098_SPIIN)

HSP 1 Score: 59.3 bits (142), Expect = 6.320e-8
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 3 
Query:    6 RKSGSPTKAWSAAARMYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAVSGGR 170
            R  GS T  W     + AM+LL PCLI+IDHGHFQYN + LG  +   AA+  GR
Sbjct:  171 RGDGSVTHEW-----LLAMILLNPCLILIDHGHFQYNCISLGFMIGAVAAILSGR 220
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10720.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C9EQE4_OPUST4.790e-955.77Alpha-1,3-glucosyltransferase n=1 Tax=Opuntia stre... [more]
A0A7C9EUB2_OPUST5.230e-955.77Alpha-1,3-glucosyltransferase n=3 Tax=Opuntia stre... [more]
A0A6P6T5D0_COFAR9.500e-957.14Alpha-1,3-glucosyltransferase n=1 Tax=Coffea arabi... [more]
A0A6P6T5M2_COFAR9.770e-957.14Alpha-1,3-glucosyltransferase n=5 Tax=Coffea TaxID... [more]
A0A830D937_9LAMI9.800e-958.49Alpha-1,3-glucosyltransferase n=1 Tax=Phtheirosper... [more]
UPI000F6046981.010e-857.14probable dolichyl pyrophosphate Man9GlcNAc2 alpha-... [more]
A0A4S4EK99_CAMSI2.480e-861.22Alpha-1,3-glucosyltransferase n=2 Tax=Camellia sin... [more]
A0A022RVU6_ERYGU2.490e-859.18Alpha-1,3-glucosyltransferase n=2 Tax=Erythranthe ... [more]
A0A2G9G9N1_9LAMI5.210e-857.14Alpha-1,3-glucosyltransferase n=1 Tax=Handroanthus... [more]
A0A7I8K098_SPIIN6.320e-850.91Alpha-1,3-glucosyltransferase n=2 Tax=Spirodela in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10720contigA-nodosum_M_contig10720:2257..2599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4081.Solyc02g085860.2.1
PFAMsAlg6_Alg8
Model size343
Max annot lvl35493|Streptophyta
KEGG koko:K03848
KEGG ReactionR06262
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG ModuleM00055
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031984,GO:0034645,GO:0036211,GO:0042175,GO:0042281,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046527,GO:0070085,GO:0071704,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue1.04e-08
EggNOG OGsKOG2575@1|root,KOG2575@2759|Eukaryota,37RK3@33090|Viridiplantae,3G9JQ@35493|Streptophyta,44IXF@71274|asterids
EC2.4.1.267
DescriptionDolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase
Cds size147
COG categoryEG
CAZyGT57
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866460.2544832-UTR-A-nodosum_M_contig10720:2256..23061680866460.2544832-UTR-A-nodosum_M_contig10720:2256..2306Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10720 2257..2306 +
1680866460.3870556-UTR-A-nodosum_M_contig10720:2453..25991680866460.3870556-UTR-A-nodosum_M_contig10720:2453..2599Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10720 2454..2599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866460.3755927-CDS-A-nodosum_M_contig10720:2306..24531680866460.3755927-CDS-A-nodosum_M_contig10720:2306..2453Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10720 2307..2453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10720.3.1prot_A-nodosum_M_contig10720.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10720 2307..2453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10720.3.1

>prot_A-nodosum_M_contig10720.3.1 ID=prot_A-nodosum_M_contig10720.3.1|Name=mRNA_A-nodosum_M_contig10720.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=49bp
MYAMVLLQPCLIVIDHGHFQYNSVCLGLAVAGAAAVSGGRFQGGETDR*
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mRNA from alignment at A-nodosum_M_contig10720:2257..2599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10720.3.1 ID=mRNA_A-nodosum_M_contig10720.3.1|Name=mRNA_A-nodosum_M_contig10720.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=343bp|location=Sequence derived from alignment at A-nodosum_M_contig10720:2257..2599+ (Ascophyllum nodosum dioecious)
CGGCACGGAAGTCAGGCAgCCCCACGAAAGCTTGGTCGGCGGCAGCAAGG
ATGTACGCTATGGTGCTCCTGCAACCATGTCTTATCGTGATCGATCATGG
TCACTTTCAATACAACTCGGTGTGCCTGGGTCTGGCTGTGGCGGGTGCGG
CGGCGGTGAGCGGGGGACGATTTCAAGGCGGTGAGACAGACCGATAATGT
ACCACCGGCAACGCTCGCTCACTCAGTTGCCCCTCAATTCGGTGCTCTCG
TTCAGTGCTCTCGATTCAGTGAATTCATTCGGCGCCCTCCCTCAGATTAT
TTCGTCTGCACCGGTAACATAATCTTATGACGTCAGCCCACAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10720:2257..2599+

>mRNA_A-nodosum_M_contig10720.3.1 ID=mRNA_A-nodosum_M_contig10720.3.1|Name=mRNA_A-nodosum_M_contig10720.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=147bp|location=Sequence derived from alignment at A-nodosum_M_contig10720:2257..2599+ (Ascophyllum nodosum dioecious)
ATGTACGCTATGGTGCTCCTGCAACCATGTCTTATCGTGATCGATCATGG
TCACTTTCAATACAACTCGGTGTGCCTGGGTCTGGCTGTGGCGGGTGCGG
CGGCGGTGAGCGGGGGACGATTTCAAGGCGGTGAGACAGACCGATAA
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