mRNA_A-nodosum_M_contig1072.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1072.6.1
Unique NamemRNA_A-nodosum_M_contig1072.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1072.6.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 8.260e-19
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 SGDMFSEIMATASEGQTTFPAMPPRRVKHVITELYVATKKAVVGDLNEEVEKATLPIVHYMLDGWTCK 204
            SG  F E+MATA+ G +++P +PPRRVKH+ITELYVATKK VVG++ +EVE+A LPI+H+ +D WT K
Sbjct:  201 SGGTFKEMMATAT-GTSSYPTLPPRRVKHLITELYVATKKVVVGNMVQEVERAPLPILHHNIDIWTDK 267
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BLAST of mRNA_A-nodosum_M_contig1072.6.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.760e-18
Identity = 34/68 (50.00%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 SGDMFSEIMATASEGQTTFPAMPPRRVKHVITELYVATKKAVVGDLNEEVEKATLPIVHYMLDGWTCK 204
            SG+ + ++M   +   T +PA+P RR++H++ E++VATKKAV+G++ EE++KA LPIVHY +D WTCK
Sbjct:   13 SGNSWKDVMGLETADDTPYPALPSRRIEHLLVEMFVATKKAVMGNMLEEIKKAPLPIVHYGVDLWTCK 80
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BLAST of mRNA_A-nodosum_M_contig1072.6.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.040e-17
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 SGDMFSEIMATASEGQTTFPAMPPRRVKHVITELYVATKKAVVGDLNEEVEKATLPIVHYMLDGWTCK 204
            SG+MF E+MAT   G T++P +PP+RVKH++ ELY +TKKAV+GD+  EV  A LPI+H+M+D WT K
Sbjct:  127 SGEMFREMMATHG-GNTSYPELPPKRVKHLLVELYCSTKKAVLGDMLVEVRSAPLPILHHMIDIWTDK 193
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BLAST of mRNA_A-nodosum_M_contig1072.6.1 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-15
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 SGDMFSEIMATASEGQTTFPAMPPRRVKHVITELYVATKKAVVGDLNEEVEKATLPIVHYMLDGWTCK 204
            SGD    ++A    G + FP + PRRVKH++TELYVATKK VVG++ EEV KA LP++H+M+D WT K
Sbjct:   56 SGDELRTLLALI--GDSDFPPLRPRRVKHLLTELYVATKKVVVGNMLEEVRKAPLPVLHHMIDIWTEK 121
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BLAST of mRNA_A-nodosum_M_contig1072.6.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.540e-14
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   10 MFSEIMATASEGQTTFPAMPPRRVKHVITELYVATKKAVVGDLNEEVEKATLPIVHYMLDGWTCK 204
            MF E+MATA+ G T +P +P  RVK ++ E+Y+ATKKAV+ ++ EEV+ A LPI+H+M+D WT K
Sbjct:    1 MFKEMMATAA-GNTPYPELPAERVKDLLVEMYIATKKAVMSNMLEEVKNAPLPILHHMIDIWTDK 64
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BLAST of mRNA_A-nodosum_M_contig1072.6.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.520e-9
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   82 KHVITELYVATKKAVVGDLNEEVEKATLPIVHYMLDGWTCK 204
            KH++ E+YVATKKAVVG++  E+E+A LPIVHY +D W CK
Sbjct:  210 KHLLVEMYVATKKAVVGNMLTEIERAPLPIVHYGIDLWQCK 250
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1072.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE8.260e-1961.76Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE6.760e-1850.00Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KS21_9PHAE2.040e-1757.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZ81_9PHAE1.700e-1555.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L8D8_9PHAE1.540e-1453.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE2.520e-963.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1072contigA-nodosum_M_contig1072:186815..187315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866460.0873125-CDS-A-nodosum_M_contig1072:186814..1868981680866460.0873125-CDS-A-nodosum_M_contig1072:186814..186898Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1072 186815..186898 -
1680866460.144963-CDS-A-nodosum_M_contig1072:187195..1873061680866460.144963-CDS-A-nodosum_M_contig1072:187195..187306Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1072 187196..187306 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866460.1537077-UTR-A-nodosum_M_contig1072:187306..1873151680866460.1537077-UTR-A-nodosum_M_contig1072:187306..187315Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1072 187307..187315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1072.6.1prot_A-nodosum_M_contig1072.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1072 186815..187306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1072.6.1

>prot_A-nodosum_M_contig1072.6.1 ID=prot_A-nodosum_M_contig1072.6.1|Name=mRNA_A-nodosum_M_contig1072.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
MFSEIMATASEGQTTFPAMPPRRVKHVITELYVATKKAVVGDLNEEVEKA
TLPIVHYMLDGWTCK
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mRNA from alignment at A-nodosum_M_contig1072:186815..187315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1072.6.1 ID=mRNA_A-nodosum_M_contig1072.6.1|Name=mRNA_A-nodosum_M_contig1072.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at A-nodosum_M_contig1072:186815..187315- (Ascophyllum nodosum dioecious)
AGTGGGGACATGTTCTCGGAAATCATGGCCACCGCCAGCGAAGGCCAAAC
CACGTTCCCGGCGATGCCTCCGCGGCGCGTGAAGCACGTCATCACCGAGC
TCTACGTTGCGACCAAGAAGGTAGCAAACAAACAACAAAGCTATGATCCA
TGATAATAATTATTTTTTCAATTGAACTATTTCGAAATGTAAAGTATAAA
ACAAGATGTGTGTGTTTTAAATTTATTGTTGTTTGGGTTTTTTGGTGATT
GTTTTTCGCAACACATAAGACATATGAAGAGGAGATGAGGATATTGTGTA
AATACAACACACGCGCATGTGTGCCATTTCGCGTCACTTCTCGATTCTTG
TTCTTTGAAGCACCGGGAATATTAAGTACCGGCCGATGCGTTGCACTCCC
CCCCCCCTCCTCTGCAGGCAGTCGTCGGAGACCTCAACGAGGAGGTCGAG
AAAGCTACGCTCCCGATCGTGCACTACATGCTCGACGGGTGGACCTGCAA
G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1072:186815..187315-

>mRNA_A-nodosum_M_contig1072.6.1 ID=mRNA_A-nodosum_M_contig1072.6.1|Name=mRNA_A-nodosum_M_contig1072.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig1072:186815..187315- (Ascophyllum nodosum dioecious)
ATGTTCTCGGAAATCATGGCCACCGCCAGCGAAGGCCAAACCACGTTCCC
GGCGATGCCTCCGCGGCGCGTGAAGCACGTCATCACCGAGCTCTACGTTG
CGACCAAGAAGGCAGTCGTCGGAGACCTCAACGAGGAGGTCGAGAAAGCT
ACGCTCCCGATCGTGCACTACATGCTCGACGGGTGGACCTGCAAG
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