mRNA_A-nodosum_M_contig1070.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1070.5.1
Unique NamemRNA_A-nodosum_M_contig1070.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1070.5.1 vs. uniprot
Match: A0A6H5K4J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.230e-11
Identity = 40/83 (48.19%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:    4 VSGLILAVFLPLQVGAASLRPKKLSGNTRVLIPDG-TAPPKESKIRLAWQYSHIGLGYIAAVWGLVQCLGGLYFLDSIISDNW 249
            ++GLIL VF+ LQV AA LRP K      V    G T P   SK+R AW   H GLGYIA V  + QC GGL  +D+   D W
Sbjct:  355 MNGLILTVFIGLQVVAAVLRPSKPRAGAMVQDATGQTNPQPVSKVRRAWALLHRGLGYIAVVMAVFQCFGGLRLVDA--EDAW 435
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BLAST of mRNA_A-nodosum_M_contig1070.5.1 vs. uniprot
Match: A0A6H5JKV6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.260e-11
Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:    1 GVSGLILAVFLPLQVGAASLRPKKLSGNTRVLIPDGTAPPKE-SKIRLAWQYSHIGLGYIAAVWGLVQCLGGLYFLDSIISDNW 249
            G +GL+L +F+ LQV AA  RP K      +   +G A P   SK+R AW   H GLGYI   W + QCLGG+  L+  + D W
Sbjct:  443 GKAGLVLTIFVMLQVLAAVFRPSKPPAGAVIQDANGQAKPAPVSKVRQAWTLLHRGLGYITVTWAVFQCLGGIDLLE--VDDVW 524
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BLAST of mRNA_A-nodosum_M_contig1070.5.1 vs. uniprot
Match: A0A6H5JWF4_9PHAE (Cytochrome b561 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.750e-9
Identity = 35/74 (47.30%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    4 VSGLILAVFLPLQVGAASLRPKKLSGNTRVLIPDGTAPPKE---SKIRLAWQYSHIGLGYIAAVWGLVQCLGGL 216
            ++GLIL VF+ LQV AA LRP K       ++ D T   K+   SK+R AW   H  LGYIA V  + QC GGL
Sbjct:  183 INGLILTVFIGLQVVAAVLRPSKPPAGA--MVQDATGQTKQQPVSKVRRAWALLHRVLGYIAVVMAVFQCFGGL 254
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1070.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K4J1_9PHAE2.230e-1148.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKV6_9PHAE2.260e-1142.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JWF4_9PHAE9.750e-947.30Cytochrome b561 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1070contigA-nodosum_M_contig1070:118200..119335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2R8
PFAMsCDH-cyt,Cytochrom_B561,Cytochrom_C_asm,DM13,DOMON
Model size253
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00035
KEGG koko:K00547
KEGG ReactionR00650
KEGG Pathwayko00270,ko01100,ko01110,map00270,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0012505,GO:0031410,GO:0031982,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Exons3
Evalue5.65e-13
EggNOG OGsKOG4293@1|root,KOG4293@2759|Eukaryota
EC2.1.1.10
DescriptionDOMON domain-containing protein
Cds size249
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866456.655106-CDS-A-nodosum_M_contig1070:118199..1183131680866456.655106-CDS-A-nodosum_M_contig1070:118199..118313Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 118200..118313 +
1680866456.6686735-CDS-A-nodosum_M_contig1070:118744..1188311680866456.6686735-CDS-A-nodosum_M_contig1070:118744..118831Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 118745..118831 +
1680866456.676781-CDS-A-nodosum_M_contig1070:119285..1193331680866456.676781-CDS-A-nodosum_M_contig1070:119285..119333Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 119286..119333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1070.5.1prot_A-nodosum_M_contig1070.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1070 118200..119333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1070.5.1

>prot_A-nodosum_M_contig1070.5.1 ID=prot_A-nodosum_M_contig1070.5.1|Name=mRNA_A-nodosum_M_contig1070.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
GVSGLILAVFLPLQVGAASLRPKKLSGNTRVLIPDGTAPPKESKIRLAWQ
YSHIGLGYIAAVWGLVQCLGGLYFLDSIISDNW
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mRNA from alignment at A-nodosum_M_contig1070:118200..119335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1070.5.1 ID=mRNA_A-nodosum_M_contig1070.5.1|Name=mRNA_A-nodosum_M_contig1070.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1136bp|location=Sequence derived from alignment at A-nodosum_M_contig1070:118200..119335+ (Ascophyllum nodosum dioecious)
GGCGTGTCGGGTCTGATCCTGGCGGTGTTCCTACCCCTTCAAGTTGGAGC
GGCGTCCTTGCGGCCTAAGAAGCTGTCCGGGAATACCAGAGTGCTGATAC
CTGACGGAACAGCGGTAAGGCACATAATACACACACGTGCTCACATCTAC
TAAATACTGGTACACTCCTATAGAGATAGGAAAATCACGGACCGAGCTAC
CATGTGCCTGTTTCAATGTTTTTCTTCGCGAGAAAAATATTCTTTGACAG
TTGATTAGTTGATTGGGGTTTGGGGGGCCCCACCACCCACCTTTTTTTTT
TTGTCGCAAGACTCTGAAAGGCAAAAAACATTTTGGGTATGTATCTTTTC
ATGACCCTCTTTACGAAAGTGTACGATTAAAAGTACGTAGAACAATTTTT
TTGTCACACGCCCCTCAGGTGGACGTACCTCAAACCTACGAAGTGAAGTG
GCGTTACCTTTTTCTCTTTTTGTTGTCCGATTTTTTTTAAATTTTTTTTT
TTCCCTCTGTCTTTTGGACGACGGGGGCGTTGTTTCCCCTCGAAGCCTCC
AAAGGAAAGCAAGATTCGCCTGGCGTGGCAGTACTCTCATATCGGCTTGG
GCTACATCGCGGCGGTATGGGGTCTTGTGCAGGTGCGATGGCGTCGTTTT
TTATTTAGTAACTCTGATGTCTTGAAAAAATCTACACTTCTTCAGAGTTA
CTACGGTTGTACATACTCGTCCATCCCACGGGATGCGTTAAAAAAAACAA
AAAAAAACAAGACTTCCTACTTATTCTTAATAGCAGTTATTGATAATAAC
AAGACGCAGCTGTTGTTTTACGGGTGGTGTAGACTGTGGTACTCTAGTGC
TATATTTAGTTTTAGTCGTACTTGTTGGTCATGAAATATAAAAAATCGGT
ATATTCCGCTTATTTATTATTTTAAGCGGTCGTGGAGGTGGTGATGTTAC
ACACGTGCACAGGCTGCGTCCTCCTCCGCCGATAATGATTCCACGCCGCC
CCGCCGTCTGTTCCGCGCTGTTGCTGTTGCGCGTATAAACATTGAAATCT
CGACCCCGGGAAACAAACAAAATAAATCAACTCCAGTGCCTGGGAGGACT
CTATTTTCTGGACAGCATCATCAGCGACAACTGGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1070:118200..119335+

>mRNA_A-nodosum_M_contig1070.5.1 ID=mRNA_A-nodosum_M_contig1070.5.1|Name=mRNA_A-nodosum_M_contig1070.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig1070:118200..119335+ (Ascophyllum nodosum dioecious)
GGCGTGTCGGGTCTGATCCTGGCGGTGTTCCTACCCCTTCAAGTTGGAGC
GGCGTCCTTGCGGCCTAAGAAGCTGTCCGGGAATACCAGAGTGCTGATAC
CTGACGGAACAGCGCCTCCAAAGGAAAGCAAGATTCGCCTGGCGTGGCAG
TACTCTCATATCGGCTTGGGCTACATCGCGGCGGTATGGGGTCTTGTGCA
GTGCCTGGGAGGACTCTATTTTCTGGACAGCATCATCAGCGACAACTGG
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