mRNA_A-nodosum_M_contig1070.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1070.20.1
Unique NamemRNA_A-nodosum_M_contig1070.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: A0A6H5L2D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D8_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 6.090e-99
Identity = 165/253 (65.22%), Postives = 204/253 (80.63%), Query Frame = 1
Query:  382 KVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRMDGEQVAIVEAKNVPETASLETLVNQDEPRFVLLRREDIKFLVYSCPEASTLRERMISSSSKASVAAAASEEGTTVDHMIEIKAADEIDSVLADAIRARAGLDDSGEARPANGERAMMTSGVPAVARPNRPGRGRARLTKRS 1140
            +VR+KM+YS+SKQD+RQGLGLGFFEGEYYANV SDL F+SLVASRR+ +GDQLLSEAELLKR+LNKQERASDAGMKSAAMGV+PF +  ++R +L+ FG G   V+W+EMRMDGE++A+V AK + E A LE L++++EPRF+LLRR+  KFLVYSCPE S +R +M  SSSKASV AAA+E G TVDHM+EI+AA+EID  +A A+R       +G      GE   ++  VPAVARP+RPGRGRARLTKRS
Sbjct:    5 RVREKMIYSTSKQDVRQGLGLGFFEGEYYANVPSDLTFESLVASRRAGSGDQLLSEAELLKRDLNKQERASDAGMKSAAMGVIPFKVKGDLRAQLQTFGSGGGDVDWIEMRMDGEEIALVGAKTIAEVADLEELIDEEEPRFILLRRDHSKFLVYSCPEESAVRLKMTYSSSKASVVAAAAEAGVTVDHMVEIRAANEIDEAVAHAVRGSK-EHAAGREGGVGGEGTTISPPVPAVARPSRPGRGRARLTKRS 256          
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: A0A835YV51_9STRA (ADF-H domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV51_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.380e-63
Identity = 143/354 (40.40%), Postives = 204/354 (57.63%), Query Frame = 1
Query:   82 ARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDEDTLTIVGSRQRG-DLQTDFDSLAEEAVEATPSIFLVSLDPEELKMVTGKAAGAARQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRMDGE-QVAIVEAKNVPETASLETLVNQDEPRFVLLRREDIKFLVYSCPEASTLRERMISSSSKASVAAAASEEGTTVDHMIEIKAADEIDSVLADAIRARAGLDDSGEARPANGERAMMTSGVPAVARPNRPGRGRARLTKR 1137
            ARAFL L E L+  F  AQ+D T+R+LR  + +E  + +V        +Q DFD L +     +P+I L     E         AG+ + WLL+AW+PD SK R KMLYSSSK D+++GLGLG+F GEYYA+  S+L++ +L+ASR +     LL+E E++++E+ +Q R  D   KS AMGV+PF   DE+R +L AF  G   VNWV M +  +  + + EA+ V   +SL   V+  EPRF LL+  D  F VYSCPE + +R +M  S+++ASV AA +  GT      E    +EI+  LA  ++        G A  AN       +  P  ++P+RPGRGR RLT +
Sbjct:    2 ARAFLSLDEGLKTAFIAAQEDSTVRWLRAGVQEEKAIVLVSQGSASPSVQQDFDGLQDALDSDSPAILLFREAAE--------GAGSGK-WLLIAWVPDVSKTRLKMLYSSSKADVKEGLGLGYFGGEYYASEPSELSYAALLASRDTTHDGDLLTEREVIQKEMARQAR--DITAKSTAMGVIPFEATDELRRQLEAFKAGA--VNWVGMAVTADGAIGLGEARTVDVKSSLAPHVDAAEPRFYLLQHGDTAFFVYSCPEGAPVRLKMTYSTARASVVAAVAAAGTDCSKSFECGGPEEIEEALAYELK--------GVADGANAGALSAAADAPLPSKPSRPGRGRGRLTAK 334          
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: A0A7S3HH81_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH81_9STRA)

HSP 1 Score: 183 bits (465), Expect = 6.020e-49
Identity = 117/319 (36.68%), Postives = 180/319 (56.43%), Query Frame = 1
Query:   70 KTMAARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDEDTLTIVGSRQRGDLQTDFDSLAEEAVEATPSIFLV---SLDPEELKMVTGKAAGAARQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRMDGEQVAIVEAKNVPETASLETLVNQDEPRFVLLRRE------DIKFLVYSCPEASTLRERMISSSSKASVAAAASEEGTTVDHMIEIKAADEIDSVLADA 999
            K   ARA L +   + E F +AQD   +R L+V+I DED +      + G    DF+++  +++    ++F++   S D +E           +  W +VAW+PD  +VRDKMLYSSS++D+++ LGLGFF+ EY AN +SDL +     S        +L+E+E L  E  +Q +A  A  KS+A+ V+PF +  EV  +L AF EG    NWVEM +  E +++V  ++V    SL++ ++ +   F+ L+        DI   ++SCPE S +R +M  SSSKASV AAA + G T D  +EI+ ADE+D  +  A
Sbjct:    1 KLTMARANLNIQTQINEEFLRAQDSGDVRLLKVKIQDEDLILDGIVNKVGTPSDDFNTVLLDSIADDQALFVLFRASDDSQE-----------SSPWCMVAWVPDGCRVRDKMLYSSSREDLKRSLGLGFFKSEYAANQRSDLTWSQYQHSLDRNFDADVLTESERLVLEEKQQVQAESAVSKSSALSVLPFAMTSEVTEQLNAFKEGT--CNWVEMTITNEIISLVGFRSVTADDSLQSFIDTENASFIALKLPKGEESGDISLFIFSCPENSPVRVKMTMSSSKASVLAAAQQLGITFDKTLEIRDADEVDEAVRSA 306          
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: A0A7S2HAE2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HAE2_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.030e-43
Identity = 122/369 (33.06%), Postives = 197/369 (53.39%), Query Frame = 1
Query:   76 MAARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDEDTLTIVGSRQRGDLQTDFDSLAEEAVEATPSI--FLVSLDPEELKMVTGKAAGAARQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGD-QLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRMDG-EQVAIVEAKNVPETASL---ETLVNQDEPRFVLLRREDIK--------FLVYSCPEASTLRERMISSSSKASVAAAASEEGTTVDHMIEIKAADEIDSVLADAIRARAGLDDSGEARPANGERAMMTSGVPAVARPNRPGRGRARLTKR 1137
            MAARA L ++E L   F  AQ+  ++R++   I  E  +       +GD+  DF  LA      +P+   F VS   EE           AR+W  ++W+P++SKVR KML+SSS+ D+++ LG G+F  EY+A    D+ +D+   S R ++G+ Q LSE E L +E    E+  D   +S+AM  + F I D+VR +++ F  G   V  +E+ +   E V +  A ++  +A L     LV+  EPRF+L++  +          F VYSCPE + LR +M  SS+K+++ A  +EEG  +D  +E+    +I++ ++    A++  DDSG   P             + ++P RPG+GRARL+ +
Sbjct:   10 MAARANLTVAEGLLAAFIDAQNTPSIRWIEAGIDQESIVQTGNGDAQGDVAEDFARLASSLNHESPAFIAFCVSEGVEE--------GNCARRWTFISWVPENSKVRSKMLFSSSRDDLKKALGAGYFSNEYFATDAHDMAWDTYTKSTRDLSGEEQPLSEVERLVKEEALLEK--DTSTRSSAMAAIAFPIEDDVRAQIKEFLTG--NVTVIELTLTTTETVGLGSAHSIEPSAVLGQISELVSNTEPRFLLVKHPNSSSDVAPTSTFFVYSCPEEAALRMKMTYSSAKSTIIAETAEEGIKIDKALEVNDTKDIEAAISSEATAQS-ADDSGGNAP--------LKHAASESKPRRPGKGRARLSTK 357          
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: A0A7R9YEV0_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEV0_9STRA)

HSP 1 Score: 162 bits (409), Expect = 4.220e-41
Identity = 116/350 (33.14%), Postives = 182/350 (52.00%), Query Frame = 1
Query:   82 ARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDEDTLTIVGSRQRGD-LQTDFDSLAEEAVEATPSIFLVSLDPEELKMVTGKAAGAARQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRMDGEQVAIVEAKNVPETASLETLVNQDEPRFVLLR-------REDIKFLVYSCPEASTLRERMISSSSKASVAAAASEEGTTVDHMIEIKAADEIDSVLADAIRARAGLDDSGEARPANGERAMMTSGVPAVARPNRP 1107
            ARA L + E+L+  FA AQ  + +R   V I  E TLT+ GS   G  +  DF+SLA  A++   + F++    E+++         AR+WLLVAW+PD + VR KML+SSS+ DI+  LG   F G+YYAN   DL F    +S+ S   +  L+EAE+L++E    +  S    K++AMGV+PF   D+  + +  F +G   V+WVE+ +  E+  +    +  ++      VN +EPRF+ +R            F + S PE S ++ +M+ ++++ +V A  S    + D  IE+   +++DS +   I     L  S  A       A +TS  PA  R  RP
Sbjct:    2 ARANLIIDEELKAAFAAAQHGDFVRHFLVTIQGE-TLTLTGSTPPGSSVAEDFESLAS-ALDPDSAAFVIFCLAEDVR-------DGAREWLLVAWVPDTAPVRQKMLFSSSRDDIKSALGRALFAGDYYANSADDLKFSQYQSSQPSAAAEAPLTEAEILRKEAATADMQSSHVTKASAMGVVPFNFTDDTLSSMDDFRDG--RVSWVEIELIAEEEKVSLVSSGDKSEPYNGHVNAEEPRFIFIRVPRGANGNSSTTFFLLSVPEGSPVKLKMLMATARNTVLAECSARSLSFDKTIEVGDVNDVDSTIEWEINPPKDLGVSSAA-------AAITSAKPAAPRGRRP 333          
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: A0A8K1FEY0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEY0_PYTOL)

HSP 1 Score: 145 bits (367), Expect = 2.910e-35
Identity = 122/364 (33.52%), Postives = 189/364 (51.92%), Query Frame = 1
Query:   82 ARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDED-TLTIVGSRQRGDLQTDFDSLAEEAVEATPSIF-LVSLDPEELKMVTGKAAGAARQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRM--DGEQVAIVEAKNVPETASLETLVNQDEPRFVLLR--------REDIKFLVYSCPEASTLRERMISSSSKASVAAAASEEGTTVDHMIEIKAADEIDSVLADAIRARAGLDDSGEARPANGERAMMTSGVPAVARPNRPGRGRARLTKR 1137
            A+A L ++E L   FA AQ  + +RF++V IVDED TL  VG     D++ D D+L    + A  + F L  LD              A +W+L+A++P+ + VRDKMLYSSS++ +++ LG+ +F GE++A   SD+  +    +++  T D  LSE E L +E    ER  D  ++S AMGV+PF I   VR+KL    +G    +W+ M++  + E V +V++    +   ++++++Q  P FV  R           + FL Y CPE + +R +M+ S++KA++ A  +E G T D  IEI           + IRA        E  P   E  +        ARP  PGRGR R  +R
Sbjct:    2 AKAVLNVNEALARAFASAQSGK-VRFVKVVIVDEDLTLAGVGDAS-SDVRGDCDALRSTHLTAEDAAFVLFCLDVHV----------PALRWVLLAFVPESASVRDKMLYSSSRESLKKQLGMNYFVGEFHATELSDVTLEGFQHAKQRQTVDAPLSETERLLKETALLER--DTNIRSTAMGVIPFGISQNVRDKLTLLKDGK--FDWIAMKLNTEDESVEVVKSVESVDLIDVQSVIDQKNPSFVAYRPPPTASASSPSLLFL-YVCPEDAPVRLKMVYSTAKATILATTTELGLTFDKTIEINNP----LTATEDIRA--------ELAPVKVEEDVKAR---EFARPVAPGRGRGRGPRR 333          
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: A0A421GHW1_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GHW1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.470e-35
Identity = 106/305 (34.75%), Postives = 169/305 (55.41%), Query Frame = 1
Query:   82 ARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDED-TLTIVGSRQRGDLQTDFDSLAEEAVEATPSIFLVSLDPEELKMVTGKAAGAARQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRM--DGEQVAIVEAKNVPETASLETLVNQDEPRFVLLRRE--------DIKFLVYSCPEASTLRERMISSSSKASVAAAASEE-GTTVDHMIEI 960
            ARA L LS +L   FA AQ  + LRF++V I DE   L+ VGS    + + D   L   ++ A  + F++      +         AA +W+L+A++P+   VRD+MLYSSS+  +++ LGL +F GE++A   +++ ++S + +R+    D  LSE+E L +E    ER  D  +KS+AMGV+PF I   VR+KL+   E  +  +W+ M++  D E V +V++    +   + + +++  P FV  R               +Y CPE S +R +M+ S+ KA+V + ASEE G T DH IEI
Sbjct:    2 ARANLLLSAELERAFADAQSGK-LRFVKVSISDESFVLSSVGSAT-SEPRADCQQLVSSSLIADQAAFVLLCPDTNV---------AALRWVLLAFVPESVSVRDRMLYSSSRDSLKKQLGLNYFSGEFHATELNEVTWESFLEARKKQKADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFEITKNVRDKLKLLVE--NKFDWIAMKLSEDNESVEVVKSLESVDLLDVPSTLDRRSPSFVAYRYRGPVASGATSALIFMYVCPEDSPVRLKMVYSTCKATVLSVASEELGITFDHTIEI 291          
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: A0A225WA37_9STRA (Twinfilin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA37_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.290e-34
Identity = 101/290 (34.83%), Postives = 163/290 (56.21%), Query Frame = 1
Query:   82 ARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDED-TLTIVGSRQRGDLQTDFDSLAEEAVEATPSIFLVSLDPEELKMVTGKAAGAARQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRM--DGEQVAIVEAKNVPETASLETLVNQDEPRFVLLRRE----DIKFLVYSCPEASTLRERMISSSSKASVAAAASEE 930
            ARA L LS DL   FA AQ  + LR+++V I DE   L+ VG+    + + D + L    ++A  + F++      +         AA +W+L+A++P+   VRD+MLYSSS+  +++ LGL +F GE++A   S++ ++S + +R+    D  LSE+E L +E  K ER  D  +KS+AMGV+PF I   VR+KLR   +  +  +W+ M++  D E V +V++    E   +   +++  P FV  R           +Y CPE S +R +M+ S+ KA+V A A+EE
Sbjct:    2 ARANLLLSADLERAFADAQSGK-LRYVKVSIDDESFVLSAVGAA--AEPRADVEQLVTTHLDAQQASFVLLCVDTNV---------AALRWVLLAFVPESVSVRDRMLYSSSRDSLKKQLGLNYFAGEFHATELSEVTWESFLEARKKQAADAPLSESERLLKEAAKLER--DTNVKSSAMGVVPFEITQNVRDKLRLLQD--NKFDWIAMKLSEDNESVEVVKSLESVELIDVPATLDRRSPSFVAYRYRAPGATSLIFMYVCPEDSPVRLKMVYSTCKATVLAVANEE 275          
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: K3WLI0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLI0_GLOUD)

HSP 1 Score: 142 bits (358), Expect = 5.190e-34
Identity = 109/329 (33.13%), Postives = 172/329 (52.28%), Query Frame = 1
Query:   82 ARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDEDTLTIVGSRQRGDLQTDFDSLAEEAVEATPSIF-LVSLDPEELKMVTGKAAGAARQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRM--DGEQVAIVEAKNVPETASLETLVNQDEPRFV-------LLRREDIKFLVYSCPEASTLRERMISSSSKASVAAAASEEGTTVDHMIEIK----AADEIDSVLA-----DAIRAR 1011
            A+A L +S +L   FA AQ  + +RF++V I  E  +         D++ D  +L  E +    + F L  LD              A +W+L+A++P+   VRDKMLYSSS++ +++ LG+ +F GE++A   SD+ F+S   +++    D  LSE E L +E    ER  D  +KS AMGV+PF I   VR KL  F +G    +W+ M++  D E V +V++    +   ++ +++   P FV       L+  +     +Y CPE S +R++M+ S+ KA+V AA S  G   D  IEI     A D+I + LA     D ++AR
Sbjct:    2 AKAQLLMSAELERAFADAQGGK-VRFVKVAIDGEAFVVSAVGAASSDVRRDAQTLVAEYLPGDQAAFVLFCLDVNV----------PALRWILLAFVPEGVNVRDKMLYSSSRESLKKQLGMNYFVGEFHATETSDVTFESFQNAKKKHAADAPLSETERLLKETALLER--DTNVKSTAMGVIPFEITQNVREKLALFKDGK--FDWIAMKLNTDDESVEVVKSLETVDLIDVQGVIDHKAPSFVAYRYRGSLVAAQSTLIFLYVCPEESPVRQKMVYSTCKATVLAATSGLGIEFDKTIEINTPSHATDDIRADLAPPKTEDEVKAR 315          
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Match: A0A3M6VJX2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJX2_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.540e-34
Identity = 104/320 (32.50%), Postives = 171/320 (53.44%), Query Frame = 1
Query:   82 ARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDEDTLTIVGSRQRGDLQTDFDSLAEEAVEATPSIFLVSLDPEELKMVTGKAAGAARQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSVTGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAFGEGVDGVNWVEMRMD--GEQVAIVEAKNVPETASLETLVNQDEPRFVLLRRE--------DIKFLVYSCPEASTLRERMISSSSKASVAAAASEE--GTTVDHMIEIK----AADEIDSVLA 993
            ARA L LS +L   FA AQ+ + LR++++ I +E  +         +   D   L   ++ A  + F++      +         +A +W+L+A++P+   VRD+MLYSSS+  +++ LGL +F GE++A    ++ ++S + +R+    D  LSE+E L +E    ER  D  +KS+AMGV+PF I   VR+KLR   E  +  +W+ M++    E V +V++    E + + +++++  P FV  R               +Y CPE S +R +M+ S+ KA+V + A EE    T DH IEI     AAD+I S LA
Sbjct:    2 ARANLLLSAELERAFAAAQNGK-LRYVKISIDNESFVVSASGPATSEPHDDVAQLVTSSLNAEEAAFVLLCPDTNV---------SALRWVLLAFVPESVSVRDRMLYSSSRDSLKKQLGLNYFSGEFHATELREVTWESFLEARKKQAADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFQITQNVRDKLRLLKE--NKFDWISMKLSESNESVEVVKSLENLELSDVSSILDRHTPSFVAYRYRGPLASNATSALVFMYVCPEDSPVRLKMVYSTCKATVLSVAKEEPLNITFDHTIEINTPTSAADDIRSELA 307          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1070.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2D8_9PHAE6.090e-9965.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV51_9STRA1.380e-6340.40ADF-H domain-containing protein n=3 Tax=Tribonema ... [more]
A0A7S3HH81_9STRA6.020e-4936.68Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S2HAE2_9STRA3.030e-4333.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9YEV0_9STRA4.220e-4133.14Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A8K1FEY0_PYTOL2.910e-3533.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A421GHW1_9STRA4.470e-3534.75Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]
A0A225WA37_9STRA2.290e-3434.83Twinfilin n=1 Tax=Phytophthora megakarya TaxID=479... [more]
K3WLI0_GLOUD5.190e-3433.13Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3M6VJX2_9STRA5.540e-3432.50Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1070contigA-nodosum_M_contig1070:168291..173691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000013977
PFAMsCofilin_ADF
Model size1821
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons8
Evalue5.42e-37
EggNOG OGsKOG1747@1|root,KOG1747@2759|Eukaryota,1MBSU@121069|Pythiales
DescriptionTwinfilin. Source PGD
Cds size1068
COG categoryW
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1070.20.1prot_A-nodosum_M_contig1070.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1070 168366..173013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866457.1529977-UTR-A-nodosum_M_contig1070:168290..1683651680866457.1529977-UTR-A-nodosum_M_contig1070:168290..168365Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1070 168291..168365 +
1680866457.2469828-UTR-A-nodosum_M_contig1070:173013..1736911680866457.2469828-UTR-A-nodosum_M_contig1070:173013..173691Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1070 173014..173691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866457.1654623-CDS-A-nodosum_M_contig1070:168365..1685421680866457.1654623-CDS-A-nodosum_M_contig1070:168365..168542Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 168366..168542 +
1680866457.176826-CDS-A-nodosum_M_contig1070:169381..1695131680866457.176826-CDS-A-nodosum_M_contig1070:169381..169513Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 169382..169513 +
1680866457.1869593-CDS-A-nodosum_M_contig1070:170688..1708581680866457.1869593-CDS-A-nodosum_M_contig1070:170688..170858Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 170689..170858 +
1680866457.1990664-CDS-A-nodosum_M_contig1070:171241..1713981680866457.1990664-CDS-A-nodosum_M_contig1070:171241..171398Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 171242..171398 +
1680866457.2123318-CDS-A-nodosum_M_contig1070:171555..1716361680866457.2123318-CDS-A-nodosum_M_contig1070:171555..171636Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 171556..171636 +
1680866457.2203271-CDS-A-nodosum_M_contig1070:172065..1721081680866457.2203271-CDS-A-nodosum_M_contig1070:172065..172108Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 172066..172108 +
1680866457.2288458-CDS-A-nodosum_M_contig1070:172509..1726251680866457.2288458-CDS-A-nodosum_M_contig1070:172509..172625Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 172510..172625 +
1680866457.2374618-CDS-A-nodosum_M_contig1070:172821..1730131680866457.2374618-CDS-A-nodosum_M_contig1070:172821..173013Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1070 172822..173013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1070.20.1

>prot_A-nodosum_M_contig1070.20.1 ID=prot_A-nodosum_M_contig1070.20.1|Name=mRNA_A-nodosum_M_contig1070.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=356bp
MAARAFLRLSEDLREGFAKAQDDETLRFLRVEIVDEDTLTIVGSRQRGDL
QTDFDSLAEEAVEATPSIFLVSLDPEELKMVTGKAAGAARQWLLVAWIPD
DSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKSDLNFDSLVASRRSV
TGDQLLSEAELLKRELNKQERASDAGMKSAAMGVMPFTIHDEVRNKLRAF
GEGVDGVNWVEMRMDGEQVAIVEAKNVPETASLETLVNQDEPRFVLLRRE
DIKFLVYSCPEASTLRERMISSSSKASVAAAASEEGTTVDHMIEIKAADE
IDSVLADAIRARAGLDDSGEARPANGERAMMTSGVPAVARPNRPGRGRAR
LTKRS*
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mRNA from alignment at A-nodosum_M_contig1070:168291..173691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1070.20.1 ID=mRNA_A-nodosum_M_contig1070.20.1|Name=mRNA_A-nodosum_M_contig1070.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5401bp|location=Sequence derived from alignment at A-nodosum_M_contig1070:168291..173691+ (Ascophyllum nodosum dioecious)
GGTCAACCCATCGTATGTACTTGTAGCAGTTGCTGTCCGTGAAGAAAATA GACTGCAGCAGTGTGCGAGAAGACCATGGCAGCTCGAGCATTCCTCCGTT TATCTGAGGATCTCCGCGAGGGATTTGCCAAAGCCCAAGATGATGAGACA CTGCGTTTCCTGCGCGTTGAAATTGTCGATGAGGATACATTGACTATAGT CGGGTCGCGGCAACGCGGAGACCTGCAGACGGACTTCGACTCACTAGCTG AGGCAAGCATGTAGAAGGTTACCCATGGAGTACTTGATTCCTCTGAGAAC GATTGCATTCGGTATAATTTGCAGCGATAGTTGTATTGTTGTATTCATCG TGTACAACAGTCGCGCGCTTCCTCGGAGCTGAATCGCCCGCAAGTGTAAG TCGTCTCTGATTCATGATTTTCTACGGAGTACTGAGCGATGTTCCACCAT ATCTCGTGTTGCCTCGTTCCAAAACAGATTGTTCTTGCTCTTGCCCTTTT CATGCCCATCGCCACGAGTTCTTGTTCAGTACAACAGACACCACCGCTGT ACCTTTTCACCCTTAAACTCACAAGTATGAAGTGTATACGTGGGCGATCT GTTGCCGGCTTCGTTGACACGTTAGCTCGCAATCCTGTTCGTGCTGTCTG CTTCCTCTTCAGCAGTCATCCATCACAAAGTGCGGCGTGTAGCATCTGAA GAGATGTATGTATGTATGTATGTATGTATGGTCACCACATATAGCAGAGT ATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAG GGAAAATGATATTCCCCTGTCCCCGTGCGTGTCTGAGAATTTGGTCTCGC GAGACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCAAGAG TACCGTACAGTAGATTCTATAGCGGTACGAGAACGTTTCCTCGAACGACG CAGCTACCGCGCGTTAGCCTGGAATGTGGTTGTAACGTTACGCTTGAATC TTTTACGCCAAAGCCCCAACACGGGTAAGTATGAGTAACGGCACTGCCAA GCTGTCGGCGGCCTGCGTTTCCGGACGTGTATCGTTCCCAGGAAGCGGTC GAGGCAACCCCGTCTATCTTCCTGGTGTCGCTGGACCCCGAGGAACTCAA GATGGTAACGGGAAAGGCGGCAGGCGCGGCGCGTCAGTGGCTCCTCGTTG CGTGGATCCCCGATGATTCCAAGGTGTGGGAAGCAATGGCAGCAAAGTAT CTATAGTCTATAGCAACGAAATATCTCAAAGGGGAACAAGTACCTGGGTG AGCAGCGCGACTTCGCAAACGTCTGATAGACCTACAAGTAGAGGACCAGT GCACCGCAACTGGGAACAGAGTCTCCTGGAAAAATAGGTTGGATATAAGA TGTAGGCTCAATTACGTTTGTCCAAAACAGGTCTTTTCCCTAAAATGGAA ATTTGATCTGTAGACCTCTCGCGACAAAGGAAAGCGCTTTCGGGACCCTC TTTGTATGGTCATCATATATAGCAGAGTATGAATCAACCGGGTAAGGTTG CCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATAATATTCCCCTGTCC CCGTGCGTGCCTGAAAATTTGGTTGGGGTTGGCCCAAAGCAACCTATTTC GTGCTTTCCCTCAATCCTTACGGAAAAAATATTACTAGTTACAATGTTAT CGACATGCGTTGGCAACACCGTTTGAAGATTCAAAGTAAAAAAAAAAATT AGGGCAAGCGCTATTTTGGAGTAGGGCCTGTTTTTGATATTCAACCTGTT TTTTCATTTGACTGGGAATAAGGAGACCTTTTTTCTGAGCTCTTGGTCAC AAATATTTTCAAGTTCTATGTATAGCTCTAGATTGGTTGGTCAATTGTTT GTATTTCACTTATAGCCGATGGGCCTCAACGTTGCCATCCTGCCTGTGGT CACTAAGGATCTTCCCATCTCTCCCCGGTTTTCGCCTTACGCTTTTTTAT CGCGATGCAAGTTCAGCGCTCTTAGAACTCTGGGCAAACGGTTACAGTGT ATACTGTGCATTCAAGTGTGTACAGGAGTATGAATAGGTTGTATCCTTGT TTTGTAAATATTTTGTACTTGGTATTGAAAAATACCTGGTACAAAGATAC AGCGGGAGCCGCAGTTTATGACACAGCTTCTGAAAATGCATTGCTCGTCT TCGACCTCTCGATGAAAGGAATTTCCAAACCATAAAAATATAAAGGGTCT TGTATCTTGCTGTACTCTTGGCGAATTCGACCTACTTGACAACTCTCTAT TGATGATGGGGCCAAGGGGGGAAGTGCAGATCTAACCTATTAATAGTTCC GAAACCCTAATCGCACTTGAACAATTGACGCCATCGCTCTGAGAAAAGGT GCGCGATAAGATGCTGTACTCCTCCTCAAAGCAAGACATTCGCCAAGGCC TCGGTCTTGGCTTCTTCGAGGGGGAGTACTACGCCAACGTTAAGAGCGAT CTAAACTTTGACAGCCTCGTCGCCAGCCGGCGCTCAGTGACCGGCGACCA ACTGCTCAGCGAGGCAGAGTGAGATGAACCGGGTTGCATTATCGGGTATT GTACGGGCGATATCACTCGAGAAAAAGAACCCACCCAACTCTACGAAGGA ATAGTGACTACATCAAAAGTTTGAGGACTTTTGCAAGCCCGTTGGTGCTT GATTGAGCCGATTGTCAGAGCACGCGGGCATTTCTGCTGTCCTAATGATA GGCATATGACCTCGAGCATCTGAACTAAATTTGGTGGAAGTATGTTCCAC TTGTACCCACGTTTGAACCTCAAGTGTCAAGAACCACCTACCAATTCAAT CTTCACAAGACTCGAAACGGTGTAACGAGGCGTCACGACGTCACAGTGAA AATAAAACGTTAGGAACATATGCCACCCGTGTGTTCAATTTCGCCCAAAA GGTTACTGAAGCGGGAACTGAACAAGCAAGAGCGCGCAAGCGACGCTGGC ATGAAGTCGGCCGCCATGGGCGTCATGCCCTTCACCATTCACGACGAAGT TCGAAACAAGCTCCGCGCTTTTGGCGAAGGCGTCGACGGCGTGAACTGGG TTGAGATGGTGAGCGGAGCCGCAGCGTAACGGTTTCACGGAGTCTCCACG CCCTCGGCGTACACGGCTCATTCTGTGACTTTATTTTGGCAACAGCTGAA GGCTCTTCACTCTATACTTTCCACGTTTGCTACCGTATTGTTTTGTGCCC TCGATGCGTGCGTAGCGGATGGATGGCGAGCAGGTCGCCATTGTGGAAGC CAAAAACGTGCCTGAGACAGCGAGCCTCGAAACCTTGGTGAACCAGGTTT GTCATGTTTACCGGACGGTGACGATCGAAATGATTGCCGTACTCAGTTAA ATGAGCACGAAGTTCATTCATAGCGGCGCATGCGCGCCCGATTGGGTTGG GTTTATTTTGCATCATGACTGTTCGTGTCATAGTCCTGGCTCGCTGGAAA ACCCTGTTCGCGAAAGATTTATGGCTGGCCGGGCACTTCGGGCACTAGCT TGAGCACCAACCATGGAGGACAGAAAAGGTGGCTATAATAAGTGGTTTAG AGCTATGACGGTAACAACAATAGAGCATGACGAGGAGAGTTGGAAAGCAA GAGATTGCTTCAACCGCCAACCGTCAGGGCCGTCTTCTCATTTATCGTTT AGTGCTGCTACTACTACATTGCACCCACTGTCGCGCCTCGCCCTGTCGCC CACGTCCGTCCTTTCCGTTCCGCAGGACGAGCCCCGCTTCGTCCTTTTGA GGAGGGAAGACATCAAGTGTAAGTTCGACGGGTGGAGCAAGGTTGAAGCT CCCTTGGCATTGGCTTACGGGCCCTCCTCTAATTTTGCGTTCTCTCTGTA GTATGTTCGATAATGTCATCAAATCTCATCGTTCTTTGGAAGGTCGAGGG ATGTGTGTCGCTGTTTTTGTTGATACTACGGCCGGAGCTTCGATCTTGAC AACGAGAGGTTGGCGGAAAATTTTGTCTAGGCTTTTCACGGACGACGAAG GCTGGTGCTCAAGTAACCCAGGGGACATGTTCATAGTTCTCAGACGTCTG GGCAACTGCTGTTTAGCGGGACCCTTCATGAAGGAAATCGAGCGGTTTTA TGTATACTACGTAACGATCACTAGTGCACTCCGAGTGTTCCACTCTCTAT CCGTCCCCGTCCTCCGCAGTTCTGGTCTACAGCTGTCCGGAGGCCTCGAC CTTGCGAGAAAGAATGATCTCCTCTTCCAGCAAAGCAAGCGTCGCGGCAG CTGCGTCAGAGGAGGGCACGACCGTCGATCACATGGTGAGACATCTAGCG AAACCATTCCGCGCGTGATTGGCGACTAGAACGAAAAAAAAAAAATCCCA GTCCGGAGGTATACATTGCCTTCGCCGACCGTTTAATGTTTCTGCAAAAG TCGTGCCGCCGCCCCTTCTCACGCATCCTGGCACCACCCTGTCCGATGAT GGAAACCCTCTGCGAACACACTTCTTCGAAGATCGAAATCAAGGCAGCCG ACGAGATCGACTCCGTCTTGGCGGACGCCATTCGAGCTCGTGCGGGTCTA GATGACAGTGGTGAAGCTCGCCCGGCGAACGGCGAGCGGGCGATGATGAC AAGTGGTGTCCCAGCTGTGGCGCGGCCGAACAGGCCCGGCCGTGGCCGGG CTAGGTTGACGAAGCGATCGTAAGCGAGACACCTTCCGTTGTAGTTAATT TTAGACTATAGTTTAGTGCTTGTGCTAGACACTGGTCATTCCCTTCATAA GTAGTGACTCGGCGTGAAACTACCGAGTCTCTTCAGGGACATGGCTGGGT TACTCTGCAAAAGCTGCTTGGTGCGAGGTTCCGAAGCTGCTGCTATGACC ATGAAGGCGAAGCTTCTGGCCAGCGCTTTAAATCATGGCCCACGCCCTCT GCTGCCGCTGTGAATGTCCTTTAGCTCTTCCCTCCCACGGCGCCGTATAG TCTTGATAACAGTATTTTTCACTCGGCGACTGGGCACGGATCAACACCGC TTGTGGGAGGTGAAATCCTTCGCCGTCAGCGTTCGGATGCGCAACCTGTA GTGGTGACCTAGCTCATCAAAGGGCACCAGTAATAAACACAAATATTGTT GACGATTAGGCTCTACTGTAGCTTTTCTCAATACCAGGTAGTTTTCTTTG AAGGGCTTTTGTGCTGATATTTTCCCCGGCGAATACCGCAAAAGATGCGT AACTGCACGTTACTCAATACAAAAAACGCAGTTAACGGGGATACAGTCGA AATGAGAGGCCGCAACTACAGCGCATTGCAATAGCAGTATATCCAACACG ATGTACCGGCAGTTTCGTTTAATGGGCCACGACGCAGGTAATCCTTTGTA G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1070:168291..173691+

>mRNA_A-nodosum_M_contig1070.20.1 ID=mRNA_A-nodosum_M_contig1070.20.1|Name=mRNA_A-nodosum_M_contig1070.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at A-nodosum_M_contig1070:168291..173691+ (Ascophyllum nodosum dioecious)
ATGGCAGCTCGAGCATTCCTCCGTTTATCTGAGGATCTCCGCGAGGGATT
TGCCAAAGCCCAAGATGATGAGACACTGCGTTTCCTGCGCGTTGAAATTG
TCGATGAGGATACATTGACTATAGTCGGGTCGCGGCAACGCGGAGACCTG
CAGACGGACTTCGACTCACTAGCTGAGGAAGCGGTCGAGGCAACCCCGTC
TATCTTCCTGGTGTCGCTGGACCCCGAGGAACTCAAGATGGTAACGGGAA
AGGCGGCAGGCGCGGCGCGTCAGTGGCTCCTCGTTGCGTGGATCCCCGAT
GATTCCAAGGTGCGCGATAAGATGCTGTACTCCTCCTCAAAGCAAGACAT
TCGCCAAGGCCTCGGTCTTGGCTTCTTCGAGGGGGAGTACTACGCCAACG
TTAAGAGCGATCTAAACTTTGACAGCCTCGTCGCCAGCCGGCGCTCAGTG
ACCGGCGACCAACTGCTCAGCGAGGCAGAGTTACTGAAGCGGGAACTGAA
CAAGCAAGAGCGCGCAAGCGACGCTGGCATGAAGTCGGCCGCCATGGGCG
TCATGCCCTTCACCATTCACGACGAAGTTCGAAACAAGCTCCGCGCTTTT
GGCGAAGGCGTCGACGGCGTGAACTGGGTTGAGATGCGGATGGATGGCGA
GCAGGTCGCCATTGTGGAAGCCAAAAACGTGCCTGAGACAGCGAGCCTCG
AAACCTTGGTGAACCAGGACGAGCCCCGCTTCGTCCTTTTGAGGAGGGAA
GACATCAAGTTTCTGGTCTACAGCTGTCCGGAGGCCTCGACCTTGCGAGA
AAGAATGATCTCCTCTTCCAGCAAAGCAAGCGTCGCGGCAGCTGCGTCAG
AGGAGGGCACGACCGTCGATCACATGATCGAAATCAAGGCAGCCGACGAG
ATCGACTCCGTCTTGGCGGACGCCATTCGAGCTCGTGCGGGTCTAGATGA
CAGTGGTGAAGCTCGCCCGGCGAACGGCGAGCGGGCGATGATGACAAGTG
GTGTCCCAGCTGTGGCGCGGCCGAACAGGCCCGGCCGTGGCCGGGCTAGG
TTGACGAAGCGATCGTAA
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