mRNA_A-nodosum_M_contig107.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig107.11.1
Unique NamemRNA_A-nodosum_M_contig107.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig107.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig107contigA-nodosum_M_contig107:425777..427168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size456
Hectar predicted targeting categoryother localisation
Exons3
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866454.9254441-CDS-A-nodosum_M_contig107:425776..4258991680866454.9254441-CDS-A-nodosum_M_contig107:425776..425899Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 425777..425899 -
1680866454.9342818-CDS-A-nodosum_M_contig107:426228..4264671680866454.9342818-CDS-A-nodosum_M_contig107:426228..426467Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 426229..426467 -
1680866454.9512548-CDS-A-nodosum_M_contig107:427074..4271681680866454.9512548-CDS-A-nodosum_M_contig107:427074..427168Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 427075..427168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig107.11.1prot_A-nodosum_M_contig107.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig107 425777..427168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig107.11.1

>prot_A-nodosum_M_contig107.11.1 ID=prot_A-nodosum_M_contig107.11.1|Name=mRNA_A-nodosum_M_contig107.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=152bp
MPELDCQVLKRDINLGQNSSNADNHASGIAYDIMYIGLLVGLAGGVAGLL
AGSGRSTMAAKLFFWSMLAGLWLSVASLVVSFAKGHLNTYGTPVTLVCNA
VYYFFFIYFTKVAWSYYTVLKARDINTSSGFDDGVELGDVLDVDVRSYET
A*
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mRNA from alignment at A-nodosum_M_contig107:425777..427168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig107.11.1 ID=mRNA_A-nodosum_M_contig107.11.1|Name=mRNA_A-nodosum_M_contig107.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1392bp|location=Sequence derived from alignment at A-nodosum_M_contig107:425777..427168- (Ascophyllum nodosum dioecious)
ATGCCCGAACTTGACTGCCAGGTACTGAAGCGAGATATTAATCTTGGACA
GAACTCCTCGAACGCGGATAATCATGCATCAGGGATTGCCTACGGTACGT
GAAATGGAGATAGAGATATTTGCAGGTCGTTCTTCGACCCAAGCGCCGAA
ACTGGAAGAAGAATGGATACAGAATACCAGAGCCGAATTGTTTTCACCAC
GTGTGGTAGAATACTAGACGAGTGCGAGTTTCGCGGCACAACGGGTGTTC
TTCTTGTGGATCAAATCTCGACTCAAGACATTTGTGTAGTTTTGTGTATA
GCACGAATGCACGCAACAGTCGAAATCCGCATCGCTCGTTAAAACTCATA
CCCGTACTCCCCATTACCTGATGTTAGCTCGTATGCTGTTTAGGACGAAC
CTGGTTTCACCTTTTTATACACGTGGCTTCGTAAATCAAAGCAAATGATG
AGCTGCGCTTCTTCCAATAGCAGCGTGATGGTATAGTAATAGATAGAAGT
TAGTTACACGGTCTCATATAAGCACAGCAGGTGTTCTTAACGATAGCCAG
TCTAATCTCCCGATATACAGTCTAATCTCCCCGCCGAGCTATTAGTAAGT
TAATGGCCACCGCAATCTTGTTACACCACCCCAACCCAATAGATAAATGT
TTCACGTCTCACATTACTTTGCTGCTGCCGACCACTACTCTTCCGCATAA
GATATCATGTATATTGGCTTGTTGGTGGGCCTAGCTGGTGGCGTAGCCGG
TCTGTTGGCCGGTAGCGGCCGCAGCACGATGGCGGCAAAACTCTTCTTCT
GGTCGATGCTGGCGGGCCTCTGGCTCAGCGTGGCGTCATTGGTCGTGTCG
TTTGCGAAGGGGCATCTCAACACCTATGGCACACCGGTCACATTGGTGTG
CAATGCGGTATATTATTTCTTCTTCATCTACTTCACTAAGGTATCATATT
TAATAATATATTGTAATATAGTATAATATATTCAAGTGGTACGAGTATTA
TTATTATGGCGGTAGACATCAGGCGTCGATGATTCAGAAACAAATATAAA
AAAGCGCAATACGCAGCGAACGTAACATATTTCAGGTGGTTGGCGTTTTA
GTTGATTGGCTTATAGTACCAGTTTCGGGACGGTCAAGTGTGCCGTATCT
ACCGTGTAAAGGAAAAGACGTGATAGCATCGTTCGCCAATCCGGTCAGAT
GTCGACTTAAGGTTTCCCAACGATGATGTATCTCGAAACCTCGGCTGTCG
TGTCCCCATCTGTTGTCAGGTGGCTTGGTCTTACTACACGGTGCTAAAAG
CACGCGACATCAACACATCGTCCGGCTTCGATGACGGTGTCGAGCTTGGT
GATGTATTGGACGTAGATGTGAGGAGTTATGAGACTGCTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig107:425777..427168-

>mRNA_A-nodosum_M_contig107.11.1 ID=mRNA_A-nodosum_M_contig107.11.1|Name=mRNA_A-nodosum_M_contig107.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at A-nodosum_M_contig107:425777..427168- (Ascophyllum nodosum dioecious)
ATGCCCGAACTTGACTGCCAGGTACTGAAGCGAGATATTAATCTTGGACA
GAACTCCTCGAACGCGGATAATCATGCATCAGGGATTGCCTACGATATCA
TGTATATTGGCTTGTTGGTGGGCCTAGCTGGTGGCGTAGCCGGTCTGTTG
GCCGGTAGCGGCCGCAGCACGATGGCGGCAAAACTCTTCTTCTGGTCGAT
GCTGGCGGGCCTCTGGCTCAGCGTGGCGTCATTGGTCGTGTCGTTTGCGA
AGGGGCATCTCAACACCTATGGCACACCGGTCACATTGGTGTGCAATGCG
GTATATTATTTCTTCTTCATCTACTTCACTAAGGTGGCTTGGTCTTACTA
CACGGTGCTAAAAGCACGCGACATCAACACATCGTCCGGCTTCGATGACG
GTGTCGAGCTTGGTGATGTATTGGACGTAGATGTGAGGAGTTATGAGACT
GCTTGA
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