mRNA_A-nodosum_M_contig1066.1.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: D8LBH8_ECTSI (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH8_ECTSI) HSP 1 Score: 466 bits (1198), Expect = 8.850e-160 Identity = 233/269 (86.62%), Postives = 248/269 (92.19%), Query Frame = 1
Query: 1 VALGCVNVNQAFLVPTTTVAGTAAVRRGPSLTMAAADNSYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELSSATI 807
VA CV +QAF+VPT TV+G + SLTMAA +N+YHKKDFWIAPSILSADMAKLG+EVDNAM+AGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVT PIDVHLMVSPVDRIVGDFA AGASFITFHPEASPHVDRTL LIKS+GCKAGLVFNPATPLDHAKYVLDK+DIILLMSVNPGFGGQSFIPSTL KLREARKMIDESG+DIRLEVDGGCGV NIKEIAEAGADMFVAGSAIFN PRT++NY+ETI KMRSEL+ ATI
Sbjct: 8 VAFACVGASQAFVVPTATVSGASTRHTSSSLTMAA-ENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 275
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: A0A835YRZ4_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ4_9STRA) HSP 1 Score: 398 bits (1022), Expect = 3.660e-133 Identity = 196/241 (81.33%), Postives = 218/241 (90.46%), Query Frame = 1
Query: 85 PSLTMAAADNSYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELSSATI 807
P+ ++ A+N++H+KDF IAPSILSADMAKLGEEVDNAMAAGAD+VHFDVMDNHYVPNLTIGPLVCK LR+HGV IDVHLMVSPVDRIVGDFA AGAS+ITFHPEASPHVDRTLQLIKS GCK+GLVFNPATPLD AKYVLDK+DIILLMSVNPGFGGQ+FIP+TL KLREAR MIDESGFDIRLE+DGG NNIKEIAEAGADMFVAGSA+F PRT + Y +TI K+R+EL++A I
Sbjct: 28 PTSSLRMANNAWHRKDFQIAPSILSADMAKLGEEVDNAMAAGADVVHFDVMDNHYVPNLTIGPLVCKALRNHGVKNDIDVHLMVSPVDRIVGDFAEAGASYITFHPEASPHVDRTLQLIKSTGCKSGLVFNPATPLDFAKYVLDKVDIILLMSVNPGFGGQAFIPATLDKLREARAMIDESGFDIRLEIDGGVTQNNIKEIAEAGADMFVAGSAVFKNPRTVEAYTDTITKLRAELAAAQI 268
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: W7TD18_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD18_9STRA) HSP 1 Score: 380 bits (975), Expect = 3.330e-126 Identity = 186/224 (83.04%), Postives = 203/224 (90.62%), Query Frame = 1
Query: 124 KKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELS 795
KKDFWIAPSILSAD AKLG+EVDN +AAGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFA+AGASFITFHPEA+ H+DRTLQLIKS GCK+GLVFNPATPL A++VLDK+DIILLMSVNPGFGGQSFIP TL KL+EARKMIDESG+DIRLEVDGG GV NIK+IAEAGAD FVAGSAI PRTQD Y+ TI MR+EL+
Sbjct: 40 KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELA 263
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: A0A6S8QFJ5_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8QFJ5_9STRA) HSP 1 Score: 367 bits (943), Expect = 3.070e-121 Identity = 179/228 (78.51%), Postives = 202/228 (88.60%), Query Frame = 1
Query: 124 KKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELSSATI 807
+KDF IAPSILSAD AKLG EVD ++AAGAD+VHFDVMDNHYVPNLTIGP+VC LR HGVT PIDVHLMVSPVDRIV DFA+AGAS+ITFHPEASPHVDRTLQLI+S GCK+GLVFNPATPLD KYV+DK+DIILLMSVNPGFGGQ+FIP+TL K REARKMIDESG+DIRLE+DGG NIKE+AEAG DMFVAGSAIF PRT++ Y++TI MR EL++A +
Sbjct: 41 EKDFLIAPSILSADFAKLGAEVDASLAAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVQDFADAGASYITFHPEASPHVDRTLQLIRSTGCKSGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQAFIPATLDKAREARKMIDESGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEAYKKTIDAMRDELAAAKV 268
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: F0YLQ5_AURAN (Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ5_AURAN) HSP 1 Score: 367 bits (942), Expect = 4.500e-121 Identity = 178/227 (78.41%), Postives = 201/227 (88.55%), Query Frame = 1
Query: 127 KDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELSSATI 807
KDF IAPSILSAD A+LGEEV N+++AGAD+VHFDVMDNHYVPNLTIGP+VC LR HGVT PIDVHLMVSPVDRIVGDFA+AGAS+ITFHPEASPHVDRTLQLI+ GCKAGLVFNPATPLD KYV+DK+DIILLMSVNPGFGGQSFIP+TL K REARK+ID SG+DIRLE+DGG NIKE+AEAG DMFVAGSAIF PRT+++Y+ TI MR EL++A +
Sbjct: 43 KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAKV 269
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: A0A7S0M6B2_9CRYP (Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6B2_9CRYP) HSP 1 Score: 360 bits (925), Expect = 8.470e-119 Identity = 173/225 (76.89%), Postives = 199/225 (88.44%), Query Frame = 1
Query: 127 KDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELSSA 801
KDF IAPSILSA+ AKLGEEVDN +AAGAD+VHFDVMDNHYVPNLTIGP VCK LRDHGVT PIDVHLMVSPVDRI+GDF +AGAS+ITFHPEA+ HVDR+L L+++ GCK+GLVFNP+T LD+ KYV+DK+DIILLMSVNPGFGGQ FIP+ L K REARKMIDESGFDIRLE+DGG V+NIK++AEAG D FVAGSAI APRT+D YR TI +MR+ L++A
Sbjct: 25 KDFLIAPSILSANFAKLGEEVDNMLAAGADVVHFDVMDNHYVPNLTIGPGVCKALRDHGVTAPIDVHLMVSPVDRIIGDFVDAGASYITFHPEATNHVDRSLSLVRAAGCKSGLVFNPSTSLDYLKYVMDKVDIILLMSVNPGFGGQKFIPNVLDKAREARKMIDESGFDIRLEIDGGVTVDNIKDVAEAGVDFFVAGSAILKAPRTKDAYRSTINQMRTNLAAA 249
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: A0A7S2UWQ6_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ6_9STRA) HSP 1 Score: 360 bits (923), Expect = 3.530e-118 Identity = 185/261 (70.88%), Postives = 213/261 (81.61%), Query Frame = 1
Query: 16 VNVNQAFLVPTTTVAGTAAVRRGPSLTMAAADNSYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELSS 798
V V+ FL P T GT + SL M A + KD+ IAPSILSA+ AKLGEEVDN +AAGAD+VHFDVMDNHYVPNLTIGP+VCK L+DHGVT PIDVHLMV PVDRI+GDFA+AGA +ITFHPEAS H+DR+L LIKS GCK+GLVFNPAT LD+AKYVLDK+DIILLMSVNPGFGGQSFIP K+++ARKMIDESG+DI+LE+DGG VNNIK+IAEAG DMFVAGSAI PR +D Y ETIK MR +L++
Sbjct: 15 VAVSCGFLTPQTLGLGTRVSKS--SLKMGA---DFPDKDYLIAPSILSANFAKLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALKDHGVTAPIDVHLMVDPVDRIIGDFADAGADYITFHPEASGHIDRSLGLIKSLGCKSGLVFNPATSLDYAKYVLDKVDIILLMSVNPGFGGQSFIP-IYDKIKQARKMIDESGYDIKLEIDGGVNVNNIKDIAEAGVDMFVAGSAILKEPRNKDAYAETIKTMREQLAT 269
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: A0A7S0YLA0_9CRYP (Ribulose-phosphate 3-epimerase n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0YLA0_9CRYP) HSP 1 Score: 360 bits (923), Expect = 7.060e-118 Identity = 175/225 (77.78%), Postives = 195/225 (86.67%), Query Frame = 1
Query: 133 FWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELSSATI 807
+ IAPSILSAD AKLGEEVDN +AAGAD+VHFDVMDNHYVPNLTIGP VCK LRDHGVT PIDVHLMV PVDRI+GDF +AGAS+ITFHPEAS H+DR+LQLI+ GCK+GLVF PAT LD+AKYVLDK+DIILLMSVNPGFGGQ FI TL K REARKMIDESG+DIRLE+DGG G NIK++AEAG DMFVAGSAI APRTQD Y +TIK +R EL+ A +
Sbjct: 72 YLIAPSILSADFAKLGEEVDNMLAAGADVVHFDVMDNHYVPNLTIGPGVCKALRDHGVTAPIDVHLMVDPVDRIIGDFIDAGASYITFHPEASNHIDRSLQLIRDGGCKSGLVFTPATSLDYAKYVLDKVDIILLMSVNPGFGGQKFIEGTLDKAREARKMIDESGYDIRLEIDGGVGEANIKKVAEAGVDMFVAGSAILKAPRTQDAYAKTIKTLRGELAKAEV 296
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: L1JR28_GUITC (Ribulose-phosphate 3-epimerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JR28_GUITC) HSP 1 Score: 358 bits (920), Expect = 9.650e-118 Identity = 171/227 (75.33%), Postives = 196/227 (86.34%), Query Frame = 1
Query: 127 KDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELSSATI 807
KD+ IAPSILSAD AKLG+EVDN +AAGAD+VHFDVMDNHYVPNLTIGP+VCK LR+HGVT PIDVHLMV PVDRI+GDF +AGAS+ITFHPEAS H+DRTL +I+ GCKAGLV NPAT LD+ KYV+DKIDIILLMSVNPGFGGQ FIPS L K +EARK+ID SG+DIRLE+DGG V+NIK++AE G DMFVAGSAI PRTQD Y+ TI KMR +L+SA +
Sbjct: 49 KDYLIAPSILSADFAKLGQEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVQPVDRIIGDFIDAGASYITFHPEASNHIDRTLAMIRDGGCKAGLVLNPATSLDYCKYVMDKIDIILLMSVNPGFGGQKFIPSVLEKAKEARKLIDASGYDIRLEIDGGVTVDNIKQVAECGVDMFVAGSAILKEPRTQDAYKTTIDKMRQQLASAKV 275
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Match: A0A7S0LBR0_9EUKA (Ribulose-phosphate 3-epimerase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LBR0_9EUKA) HSP 1 Score: 357 bits (915), Expect = 3.130e-117 Identity = 178/247 (72.06%), Postives = 208/247 (84.21%), Query Frame = 1
Query: 67 AAVRRGPSLTMAAADNSYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLTKLREARKMIDESGFDIRLEVDGGCGVNNIKEIAEAGADMFVAGSAIFNAPRTQDNYRETIKKMRSELSSATI 807
AAV RG ++ MA+ ++ IAPSILSAD AKLGEEVD +AAGAD VHFDVMDNHYVPNLTIGPLVCK LR+HG+T PIDVHLMVSPVDRI+GDFA+AGAS+ITFHPEA+ H+DR+LQL+++ GCK+GLVFNPAT LD KYV+DK+DI+LLMSVNPGFGGQSFIP+TL KLREAR MIDESGFDI LE+DGG G NI E+A AGADMFVAGSAIFN P +Y+ETI KMR+EL++ +
Sbjct: 19 AAVSRGSTVRMAS--------EYLIAPSILSADFAKLGEEVDTVLAAGADTVHFDVMDNHYVPNLTIGPLVCKALRNHGITAPIDVHLMVSPVDRIIGDFADAGASYITFHPEATTHIDRSLQLVRAAGCKSGLVFNPATSLDCLKYVMDKVDIVLLMSVNPGFGGQSFIPATLDKLREARAMIDESGFDISLEIDGGVGPANIAEVAAAGADMFVAGSAIFNTP----DYKETIDKMRAELATVPV 253 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1066.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1066.1.2 >prot_A-nodosum_M_contig1066.1.2 ID=prot_A-nodosum_M_contig1066.1.2|Name=mRNA_A-nodosum_M_contig1066.1.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=239bp MAAADNSYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHback to top mRNA from alignment at A-nodosum_M_contig1066:26216..39108- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1066.1.2 ID=mRNA_A-nodosum_M_contig1066.1.2|Name=mRNA_A-nodosum_M_contig1066.1.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=12893bp|location=Sequence derived from alignment at A-nodosum_M_contig1066:26216..39108- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1066:26216..39108- >mRNA_A-nodosum_M_contig1066.1.2 ID=mRNA_A-nodosum_M_contig1066.1.2|Name=mRNA_A-nodosum_M_contig1066.1.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=717bp|location=Sequence derived from alignment at A-nodosum_M_contig1066:26216..39108- (Ascophyllum nodosum dioecious)back to top |